Strain Fitness in Escherichia coli BW25113 around b1787

Experiment: Goslar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaJ and yeaK are separated by 42 nucleotidesyeaK and b1788 are separated by 0 nucleotidesb1788 and yeaL are separated by 169 nucleotidesyeaL and yeaM overlap by 44 nucleotides b1786: yeaJ - orf, hypothetical protein (VIMSS), at 1,870,065 to 1,871,555 yeaJ b1787: yeaK - hypothetical protein (NCBI), at 1,871,598 to 1,872,101 yeaK b1788: b1788 - orf, hypothetical protein (VIMSS), at 1,872,102 to 1,872,206 b1788 b1789: yeaL - conserved inner membrane protein (NCBI), at 1,872,376 to 1,872,822 yeaL b1790: yeaM - predicted DNA-binding transcriptional regulator (NCBI), at 1,872,779 to 1,873,600 yeaM Position (kb) 1871 1872 1873Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 1870.602 kb on + strand, within yeaJat 1870.602 kb on + strand, within yeaJat 1870.604 kb on - strand, within yeaJat 1870.609 kb on + strand, within yeaJat 1870.609 kb on + strand, within yeaJat 1870.617 kb on - strand, within yeaJat 1870.619 kb on - strand, within yeaJat 1870.627 kb on + strand, within yeaJat 1870.683 kb on - strand, within yeaJat 1870.683 kb on - strand, within yeaJat 1870.711 kb on + strand, within yeaJat 1870.742 kb on + strand, within yeaJat 1870.742 kb on + strand, within yeaJat 1870.742 kb on + strand, within yeaJat 1870.748 kb on - strand, within yeaJat 1870.808 kb on + strand, within yeaJat 1870.808 kb on + strand, within yeaJat 1870.819 kb on - strand, within yeaJat 1870.823 kb on - strand, within yeaJat 1870.838 kb on - strand, within yeaJat 1870.843 kb on + strand, within yeaJat 1870.849 kb on + strand, within yeaJat 1870.861 kb on - strand, within yeaJat 1870.867 kb on - strand, within yeaJat 1870.872 kb on - strand, within yeaJat 1870.887 kb on + strand, within yeaJat 1870.890 kb on + strand, within yeaJat 1870.890 kb on - strand, within yeaJat 1870.925 kb on - strand, within yeaJat 1870.932 kb on + strand, within yeaJat 1870.939 kb on + strand, within yeaJat 1870.941 kb on + strand, within yeaJat 1870.948 kb on - strand, within yeaJat 1871.045 kb on + strand, within yeaJat 1871.045 kb on + strand, within yeaJat 1871.047 kb on + strand, within yeaJat 1871.047 kb on + strand, within yeaJat 1871.052 kb on + strand, within yeaJat 1871.085 kb on - strand, within yeaJat 1871.153 kb on - strand, within yeaJat 1871.217 kb on - strand, within yeaJat 1871.218 kb on + strand, within yeaJat 1871.253 kb on - strand, within yeaJat 1871.312 kb on + strand, within yeaJat 1871.335 kb on + strand, within yeaJat 1871.390 kb on + strand, within yeaJat 1871.396 kb on - strand, within yeaJat 1871.414 kb on + strandat 1871.414 kb on + strandat 1871.436 kb on + strandat 1871.483 kb on + strandat 1871.495 kb on + strandat 1871.495 kb on + strandat 1871.502 kb on - strandat 1871.534 kb on + strandat 1871.534 kb on + strandat 1871.534 kb on + strandat 1871.534 kb on + strandat 1871.551 kb on + strandat 1871.551 kb on + strandat 1871.581 kb on + strandat 1871.581 kb on + strandat 1871.734 kb on + strand, within yeaKat 1871.741 kb on - strand, within yeaKat 1871.746 kb on - strand, within yeaKat 1871.748 kb on + strand, within yeaKat 1871.748 kb on + strand, within yeaKat 1871.754 kb on - strand, within yeaKat 1871.754 kb on - strand, within yeaKat 1871.759 kb on + strand, within yeaKat 1871.790 kb on - strand, within yeaKat 1871.804 kb on - strand, within yeaKat 1871.823 kb on - strand, within yeaKat 1871.909 kb on - strand, within yeaKat 1871.909 kb on - strand, within yeaKat 1871.978 kb on - strand, within yeaKat 1872.285 kb on - strandat 1872.399 kb on - strandat 1872.443 kb on - strand, within yeaLat 1872.584 kb on + strand, within yeaLat 1872.606 kb on - strand, within yeaLat 1872.672 kb on - strand, within yeaLat 1872.672 kb on - strand, within yeaLat 1872.680 kb on + strand, within yeaLat 1872.680 kb on + strand, within yeaL

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Per-strain Table

Position Strand Gene LocusTag Fraction Goslar
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1,870,602 + yeaJ b1786 0.36 +2.2
1,870,602 + yeaJ b1786 0.36 +2.0
1,870,604 - yeaJ b1786 0.36 +6.0
1,870,609 + yeaJ b1786 0.36 +0.6
1,870,609 + yeaJ b1786 0.36 +1.9
1,870,617 - yeaJ b1786 0.37 +2.5
1,870,619 - yeaJ b1786 0.37 -0.6
1,870,627 + yeaJ b1786 0.38 +1.7
1,870,683 - yeaJ b1786 0.41 +2.5
1,870,683 - yeaJ b1786 0.41 +3.8
1,870,711 + yeaJ b1786 0.43 +2.2
1,870,742 + yeaJ b1786 0.45 +2.4
1,870,742 + yeaJ b1786 0.45 +1.8
1,870,742 + yeaJ b1786 0.45 +2.9
1,870,748 - yeaJ b1786 0.46 +3.6
1,870,808 + yeaJ b1786 0.50 -0.0
1,870,808 + yeaJ b1786 0.50 +3.3
1,870,819 - yeaJ b1786 0.51 +1.9
1,870,823 - yeaJ b1786 0.51 +2.3
1,870,838 - yeaJ b1786 0.52 +1.3
1,870,843 + yeaJ b1786 0.52 +1.0
1,870,849 + yeaJ b1786 0.53 +0.4
1,870,861 - yeaJ b1786 0.53 +2.0
1,870,867 - yeaJ b1786 0.54 +2.5
1,870,872 - yeaJ b1786 0.54 +1.9
1,870,887 + yeaJ b1786 0.55 +1.4
1,870,890 + yeaJ b1786 0.55 +2.8
1,870,890 - yeaJ b1786 0.55 +1.3
1,870,925 - yeaJ b1786 0.58 +3.4
1,870,932 + yeaJ b1786 0.58 +2.0
1,870,939 + yeaJ b1786 0.59 +2.8
1,870,941 + yeaJ b1786 0.59 +2.1
1,870,948 - yeaJ b1786 0.59 +2.8
1,871,045 + yeaJ b1786 0.66 +1.0
1,871,045 + yeaJ b1786 0.66 +2.2
1,871,047 + yeaJ b1786 0.66 +2.6
1,871,047 + yeaJ b1786 0.66 +0.9
1,871,052 + yeaJ b1786 0.66 +3.0
1,871,085 - yeaJ b1786 0.68 +0.7
1,871,153 - yeaJ b1786 0.73 +3.0
1,871,217 - yeaJ b1786 0.77 +1.4
1,871,218 + yeaJ b1786 0.77 +0.2
1,871,253 - yeaJ b1786 0.80 +3.1
1,871,312 + yeaJ b1786 0.84 +1.1
1,871,335 + yeaJ b1786 0.85 +0.5
1,871,390 + yeaJ b1786 0.89 +2.2
1,871,396 - yeaJ b1786 0.89 +2.3
1,871,414 + +5.0
1,871,414 + +2.4
1,871,436 + +2.2
1,871,483 + +0.0
1,871,495 + +1.2
1,871,495 + +1.3
1,871,502 - +2.1
1,871,534 + +1.5
1,871,534 + -0.2
1,871,534 + +2.8
1,871,534 + +3.0
1,871,551 + +0.9
1,871,551 + +0.3
1,871,581 + -0.0
1,871,581 + -1.5
1,871,734 + yeaK b1787 0.27 +0.8
1,871,741 - yeaK b1787 0.28 +0.3
1,871,746 - yeaK b1787 0.29 -0.9
1,871,748 + yeaK b1787 0.30 +0.6
1,871,748 + yeaK b1787 0.30 -1.2
1,871,754 - yeaK b1787 0.31 -1.5
1,871,754 - yeaK b1787 0.31 +1.1
1,871,759 + yeaK b1787 0.32 +0.3
1,871,790 - yeaK b1787 0.38 -0.9
1,871,804 - yeaK b1787 0.41 +1.2
1,871,823 - yeaK b1787 0.45 -0.0
1,871,909 - yeaK b1787 0.62 -1.3
1,871,909 - yeaK b1787 0.62 -1.5
1,871,978 - yeaK b1787 0.75 -0.5
1,872,285 - +0.4
1,872,399 - +1.2
1,872,443 - yeaL b1789 0.15 -1.0
1,872,584 + yeaL b1789 0.47 +0.3
1,872,606 - yeaL b1789 0.51 +0.2
1,872,672 - yeaL b1789 0.66 +0.4
1,872,672 - yeaL b1789 0.66 +1.9
1,872,680 + yeaL b1789 0.68 +0.7
1,872,680 + yeaL b1789 0.68 -0.7

Or see this region's nucleotide sequence