Experiment: NoPhageControl|T7phage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygfI and yggE are separated by 166 nucleotides yggE and argO are separated by 92 nucleotides argO and mscS are separated by 138 nucleotides
b2921: ygfI - putative transcriptional regulator LYSR-type (VIMSS), at 3,064,299 to 3,065,195
ygfI
b2922: yggE - hypothetical protein (NCBI), at 3,065,362 to 3,066,102
yggE
b2923: argO - arginine exporter protein (NCBI), at 3,066,195 to 3,066,830
argO
b2924: mscS - mechanosensitive channel (NCBI), at 3,066,969 to 3,067,829
mscS
Position (kb)
3066
3067 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3065.226 kb on - strand at 3065.244 kb on + strand at 3065.245 kb on - strand at 3065.259 kb on + strand at 3065.270 kb on - strand at 3065.284 kb on + strand at 3065.315 kb on + strand at 3065.327 kb on + strand at 3065.327 kb on + strand at 3065.327 kb on + strand at 3065.335 kb on - strand at 3065.381 kb on + strand at 3065.410 kb on + strand at 3065.411 kb on - strand at 3065.418 kb on - strand at 3065.430 kb on + strand at 3065.466 kb on + strand, within yggE at 3065.503 kb on - strand, within yggE at 3065.508 kb on + strand, within yggE at 3065.508 kb on + strand, within yggE at 3065.516 kb on - strand, within yggE at 3065.521 kb on - strand, within yggE at 3065.521 kb on - strand, within yggE at 3065.521 kb on - strand, within yggE at 3065.549 kb on + strand, within yggE at 3065.557 kb on - strand, within yggE at 3065.557 kb on - strand, within yggE at 3065.559 kb on - strand, within yggE at 3065.656 kb on - strand, within yggE at 3065.656 kb on - strand, within yggE at 3065.719 kb on - strand, within yggE at 3065.719 kb on - strand, within yggE at 3065.748 kb on + strand, within yggE at 3065.753 kb on + strand, within yggE at 3065.753 kb on + strand, within yggE at 3065.756 kb on - strand, within yggE at 3065.833 kb on - strand, within yggE at 3065.833 kb on - strand, within yggE at 3065.982 kb on - strand, within yggE at 3065.982 kb on - strand, within yggE at 3065.982 kb on - strand, within yggE at 3065.985 kb on + strand, within yggE at 3066.068 kb on + strand at 3066.325 kb on - strand, within argO at 3066.429 kb on + strand, within argO at 3066.468 kb on + strand, within argO at 3066.474 kb on + strand, within argO at 3066.474 kb on + strand, within argO at 3066.510 kb on + strand, within argO at 3066.518 kb on - strand, within argO at 3066.539 kb on + strand, within argO at 3066.555 kb on - strand, within argO at 3066.555 kb on - strand, within argO at 3066.729 kb on - strand, within argO at 3066.729 kb on - strand, within argO at 3066.731 kb on + strand, within argO at 3066.779 kb on + strand at 3066.782 kb on - strand at 3066.792 kb on - strand at 3066.862 kb on - strand at 3066.862 kb on - strand at 3066.950 kb on + strand at 3066.950 kb on + strand at 3066.960 kb on + strand at 3066.984 kb on - strand at 3067.002 kb on - strand at 3067.028 kb on + strand at 3067.029 kb on + strand at 3067.040 kb on - strand at 3067.040 kb on - strand at 3067.064 kb on - strand, within mscS at 3067.064 kb on - strand, within mscS at 3067.073 kb on - strand, within mscS at 3067.073 kb on - strand, within mscS at 3067.073 kb on - strand, within mscS at 3067.073 kb on - strand, within mscS at 3067.077 kb on + strand, within mscS at 3067.085 kb on - strand, within mscS at 3067.096 kb on + strand, within mscS at 3067.099 kb on + strand, within mscS at 3067.115 kb on - strand, within mscS at 3067.121 kb on + strand, within mscS at 3067.218 kb on + strand, within mscS at 3067.218 kb on + strand, within mscS at 3067.220 kb on - strand, within mscS at 3067.223 kb on + strand, within mscS at 3067.223 kb on + strand, within mscS at 3067.223 kb on + strand, within mscS at 3067.223 kb on + strand, within mscS at 3067.225 kb on - strand, within mscS at 3067.225 kb on - strand, within mscS at 3067.245 kb on - strand, within mscS at 3067.253 kb on - strand, within mscS at 3067.253 kb on - strand, within mscS at 3067.253 kb on - strand, within mscS at 3067.253 kb on - strand, within mscS at 3067.352 kb on + strand, within mscS at 3067.363 kb on - strand, within mscS at 3067.373 kb on - strand, within mscS at 3067.389 kb on + strand, within mscS at 3067.397 kb on - strand, within mscS at 3067.397 kb on - strand, within mscS at 3067.399 kb on + strand, within mscS at 3067.399 kb on + strand, within mscS at 3067.399 kb on + strand, within mscS at 3067.399 kb on + strand, within mscS at 3067.407 kb on - strand, within mscS at 3067.416 kb on - strand, within mscS at 3067.511 kb on + strand, within mscS at 3067.519 kb on - strand, within mscS at 3067.519 kb on - strand, within mscS at 3067.530 kb on + strand, within mscS at 3067.552 kb on + strand, within mscS at 3067.670 kb on - strand, within mscS at 3067.745 kb on + strand at 3067.745 kb on + strand at 3067.753 kb on + strand at 3067.788 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl|T7phage remove 3,065,226 - +1.1 3,065,244 + -0.2 3,065,245 - -0.3 3,065,259 + -0.4 3,065,270 - +0.6 3,065,284 + +0.0 3,065,315 + -1.1 3,065,327 + +0.8 3,065,327 + -0.9 3,065,327 + +0.1 3,065,335 - -0.7 3,065,381 + +0.9 3,065,410 + -1.3 3,065,411 - +0.1 3,065,418 - +0.7 3,065,430 + +0.4 3,065,466 + yggE b2922 0.14 +0.1 3,065,503 - yggE b2922 0.19 -0.9 3,065,508 + yggE b2922 0.20 +1.5 3,065,508 + yggE b2922 0.20 -0.2 3,065,516 - yggE b2922 0.21 +0.3 3,065,521 - yggE b2922 0.21 +0.1 3,065,521 - yggE b2922 0.21 -0.2 3,065,521 - yggE b2922 0.21 -1.1 3,065,549 + yggE b2922 0.25 +0.3 3,065,557 - yggE b2922 0.26 +0.4 3,065,557 - yggE b2922 0.26 -0.3 3,065,559 - yggE b2922 0.27 -1.1 3,065,656 - yggE b2922 0.40 -0.8 3,065,656 - yggE b2922 0.40 +0.3 3,065,719 - yggE b2922 0.48 -0.0 3,065,719 - yggE b2922 0.48 +0.1 3,065,748 + yggE b2922 0.52 -0.8 3,065,753 + yggE b2922 0.53 +0.5 3,065,753 + yggE b2922 0.53 +0.0 3,065,756 - yggE b2922 0.53 -0.5 3,065,833 - yggE b2922 0.64 +0.9 3,065,833 - yggE b2922 0.64 -2.2 3,065,982 - yggE b2922 0.84 -0.8 3,065,982 - yggE b2922 0.84 +1.1 3,065,982 - yggE b2922 0.84 +1.1 3,065,985 + yggE b2922 0.84 +0.0 3,066,068 + +0.3 3,066,325 - argO b2923 0.20 -0.2 3,066,429 + argO b2923 0.37 -0.6 3,066,468 + argO b2923 0.43 +1.1 3,066,474 + argO b2923 0.44 +0.9 3,066,474 + argO b2923 0.44 -0.3 3,066,510 + argO b2923 0.50 +1.0 3,066,518 - argO b2923 0.51 +0.6 3,066,539 + argO b2923 0.54 -0.1 3,066,555 - argO b2923 0.57 +0.1 3,066,555 - argO b2923 0.57 -0.4 3,066,729 - argO b2923 0.84 +0.8 3,066,729 - argO b2923 0.84 +0.7 3,066,731 + argO b2923 0.84 +0.2 3,066,779 + +1.2 3,066,782 - +0.1 3,066,792 - -0.8 3,066,862 - +0.4 3,066,862 - -1.3 3,066,950 + -0.5 3,066,950 + +0.2 3,066,960 + +0.1 3,066,984 - -0.2 3,067,002 - -1.1 3,067,028 + -0.6 3,067,029 + +0.6 3,067,040 - -0.1 3,067,040 - -0.4 3,067,064 - mscS b2924 0.11 +0.2 3,067,064 - mscS b2924 0.11 -0.9 3,067,073 - mscS b2924 0.12 -0.5 3,067,073 - mscS b2924 0.12 -0.8 3,067,073 - mscS b2924 0.12 +0.7 3,067,073 - mscS b2924 0.12 -0.2 3,067,077 + mscS b2924 0.13 +0.5 3,067,085 - mscS b2924 0.13 -0.5 3,067,096 + mscS b2924 0.15 -0.1 3,067,099 + mscS b2924 0.15 +0.1 3,067,115 - mscS b2924 0.17 -0.3 3,067,121 + mscS b2924 0.18 +0.3 3,067,218 + mscS b2924 0.29 +1.2 3,067,218 + mscS b2924 0.29 -0.2 3,067,220 - mscS b2924 0.29 -0.3 3,067,223 + mscS b2924 0.30 -1.9 3,067,223 + mscS b2924 0.30 -0.4 3,067,223 + mscS b2924 0.30 +0.0 3,067,223 + mscS b2924 0.30 -0.4 3,067,225 - mscS b2924 0.30 -0.6 3,067,225 - mscS b2924 0.30 -0.3 3,067,245 - mscS b2924 0.32 -0.2 3,067,253 - mscS b2924 0.33 -0.6 3,067,253 - mscS b2924 0.33 -0.0 3,067,253 - mscS b2924 0.33 -3.0 3,067,253 - mscS b2924 0.33 +0.3 3,067,352 + mscS b2924 0.44 +1.7 3,067,363 - mscS b2924 0.46 -0.2 3,067,373 - mscS b2924 0.47 +2.5 3,067,389 + mscS b2924 0.49 +0.2 3,067,397 - mscS b2924 0.50 +0.7 3,067,397 - mscS b2924 0.50 +0.5 3,067,399 + mscS b2924 0.50 +0.3 3,067,399 + mscS b2924 0.50 +0.5 3,067,399 + mscS b2924 0.50 -0.8 3,067,399 + mscS b2924 0.50 -1.6 3,067,407 - mscS b2924 0.51 -0.5 3,067,416 - mscS b2924 0.52 -1.0 3,067,511 + mscS b2924 0.63 -0.5 3,067,519 - mscS b2924 0.64 -0.4 3,067,519 - mscS b2924 0.64 +0.5 3,067,530 + mscS b2924 0.65 -0.2 3,067,552 + mscS b2924 0.68 -0.2 3,067,670 - mscS b2924 0.81 +0.9 3,067,745 + -0.7 3,067,745 + +1.0 3,067,753 + +0.2 3,067,788 - -0.4
Or see this region's nucleotide sequence