Experiment: NoPhageControl|T7phage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yncE and ansP are separated by 112 nucleotides ansP and yncG are separated by 266 nucleotides yncG and yncH are separated by 75 nucleotides
b1452: yncE - hypothetical protein (NCBI), at 1,521,331 to 1,522,392
yncE
b1453: ansP - L-asparagine permease (VIMSS), at 1,522,505 to 1,524,004
ansP
b1454: yncG - predicted enzyme (NCBI), at 1,524,271 to 1,524,888
yncG
b1455: yncH - hypothetical protein (NCBI), at 1,524,964 to 1,525,176
yncH
Position (kb)
1522
1523
1524
1525 Strain fitness (log2 ratio)
-1
0
1
2 at 1521.525 kb on + strand, within yncE at 1521.525 kb on + strand, within yncE at 1521.556 kb on - strand, within yncE at 1521.593 kb on + strand, within yncE at 1521.593 kb on + strand, within yncE at 1521.642 kb on + strand, within yncE at 1521.660 kb on - strand, within yncE at 1521.660 kb on - strand, within yncE at 1521.932 kb on - strand, within yncE at 1522.035 kb on + strand, within yncE at 1522.067 kb on - strand, within yncE at 1522.186 kb on + strand, within yncE at 1522.403 kb on - strand at 1522.414 kb on - strand at 1522.664 kb on - strand, within ansP at 1522.740 kb on + strand, within ansP at 1522.856 kb on + strand, within ansP at 1523.330 kb on - strand, within ansP at 1523.402 kb on - strand, within ansP at 1523.402 kb on - strand, within ansP at 1523.604 kb on + strand, within ansP at 1523.604 kb on + strand, within ansP at 1523.629 kb on + strand, within ansP at 1523.902 kb on - strand at 1524.042 kb on - strand at 1524.042 kb on - strand at 1524.133 kb on - strand at 1524.133 kb on - strand at 1524.232 kb on - strand at 1524.235 kb on - strand at 1524.242 kb on - strand at 1524.288 kb on - strand at 1524.290 kb on - strand at 1524.432 kb on + strand, within yncG at 1524.472 kb on + strand, within yncG at 1524.574 kb on + strand, within yncG at 1524.609 kb on + strand, within yncG at 1524.632 kb on + strand, within yncG at 1524.704 kb on + strand, within yncG at 1524.753 kb on + strand, within yncG at 1524.753 kb on + strand, within yncG at 1524.763 kb on + strand, within yncG at 1524.763 kb on + strand, within yncG at 1524.768 kb on + strand, within yncG
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl|T7phage remove 1,521,525 + yncE b1452 0.18 -0.4 1,521,525 + yncE b1452 0.18 -0.2 1,521,556 - yncE b1452 0.21 -0.9 1,521,593 + yncE b1452 0.25 -0.3 1,521,593 + yncE b1452 0.25 -0.7 1,521,642 + yncE b1452 0.29 +0.9 1,521,660 - yncE b1452 0.31 -1.3 1,521,660 - yncE b1452 0.31 +2.1 1,521,932 - yncE b1452 0.57 +0.3 1,522,035 + yncE b1452 0.66 +0.5 1,522,067 - yncE b1452 0.69 +1.6 1,522,186 + yncE b1452 0.81 +0.0 1,522,403 - -0.2 1,522,414 - +0.0 1,522,664 - ansP b1453 0.11 -0.8 1,522,740 + ansP b1453 0.16 -0.0 1,522,856 + ansP b1453 0.23 +1.6 1,523,330 - ansP b1453 0.55 +0.4 1,523,402 - ansP b1453 0.60 -0.6 1,523,402 - ansP b1453 0.60 +0.6 1,523,604 + ansP b1453 0.73 +0.9 1,523,604 + ansP b1453 0.73 +0.7 1,523,629 + ansP b1453 0.75 -0.1 1,523,902 - -1.3 1,524,042 - -0.1 1,524,042 - +0.0 1,524,133 - +0.9 1,524,133 - +1.0 1,524,232 - -0.2 1,524,235 - -0.0 1,524,242 - +0.6 1,524,288 - +1.3 1,524,290 - -1.0 1,524,432 + yncG b1454 0.26 -0.6 1,524,472 + yncG b1454 0.33 -0.5 1,524,574 + yncG b1454 0.49 +1.3 1,524,609 + yncG b1454 0.55 -0.9 1,524,632 + yncG b1454 0.58 +2.1 1,524,704 + yncG b1454 0.70 +0.1 1,524,753 + yncG b1454 0.78 +2.1 1,524,753 + yncG b1454 0.78 -0.1 1,524,763 + yncG b1454 0.80 -0.4 1,524,763 + yncG b1454 0.80 -0.0 1,524,768 + yncG b1454 0.80 +0.1
Or see this region's nucleotide sequence