Experiment: NoPhageControl|T7phage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yddW and gadC are separated by 130 nucleotides gadC and gadB are separated by 155 nucleotides
b1491: yddW - predicted liprotein (NCBI), at 1,565,528 to 1,566,847
yddW
b1492: gadC - predicted glutamate:gamma-aminobutyric acid antiporter (NCBI), at 1,566,978 to 1,568,513
gadC
b1493: gadB - glutamate decarboxylase B, PLP-dependent (NCBI), at 1,568,669 to 1,570,069
gadB
Position (kb)
1566
1567
1568
1569 Strain fitness (log2 ratio)
-1
0
1 at 1566.047 kb on + strand, within yddW at 1566.127 kb on - strand, within yddW at 1566.158 kb on + strand, within yddW at 1566.244 kb on - strand, within yddW at 1566.298 kb on + strand, within yddW at 1566.403 kb on - strand, within yddW at 1566.507 kb on - strand, within yddW at 1566.507 kb on - strand, within yddW at 1566.594 kb on - strand, within yddW at 1566.685 kb on + strand, within yddW at 1566.768 kb on - strand at 1566.778 kb on - strand at 1566.964 kb on + strand at 1566.979 kb on - strand at 1566.998 kb on + strand at 1567.129 kb on + strand at 1567.143 kb on + strand, within gadC at 1567.143 kb on + strand, within gadC at 1567.206 kb on - strand, within gadC at 1567.206 kb on - strand, within gadC at 1567.212 kb on - strand, within gadC at 1567.212 kb on - strand, within gadC at 1567.401 kb on - strand, within gadC at 1567.558 kb on + strand, within gadC at 1567.795 kb on - strand, within gadC at 1567.894 kb on + strand, within gadC at 1567.894 kb on + strand, within gadC at 1567.920 kb on - strand, within gadC at 1567.987 kb on - strand, within gadC at 1568.041 kb on + strand, within gadC at 1568.119 kb on - strand, within gadC at 1568.119 kb on - strand, within gadC at 1568.164 kb on + strand, within gadC at 1568.186 kb on - strand, within gadC at 1568.186 kb on - strand, within gadC at 1568.280 kb on - strand, within gadC at 1568.280 kb on - strand, within gadC at 1568.387 kb on - strand at 1568.551 kb on + strand at 1568.658 kb on - strand at 1568.658 kb on - strand at 1568.690 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl|T7phage remove 1,566,047 + yddW b1491 0.39 -0.7 1,566,127 - yddW b1491 0.45 +0.1 1,566,158 + yddW b1491 0.48 -0.4 1,566,244 - yddW b1491 0.54 -0.3 1,566,298 + yddW b1491 0.58 -0.3 1,566,403 - yddW b1491 0.66 -0.1 1,566,507 - yddW b1491 0.74 +0.4 1,566,507 - yddW b1491 0.74 -0.2 1,566,594 - yddW b1491 0.81 -0.5 1,566,685 + yddW b1491 0.88 -0.6 1,566,768 - +0.2 1,566,778 - -0.2 1,566,964 + +0.8 1,566,979 - -0.4 1,566,998 + -0.9 1,567,129 + +0.2 1,567,143 + gadC b1492 0.11 +0.9 1,567,143 + gadC b1492 0.11 +0.1 1,567,206 - gadC b1492 0.15 +0.6 1,567,206 - gadC b1492 0.15 -0.0 1,567,212 - gadC b1492 0.15 +1.1 1,567,212 - gadC b1492 0.15 -0.0 1,567,401 - gadC b1492 0.28 +0.1 1,567,558 + gadC b1492 0.38 +0.7 1,567,795 - gadC b1492 0.53 +0.6 1,567,894 + gadC b1492 0.60 +1.1 1,567,894 + gadC b1492 0.60 +0.2 1,567,920 - gadC b1492 0.61 -0.7 1,567,987 - gadC b1492 0.66 +0.5 1,568,041 + gadC b1492 0.69 -0.3 1,568,119 - gadC b1492 0.74 +0.9 1,568,119 - gadC b1492 0.74 +1.5 1,568,164 + gadC b1492 0.77 +0.2 1,568,186 - gadC b1492 0.79 +1.4 1,568,186 - gadC b1492 0.79 +0.0 1,568,280 - gadC b1492 0.85 +0.1 1,568,280 - gadC b1492 0.85 +1.0 1,568,387 - +1.0 1,568,551 + -0.5 1,568,658 - -0.9 1,568,658 - +0.9 1,568,690 - -0.0
Or see this region's nucleotide sequence