Experiment: Goslar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeaH and yeaI are separated by 146 nucleotides yeaI and yeaJ are separated by 180 nucleotides
b1784: yeaH - yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) , at 1,866,979 to 1,868,262
yeaH
b1785: yeaI - predicted diguanylate cyclase (NCBI), at 1,868,409 to 1,869,884
yeaI
b1786: yeaJ - orf, hypothetical protein (VIMSS), at 1,870,065 to 1,871,555
yeaJ
Position (kb)
1868
1869
1870 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 1867.578 kb on + strand, within yeaH at 1867.578 kb on + strand, within yeaH at 1867.694 kb on + strand, within yeaH at 1867.723 kb on + strand, within yeaH at 1867.723 kb on + strand at 1867.772 kb on - strand, within yeaH at 1867.803 kb on + strand, within yeaH at 1867.803 kb on + strand, within yeaH at 1867.843 kb on + strand, within yeaH at 1867.941 kb on + strand, within yeaH at 1867.984 kb on - strand, within yeaH at 1868.025 kb on - strand, within yeaH at 1868.179 kb on + strand at 1868.219 kb on + strand at 1868.224 kb on + strand at 1868.238 kb on + strand at 1868.238 kb on + strand at 1868.275 kb on + strand at 1869.468 kb on + strand, within yeaI at 1869.476 kb on - strand, within yeaI at 1869.479 kb on + strand, within yeaI at 1869.479 kb on + strand, within yeaI at 1869.479 kb on + strand, within yeaI at 1869.481 kb on + strand, within yeaI at 1869.489 kb on - strand, within yeaI at 1869.492 kb on - strand, within yeaI at 1869.531 kb on + strand, within yeaI at 1869.539 kb on + strand, within yeaI at 1869.539 kb on + strand, within yeaI at 1869.541 kb on + strand, within yeaI at 1869.541 kb on + strand, within yeaI at 1869.542 kb on - strand, within yeaI at 1869.545 kb on + strand, within yeaI at 1869.546 kb on + strand, within yeaI at 1869.546 kb on + strand, within yeaI at 1869.630 kb on + strand, within yeaI at 1869.653 kb on + strand, within yeaI at 1869.668 kb on + strand, within yeaI at 1869.718 kb on + strand, within yeaI at 1869.719 kb on + strand, within yeaI at 1869.719 kb on + strand, within yeaI at 1869.738 kb on - strand at 1869.760 kb on + strand at 1869.768 kb on - strand at 1869.768 kb on - strand at 1869.768 kb on - strand at 1869.771 kb on + strand at 1869.828 kb on + strand at 1869.828 kb on + strand at 1869.840 kb on - strand at 1869.870 kb on - strand at 1869.970 kb on + strand at 1869.999 kb on + strand at 1869.999 kb on + strand at 1870.051 kb on - strand at 1870.051 kb on - strand at 1870.170 kb on - strand at 1870.171 kb on - strand at 1870.234 kb on - strand, within yeaJ at 1870.234 kb on - strand, within yeaJ at 1870.261 kb on - strand, within yeaJ at 1870.272 kb on - strand, within yeaJ at 1870.279 kb on + strand, within yeaJ at 1870.291 kb on + strand, within yeaJ at 1870.291 kb on + strand, within yeaJ at 1870.348 kb on - strand, within yeaJ at 1870.356 kb on - strand, within yeaJ at 1870.385 kb on - strand, within yeaJ at 1870.387 kb on + strand, within yeaJ at 1870.389 kb on + strand, within yeaJ at 1870.389 kb on + strand, within yeaJ at 1870.392 kb on + strand, within yeaJ at 1870.392 kb on + strand, within yeaJ at 1870.404 kb on + strand, within yeaJ at 1870.404 kb on + strand, within yeaJ at 1870.407 kb on + strand, within yeaJ at 1870.445 kb on - strand, within yeaJ at 1870.445 kb on - strand, within yeaJ at 1870.464 kb on + strand, within yeaJ at 1870.464 kb on + strand, within yeaJ at 1870.472 kb on - strand, within yeaJ at 1870.474 kb on + strand, within yeaJ at 1870.474 kb on + strand, within yeaJ at 1870.483 kb on + strand, within yeaJ at 1870.485 kb on + strand, within yeaJ at 1870.485 kb on + strand, within yeaJ at 1870.495 kb on + strand, within yeaJ at 1870.495 kb on + strand, within yeaJ at 1870.500 kb on + strand, within yeaJ at 1870.503 kb on - strand, within yeaJ at 1870.503 kb on - strand, within yeaJ at 1870.509 kb on - strand, within yeaJ at 1870.574 kb on + strand, within yeaJ at 1870.588 kb on + strand, within yeaJ at 1870.602 kb on + strand, within yeaJ at 1870.602 kb on + strand, within yeaJ at 1870.604 kb on - strand, within yeaJ at 1870.609 kb on + strand, within yeaJ at 1870.609 kb on + strand, within yeaJ at 1870.617 kb on - strand, within yeaJ at 1870.619 kb on - strand, within yeaJ at 1870.627 kb on + strand, within yeaJ at 1870.683 kb on - strand, within yeaJ at 1870.683 kb on - strand, within yeaJ at 1870.711 kb on + strand, within yeaJ at 1870.742 kb on + strand, within yeaJ at 1870.742 kb on + strand, within yeaJ at 1870.742 kb on + strand, within yeaJ at 1870.748 kb on - strand, within yeaJ at 1870.808 kb on + strand, within yeaJ at 1870.808 kb on + strand, within yeaJ at 1870.819 kb on - strand, within yeaJ at 1870.823 kb on - strand, within yeaJ at 1870.838 kb on - strand, within yeaJ at 1870.843 kb on + strand, within yeaJ at 1870.849 kb on + strand, within yeaJ at 1870.861 kb on - strand, within yeaJ at 1870.867 kb on - strand, within yeaJ at 1870.872 kb on - strand, within yeaJ
Per-strain Table
Position Strand Gene LocusTag Fraction Goslar remove 1,867,578 + yeaH b1784 0.47 -2.2 1,867,578 + yeaH b1784 0.47 -1.0 1,867,694 + yeaH b1784 0.56 +0.2 1,867,723 + yeaH b1784 0.58 -0.5 1,867,723 + -0.6 1,867,772 - yeaH b1784 0.62 +0.3 1,867,803 + yeaH b1784 0.64 +0.3 1,867,803 + yeaH b1784 0.64 -1.3 1,867,843 + yeaH b1784 0.67 +0.8 1,867,941 + yeaH b1784 0.75 -1.0 1,867,984 - yeaH b1784 0.78 -0.6 1,868,025 - yeaH b1784 0.81 -0.2 1,868,179 + +0.8 1,868,219 + +1.5 1,868,224 + -2.3 1,868,238 + +1.0 1,868,238 + -0.7 1,868,275 + +3.0 1,869,468 + yeaI b1785 0.72 +0.7 1,869,476 - yeaI b1785 0.72 +3.0 1,869,479 + yeaI b1785 0.72 +0.7 1,869,479 + yeaI b1785 0.72 -2.5 1,869,479 + yeaI b1785 0.72 +3.0 1,869,481 + yeaI b1785 0.73 -0.2 1,869,489 - yeaI b1785 0.73 +3.0 1,869,492 - yeaI b1785 0.73 +1.4 1,869,531 + yeaI b1785 0.76 +1.0 1,869,539 + yeaI b1785 0.77 +3.0 1,869,539 + yeaI b1785 0.77 +1.4 1,869,541 + yeaI b1785 0.77 -0.6 1,869,541 + yeaI b1785 0.77 +0.4 1,869,542 - yeaI b1785 0.77 +3.0 1,869,545 + yeaI b1785 0.77 -1.4 1,869,546 + yeaI b1785 0.77 +0.7 1,869,546 + yeaI b1785 0.77 +3.0 1,869,630 + yeaI b1785 0.83 -0.6 1,869,653 + yeaI b1785 0.84 -0.2 1,869,668 + yeaI b1785 0.85 -1.0 1,869,718 + yeaI b1785 0.89 +1.4 1,869,719 + yeaI b1785 0.89 -0.0 1,869,719 + yeaI b1785 0.89 +1.1 1,869,738 - +0.9 1,869,760 + +0.6 1,869,768 - -0.3 1,869,768 - +3.0 1,869,768 - +2.0 1,869,771 + +0.2 1,869,828 + +2.0 1,869,828 + -1.3 1,869,840 - +1.6 1,869,870 - +3.0 1,869,970 + -0.0 1,869,999 + +0.2 1,869,999 + +0.4 1,870,051 - +0.9 1,870,051 - -1.2 1,870,170 - +1.6 1,870,171 - +1.3 1,870,234 - yeaJ b1786 0.11 +2.8 1,870,234 - yeaJ b1786 0.11 +2.6 1,870,261 - yeaJ b1786 0.13 +1.3 1,870,272 - yeaJ b1786 0.14 +2.2 1,870,279 + yeaJ b1786 0.14 +2.0 1,870,291 + yeaJ b1786 0.15 +2.2 1,870,291 + yeaJ b1786 0.15 +2.4 1,870,348 - yeaJ b1786 0.19 +2.2 1,870,356 - yeaJ b1786 0.20 +2.2 1,870,385 - yeaJ b1786 0.21 +2.0 1,870,387 + yeaJ b1786 0.22 +2.2 1,870,389 + yeaJ b1786 0.22 +2.2 1,870,389 + yeaJ b1786 0.22 +2.6 1,870,392 + yeaJ b1786 0.22 +2.3 1,870,392 + yeaJ b1786 0.22 +2.5 1,870,404 + yeaJ b1786 0.23 +2.0 1,870,404 + yeaJ b1786 0.23 +4.0 1,870,407 + yeaJ b1786 0.23 +2.5 1,870,445 - yeaJ b1786 0.25 +2.3 1,870,445 - yeaJ b1786 0.25 +3.0 1,870,464 + yeaJ b1786 0.27 +2.5 1,870,464 + yeaJ b1786 0.27 +3.2 1,870,472 - yeaJ b1786 0.27 +3.0 1,870,474 + yeaJ b1786 0.27 +1.9 1,870,474 + yeaJ b1786 0.27 +2.1 1,870,483 + yeaJ b1786 0.28 +2.3 1,870,485 + yeaJ b1786 0.28 +1.9 1,870,485 + yeaJ b1786 0.28 +2.3 1,870,495 + yeaJ b1786 0.29 +2.5 1,870,495 + yeaJ b1786 0.29 +2.7 1,870,500 + yeaJ b1786 0.29 +2.8 1,870,503 - yeaJ b1786 0.29 -0.2 1,870,503 - yeaJ b1786 0.29 +2.0 1,870,509 - yeaJ b1786 0.30 +0.7 1,870,574 + yeaJ b1786 0.34 +2.7 1,870,588 + yeaJ b1786 0.35 +1.9 1,870,602 + yeaJ b1786 0.36 +2.2 1,870,602 + yeaJ b1786 0.36 +2.0 1,870,604 - yeaJ b1786 0.36 +6.0 1,870,609 + yeaJ b1786 0.36 +0.6 1,870,609 + yeaJ b1786 0.36 +1.9 1,870,617 - yeaJ b1786 0.37 +2.5 1,870,619 - yeaJ b1786 0.37 -0.6 1,870,627 + yeaJ b1786 0.38 +1.7 1,870,683 - yeaJ b1786 0.41 +2.5 1,870,683 - yeaJ b1786 0.41 +3.8 1,870,711 + yeaJ b1786 0.43 +2.2 1,870,742 + yeaJ b1786 0.45 +2.4 1,870,742 + yeaJ b1786 0.45 +1.8 1,870,742 + yeaJ b1786 0.45 +2.9 1,870,748 - yeaJ b1786 0.46 +3.6 1,870,808 + yeaJ b1786 0.50 -0.0 1,870,808 + yeaJ b1786 0.50 +3.3 1,870,819 - yeaJ b1786 0.51 +1.9 1,870,823 - yeaJ b1786 0.51 +2.3 1,870,838 - yeaJ b1786 0.52 +1.3 1,870,843 + yeaJ b1786 0.52 +1.0 1,870,849 + yeaJ b1786 0.53 +0.4 1,870,861 - yeaJ b1786 0.53 +2.0 1,870,867 - yeaJ b1786 0.54 +2.5 1,870,872 - yeaJ b1786 0.54 +1.9
Or see this region's nucleotide sequence