Experiment: NoPhageControl|T7phage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glgP and glgA are separated by 18 nucleotides glgA and glgC overlap by 1 nucleotides
b3428: glgP - glycogen phosphorylase (NCBI), at 3,562,157 to 3,564,604
glgP
b3429: glgA - glycogen synthase (NCBI), at 3,564,623 to 3,566,056
glgA
b3430: glgC - glucose-1-phosphate adenylyltransferase (NCBI), at 3,566,056 to 3,567,351
glgC
Position (kb)
3564
3565
3566
3567 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3563.629 kb on + strand, within glgP at 3563.629 kb on + strand, within glgP at 3563.640 kb on + strand, within glgP at 3563.648 kb on - strand, within glgP at 3563.648 kb on - strand, within glgP at 3563.663 kb on - strand, within glgP at 3563.695 kb on + strand, within glgP at 3563.695 kb on + strand, within glgP at 3563.695 kb on + strand, within glgP at 3563.703 kb on - strand, within glgP at 3563.703 kb on - strand, within glgP at 3563.764 kb on + strand, within glgP at 3563.775 kb on + strand, within glgP at 3563.783 kb on - strand, within glgP at 3563.786 kb on - strand, within glgP at 3563.786 kb on - strand, within glgP at 3563.790 kb on + strand, within glgP at 3563.832 kb on - strand, within glgP at 3563.886 kb on + strand, within glgP at 3563.895 kb on + strand, within glgP at 3563.963 kb on - strand, within glgP at 3563.983 kb on + strand, within glgP at 3564.124 kb on - strand, within glgP at 3564.210 kb on + strand, within glgP at 3564.224 kb on + strand, within glgP at 3564.234 kb on + strand, within glgP at 3564.234 kb on + strand, within glgP at 3564.234 kb on + strand, within glgP at 3564.234 kb on + strand, within glgP at 3564.244 kb on + strand, within glgP at 3564.244 kb on + strand, within glgP at 3564.246 kb on - strand, within glgP at 3564.350 kb on - strand, within glgP at 3564.360 kb on - strand at 3564.371 kb on - strand at 3564.371 kb on - strand at 3564.450 kb on - strand at 3564.450 kb on - strand at 3564.470 kb on - strand at 3564.548 kb on + strand at 3564.548 kb on - strand at 3564.548 kb on - strand at 3564.551 kb on + strand at 3564.588 kb on - strand at 3564.603 kb on + strand at 3564.633 kb on + strand at 3564.633 kb on + strand at 3564.668 kb on + strand at 3564.710 kb on + strand at 3564.710 kb on + strand at 3564.713 kb on + strand at 3564.726 kb on - strand at 3564.726 kb on - strand at 3564.734 kb on + strand at 3564.734 kb on + strand at 3564.744 kb on - strand at 3564.744 kb on - strand at 3564.783 kb on - strand, within glgA at 3564.844 kb on - strand, within glgA at 3564.869 kb on - strand, within glgA at 3564.883 kb on + strand, within glgA at 3564.910 kb on + strand, within glgA at 3564.923 kb on - strand, within glgA at 3564.923 kb on - strand, within glgA at 3564.952 kb on + strand, within glgA at 3565.009 kb on - strand, within glgA at 3565.065 kb on - strand, within glgA at 3565.065 kb on - strand, within glgA at 3565.076 kb on + strand, within glgA at 3565.076 kb on + strand, within glgA at 3565.084 kb on - strand, within glgA at 3565.107 kb on - strand, within glgA at 3565.107 kb on - strand, within glgA at 3565.122 kb on + strand, within glgA at 3565.122 kb on + strand, within glgA at 3565.160 kb on + strand, within glgA at 3565.197 kb on - strand, within glgA at 3565.325 kb on - strand, within glgA at 3565.325 kb on - strand, within glgA at 3565.371 kb on + strand, within glgA at 3565.371 kb on + strand, within glgA at 3565.371 kb on + strand, within glgA at 3565.379 kb on - strand, within glgA at 3565.419 kb on + strand, within glgA at 3565.419 kb on + strand, within glgA at 3565.428 kb on + strand, within glgA at 3565.428 kb on + strand, within glgA at 3565.443 kb on + strand, within glgA at 3565.448 kb on + strand, within glgA at 3565.448 kb on + strand, within glgA at 3565.451 kb on - strand, within glgA at 3565.451 kb on - strand, within glgA at 3565.456 kb on - strand, within glgA at 3565.456 kb on - strand, within glgA at 3565.456 kb on - strand, within glgA at 3565.458 kb on + strand, within glgA at 3565.582 kb on - strand, within glgA at 3565.589 kb on - strand, within glgA at 3565.604 kb on + strand at 3565.658 kb on + strand, within glgA at 3565.671 kb on - strand, within glgA at 3565.671 kb on - strand, within glgA at 3565.689 kb on - strand, within glgA at 3565.689 kb on - strand, within glgA at 3565.723 kb on - strand, within glgA at 3565.751 kb on + strand, within glgA at 3565.767 kb on + strand, within glgA at 3565.785 kb on - strand, within glgA at 3565.888 kb on + strand, within glgA at 3566.108 kb on - strand at 3566.181 kb on - strand at 3566.186 kb on + strand, within glgC at 3566.205 kb on - strand, within glgC at 3566.239 kb on - strand, within glgC at 3566.275 kb on - strand, within glgC at 3566.275 kb on - strand, within glgC at 3566.377 kb on - strand, within glgC at 3566.397 kb on - strand, within glgC at 3566.399 kb on + strand, within glgC at 3566.452 kb on + strand, within glgC at 3566.477 kb on - strand, within glgC at 3566.515 kb on - strand, within glgC at 3566.536 kb on - strand, within glgC at 3566.541 kb on - strand, within glgC at 3566.593 kb on - strand, within glgC at 3566.598 kb on - strand, within glgC at 3566.660 kb on - strand, within glgC at 3566.660 kb on - strand, within glgC at 3566.676 kb on + strand, within glgC at 3566.676 kb on + strand, within glgC at 3566.689 kb on + strand, within glgC at 3566.689 kb on + strand, within glgC at 3566.711 kb on - strand, within glgC at 3566.711 kb on - strand, within glgC at 3566.718 kb on - strand, within glgC at 3566.719 kb on - strand, within glgC at 3566.750 kb on + strand, within glgC at 3566.841 kb on + strand, within glgC at 3566.841 kb on + strand, within glgC at 3566.849 kb on - strand, within glgC at 3566.849 kb on - strand, within glgC at 3566.902 kb on - strand, within glgC at 3566.902 kb on - strand, within glgC at 3566.923 kb on + strand, within glgC at 3567.039 kb on + strand, within glgC
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl|T7phage remove 3,563,629 + glgP b3428 0.60 +0.6 3,563,629 + glgP b3428 0.60 +0.9 3,563,640 + glgP b3428 0.61 -0.3 3,563,648 - glgP b3428 0.61 -0.2 3,563,648 - glgP b3428 0.61 -0.6 3,563,663 - glgP b3428 0.62 +0.7 3,563,695 + glgP b3428 0.63 +0.3 3,563,695 + glgP b3428 0.63 -1.0 3,563,695 + glgP b3428 0.63 -0.3 3,563,703 - glgP b3428 0.63 +0.2 3,563,703 - glgP b3428 0.63 -0.7 3,563,764 + glgP b3428 0.66 -0.4 3,563,775 + glgP b3428 0.66 -0.5 3,563,783 - glgP b3428 0.66 +1.0 3,563,786 - glgP b3428 0.67 +0.2 3,563,786 - glgP b3428 0.67 -0.9 3,563,790 + glgP b3428 0.67 -0.2 3,563,832 - glgP b3428 0.68 +0.6 3,563,886 + glgP b3428 0.71 -0.8 3,563,895 + glgP b3428 0.71 -0.9 3,563,963 - glgP b3428 0.74 -0.1 3,563,983 + glgP b3428 0.75 +0.1 3,564,124 - glgP b3428 0.80 -0.7 3,564,210 + glgP b3428 0.84 +0.1 3,564,224 + glgP b3428 0.84 -0.1 3,564,234 + glgP b3428 0.85 +1.6 3,564,234 + glgP b3428 0.85 -0.3 3,564,234 + glgP b3428 0.85 +0.8 3,564,234 + glgP b3428 0.85 +1.0 3,564,244 + glgP b3428 0.85 -1.5 3,564,244 + glgP b3428 0.85 +0.0 3,564,246 - glgP b3428 0.85 -0.3 3,564,350 - glgP b3428 0.90 -1.2 3,564,360 - +0.3 3,564,371 - +0.2 3,564,371 - +0.9 3,564,450 - -0.3 3,564,450 - -0.1 3,564,470 - -0.6 3,564,548 + +0.0 3,564,548 - +1.3 3,564,548 - -0.8 3,564,551 + +0.3 3,564,588 - +0.2 3,564,603 + +0.6 3,564,633 + +1.3 3,564,633 + +1.2 3,564,668 + -0.6 3,564,710 + +0.3 3,564,710 + +0.5 3,564,713 + +1.4 3,564,726 - +0.9 3,564,726 - +0.5 3,564,734 + +0.6 3,564,734 + +0.4 3,564,744 - +1.7 3,564,744 - -0.0 3,564,783 - glgA b3429 0.11 +0.2 3,564,844 - glgA b3429 0.15 +0.7 3,564,869 - glgA b3429 0.17 -0.8 3,564,883 + glgA b3429 0.18 +1.3 3,564,910 + glgA b3429 0.20 +0.9 3,564,923 - glgA b3429 0.21 +1.7 3,564,923 - glgA b3429 0.21 +0.1 3,564,952 + glgA b3429 0.23 -0.4 3,565,009 - glgA b3429 0.27 +0.6 3,565,065 - glgA b3429 0.31 +1.2 3,565,065 - glgA b3429 0.31 +0.1 3,565,076 + glgA b3429 0.32 +0.5 3,565,076 + glgA b3429 0.32 +1.0 3,565,084 - glgA b3429 0.32 +0.1 3,565,107 - glgA b3429 0.34 +0.4 3,565,107 - glgA b3429 0.34 +1.8 3,565,122 + glgA b3429 0.35 +1.0 3,565,122 + glgA b3429 0.35 +2.0 3,565,160 + glgA b3429 0.37 +0.1 3,565,197 - glgA b3429 0.40 +1.0 3,565,325 - glgA b3429 0.49 +1.0 3,565,325 - glgA b3429 0.49 +0.6 3,565,371 + glgA b3429 0.52 +0.6 3,565,371 + glgA b3429 0.52 +0.7 3,565,371 + glgA b3429 0.52 +1.0 3,565,379 - glgA b3429 0.53 +0.2 3,565,419 + glgA b3429 0.56 -0.5 3,565,419 + glgA b3429 0.56 +0.5 3,565,428 + glgA b3429 0.56 +0.2 3,565,428 + glgA b3429 0.56 +0.2 3,565,443 + glgA b3429 0.57 +0.9 3,565,448 + glgA b3429 0.58 +0.2 3,565,448 + glgA b3429 0.58 +0.5 3,565,451 - glgA b3429 0.58 +0.5 3,565,451 - glgA b3429 0.58 +0.2 3,565,456 - glgA b3429 0.58 +1.1 3,565,456 - glgA b3429 0.58 +0.4 3,565,456 - glgA b3429 0.58 +0.4 3,565,458 + glgA b3429 0.58 +0.7 3,565,582 - glgA b3429 0.67 +1.3 3,565,589 - glgA b3429 0.67 +0.4 3,565,604 + +0.0 3,565,658 + glgA b3429 0.72 +0.8 3,565,671 - glgA b3429 0.73 -0.2 3,565,671 - glgA b3429 0.73 +0.8 3,565,689 - glgA b3429 0.74 -0.6 3,565,689 - glgA b3429 0.74 +0.7 3,565,723 - glgA b3429 0.77 +1.5 3,565,751 + glgA b3429 0.79 +0.4 3,565,767 + glgA b3429 0.80 -0.4 3,565,785 - glgA b3429 0.81 +0.5 3,565,888 + glgA b3429 0.88 +0.1 3,566,108 - +1.6 3,566,181 - -2.3 3,566,186 + glgC b3430 0.10 +0.1 3,566,205 - glgC b3430 0.11 +0.3 3,566,239 - glgC b3430 0.14 -0.9 3,566,275 - glgC b3430 0.17 -1.0 3,566,275 - glgC b3430 0.17 +0.5 3,566,377 - glgC b3430 0.25 -0.2 3,566,397 - glgC b3430 0.26 +1.3 3,566,399 + glgC b3430 0.26 -0.2 3,566,452 + glgC b3430 0.31 +0.1 3,566,477 - glgC b3430 0.32 -0.1 3,566,515 - glgC b3430 0.35 -0.4 3,566,536 - glgC b3430 0.37 -1.9 3,566,541 - glgC b3430 0.37 +0.7 3,566,593 - glgC b3430 0.41 -0.0 3,566,598 - glgC b3430 0.42 -0.1 3,566,660 - glgC b3430 0.47 +0.3 3,566,660 - glgC b3430 0.47 -0.7 3,566,676 + glgC b3430 0.48 +1.9 3,566,676 + glgC b3430 0.48 +0.2 3,566,689 + glgC b3430 0.49 -0.2 3,566,689 + glgC b3430 0.49 +0.9 3,566,711 - glgC b3430 0.51 -0.5 3,566,711 - glgC b3430 0.51 -0.9 3,566,718 - glgC b3430 0.51 +0.2 3,566,719 - glgC b3430 0.51 -0.1 3,566,750 + glgC b3430 0.54 +0.4 3,566,841 + glgC b3430 0.61 +0.5 3,566,841 + glgC b3430 0.61 -0.1 3,566,849 - glgC b3430 0.61 +0.4 3,566,849 - glgC b3430 0.61 +2.0 3,566,902 - glgC b3430 0.65 +0.3 3,566,902 - glgC b3430 0.65 +0.6 3,566,923 + glgC b3430 0.67 -0.3 3,567,039 + glgC b3430 0.76 +0.6
Or see this region's nucleotide sequence