Experiment: NoPhageControl|T7phage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpoS and nlpD are separated by 62 nucleotides nlpD and pcm are separated by 139 nucleotides pcm and surE overlap by 7 nucleotides
b2741: rpoS - RNA polymerase sigma factor (NCBI), at 2,864,581 to 2,865,573
rpoS
b2742: nlpD - predicted outer membrane lipoprotein (NCBI), at 2,865,636 to 2,866,775
nlpD
b2743: pcm - protein-L-isoaspartate O-methyltransferase (NCBI), at 2,866,915 to 2,867,541
pcm
b2744: surE - acid phosphatase (NCBI), at 2,867,535 to 2,868,296
surE
Position (kb)
2865
2866
2867 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2864.641 kb on + strand at 2864.656 kb on - strand at 2864.698 kb on + strand, within rpoS at 2864.840 kb on - strand at 2864.866 kb on + strand, within rpoS at 2864.925 kb on + strand, within rpoS at 2864.925 kb on + strand, within rpoS at 2865.021 kb on + strand, within rpoS at 2865.037 kb on + strand, within rpoS at 2865.044 kb on + strand, within rpoS at 2865.047 kb on - strand, within rpoS at 2865.085 kb on - strand, within rpoS at 2865.116 kb on - strand, within rpoS at 2865.175 kb on + strand, within rpoS at 2865.190 kb on + strand, within rpoS at 2865.195 kb on + strand, within rpoS at 2865.198 kb on - strand, within rpoS at 2865.376 kb on - strand, within rpoS at 2865.389 kb on + strand, within rpoS at 2865.415 kb on + strand, within rpoS at 2865.447 kb on - strand, within rpoS at 2865.490 kb on - strand at 2865.512 kb on - strand at 2865.598 kb on - strand at 2865.598 kb on - strand at 2865.764 kb on - strand, within nlpD at 2865.788 kb on + strand, within nlpD at 2865.788 kb on + strand, within nlpD at 2865.805 kb on - strand, within nlpD at 2865.817 kb on - strand, within nlpD at 2865.867 kb on + strand, within nlpD at 2866.116 kb on + strand, within nlpD at 2866.116 kb on + strand, within nlpD at 2866.149 kb on + strand, within nlpD at 2866.172 kb on + strand, within nlpD at 2866.210 kb on + strand, within nlpD at 2866.212 kb on + strand, within nlpD at 2866.265 kb on - strand, within nlpD at 2866.380 kb on + strand, within nlpD at 2866.380 kb on + strand, within nlpD at 2866.414 kb on - strand, within nlpD at 2866.414 kb on - strand, within nlpD at 2866.436 kb on + strand, within nlpD at 2866.441 kb on + strand, within nlpD at 2866.463 kb on - strand, within nlpD at 2866.463 kb on - strand, within nlpD at 2866.511 kb on - strand, within nlpD at 2866.511 kb on - strand, within nlpD at 2866.658 kb on + strand, within nlpD at 2866.722 kb on - strand at 2866.836 kb on - strand at 2866.998 kb on + strand, within pcm at 2867.354 kb on + strand, within pcm at 2867.354 kb on + strand, within pcm at 2867.354 kb on + strand, within pcm at 2867.354 kb on + strand, within pcm at 2867.354 kb on + strand, within pcm at 2867.359 kb on - strand, within pcm at 2867.541 kb on - strand at 2867.541 kb on - strand at 2867.616 kb on - strand, within surE at 2867.623 kb on + strand, within surE at 2867.631 kb on + strand, within surE at 2867.672 kb on - strand, within surE at 2867.701 kb on + strand, within surE at 2867.709 kb on - strand, within surE at 2867.747 kb on + strand, within surE at 2867.747 kb on + strand, within surE
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl|T7phage remove 2,864,641 + -0.2 2,864,656 - +1.5 2,864,698 + rpoS b2741 0.12 +1.0 2,864,840 - +1.7 2,864,866 + rpoS b2741 0.29 +1.5 2,864,925 + rpoS b2741 0.35 +1.9 2,864,925 + rpoS b2741 0.35 +2.0 2,865,021 + rpoS b2741 0.44 +2.2 2,865,037 + rpoS b2741 0.46 +1.1 2,865,044 + rpoS b2741 0.47 +2.2 2,865,047 - rpoS b2741 0.47 +1.3 2,865,085 - rpoS b2741 0.51 +1.5 2,865,116 - rpoS b2741 0.54 +1.4 2,865,175 + rpoS b2741 0.60 +2.7 2,865,190 + rpoS b2741 0.61 +0.8 2,865,195 + rpoS b2741 0.62 -1.1 2,865,198 - rpoS b2741 0.62 -0.4 2,865,376 - rpoS b2741 0.80 +0.9 2,865,389 + rpoS b2741 0.81 +0.4 2,865,415 + rpoS b2741 0.84 +2.0 2,865,447 - rpoS b2741 0.87 +1.8 2,865,490 - +0.6 2,865,512 - +1.5 2,865,598 - +0.1 2,865,598 - +0.7 2,865,764 - nlpD b2742 0.11 +1.3 2,865,788 + nlpD b2742 0.13 +1.8 2,865,788 + nlpD b2742 0.13 +0.1 2,865,805 - nlpD b2742 0.15 -0.0 2,865,817 - nlpD b2742 0.16 +0.4 2,865,867 + nlpD b2742 0.20 +1.7 2,866,116 + nlpD b2742 0.42 +1.2 2,866,116 + nlpD b2742 0.42 +1.1 2,866,149 + nlpD b2742 0.45 +1.4 2,866,172 + nlpD b2742 0.47 +0.3 2,866,210 + nlpD b2742 0.50 +0.4 2,866,212 + nlpD b2742 0.51 +0.4 2,866,265 - nlpD b2742 0.55 -0.5 2,866,380 + nlpD b2742 0.65 +0.7 2,866,380 + nlpD b2742 0.65 -0.4 2,866,414 - nlpD b2742 0.68 +0.7 2,866,414 - nlpD b2742 0.68 -0.2 2,866,436 + nlpD b2742 0.70 +0.1 2,866,441 + nlpD b2742 0.71 -0.0 2,866,463 - nlpD b2742 0.73 +0.6 2,866,463 - nlpD b2742 0.73 -0.5 2,866,511 - nlpD b2742 0.77 -0.2 2,866,511 - nlpD b2742 0.77 -0.1 2,866,658 + nlpD b2742 0.90 +0.3 2,866,722 - +0.6 2,866,836 - -0.2 2,866,998 + pcm b2743 0.13 +0.6 2,867,354 + pcm b2743 0.70 +0.6 2,867,354 + pcm b2743 0.70 +0.6 2,867,354 + pcm b2743 0.70 +0.2 2,867,354 + pcm b2743 0.70 +0.1 2,867,354 + pcm b2743 0.70 -0.5 2,867,359 - pcm b2743 0.71 -1.2 2,867,541 - -0.3 2,867,541 - -0.6 2,867,616 - surE b2744 0.11 -1.7 2,867,623 + surE b2744 0.12 +0.3 2,867,631 + surE b2744 0.13 -1.5 2,867,672 - surE b2744 0.18 -0.3 2,867,701 + surE b2744 0.22 -0.5 2,867,709 - surE b2744 0.23 -2.1 2,867,747 + surE b2744 0.28 +0.8 2,867,747 + surE b2744 0.28 +0.2
Or see this region's nucleotide sequence