Strain Fitness in Escherichia coli BW25113 around b3579

Experiment: HSDP4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	HSDP4
3,743,197	-	yiaN	b3578	0.29	+1.6
3,743,197	-	yiaN	b3578	0.29	+2.0
3,743,224	-	yiaN	b3578	0.31	-0.3
3,743,224	-	yiaN	b3578	0.31	-1.1
3,743,342	+	yiaN	b3578	0.40	+1.1
3,743,342	+	yiaN	b3578	0.40	+1.3
3,743,365	-	yiaN	b3578	0.42	-3.3
3,743,365	-	yiaN	b3578	0.42	-2.8
3,743,371	+	yiaN	b3578	0.43	-3.9
3,743,382	+	yiaN	b3578	0.43	+1.9
3,743,382	+	yiaN	b3578	0.43	-3.3
3,743,383	+	yiaN	b3578	0.44	+0.3
3,743,383	+	yiaN	b3578	0.44	+0.6
3,743,536	-	yiaN	b3578	0.55	+1.7
3,743,573	+	yiaN	b3578	0.58	-3.0
3,743,573	+	yiaN	b3578	0.58	-2.6
3,743,586	+	yiaN	b3578	0.59	-4.5
3,743,608	+	yiaN	b3578	0.61	-4.0
3,743,608	+	yiaN	b3578	0.61	-1.1
3,743,620	+	yiaN	b3578	0.62	-4.8
3,743,620	+	yiaN	b3578	0.62	+0.3
3,743,620	+	yiaN	b3578	0.62	+0.9
3,743,622	+	yiaN	b3578	0.62	-1.3
3,743,624	-	yiaN	b3578	0.62	-0.3
3,743,625	+	yiaN	b3578	0.62	+0.9
3,743,625	+	yiaN	b3578	0.62	+0.8
3,743,635	-	yiaN	b3578	0.63	-0.0
3,743,658	-	yiaN	b3578	0.65	-2.7
3,743,658	-	yiaN	b3578	0.65	+1.1
3,743,669	+	yiaN	b3578	0.66	-1.4
3,743,670	-	yiaN	b3578	0.66	-3.4
3,743,684	+	yiaN	b3578	0.67	+0.8
3,743,684	+	yiaN	b3578	0.67	-3.7
3,743,689	+	yiaN	b3578	0.67	+1.3
3,743,689	+	yiaN	b3578	0.67	-2.6
3,743,696	+	yiaN	b3578	0.68	+0.4
3,743,696	+	yiaN	b3578	0.68	-4.8
3,743,699	+	yiaN	b3578	0.68	-0.3
3,743,704	+	yiaN	b3578	0.69	-3.2
3,743,707	+	yiaN	b3578	0.69	-3.4
3,743,707	+	yiaN	b3578	0.69	+1.3
3,743,710	+	yiaN	b3578	0.69	+0.0
3,743,715	-	yiaN	b3578	0.69	-2.5
3,743,715	-	yiaN	b3578	0.69	-0.5
3,743,715	-	yiaN	b3578	0.69	+1.5
3,743,715	-	yiaN	b3578	0.69	-2.4
3,743,715	-	yiaN	b3578	0.69	-4.0
3,743,715	-	yiaN	b3578	0.69	-2.7
3,743,715	-	yiaN	b3578	0.69	-2.4
3,743,715	-	yiaN	b3578	0.69	-2.8
3,743,717	+	yiaN	b3578	0.70	-0.7
3,743,727	+	yiaN	b3578	0.70	+0.4
3,743,728	+	yiaN	b3578	0.71	-0.7
3,743,733	+	yiaN	b3578	0.71	+1.7
3,743,735	-	yiaN	b3578	0.71	-2.2
3,743,741	-	yiaN	b3578	0.72	+1.4
3,743,744	+	yiaN	b3578	0.72	-2.2
3,743,745	+	yiaN	b3578	0.72	+1.2
3,743,755	+	yiaN	b3578	0.73	-2.9
3,743,755	+	yiaN	b3578	0.73	+1.7
3,743,755	+	yiaN	b3578	0.73	-2.1
3,743,755	+	yiaN	b3578	0.73	+0.5
3,743,755	+	yiaN	b3578	0.73	-1.2
3,743,758	+	yiaN	b3578	0.73	-4.0
3,743,771	-	yiaN	b3578	0.74	+1.3
3,743,775	+	yiaN	b3578	0.74	-0.8
3,743,787	+	yiaN	b3578	0.75	-0.3
3,743,787	-	yiaN	b3578	0.75	+2.3
3,743,787	-	yiaN	b3578	0.75	+0.3
3,743,794	+	yiaN	b3578	0.76	+0.3
3,743,802	+	yiaN	b3578	0.76	-0.6
3,743,806	+	yiaN	b3578	0.77	-0.3
3,743,810	+	yiaN	b3578	0.77	-3.5
3,743,811	+	yiaN	b3578	0.77	-3.2
3,743,811	+	yiaN	b3578	0.77	-1.4
3,743,811	+	yiaN	b3578	0.77	+0.2
3,743,811	+	yiaN	b3578	0.77	+1.8
3,743,811	+	yiaN	b3578	0.77	-3.9
3,743,811	+	yiaN	b3578	0.77	-4.6
3,743,811	+	yiaN	b3578	0.77	-2.0
3,743,811	+	yiaN	b3578	0.77	-2.4
3,743,811	+	yiaN	b3578	0.77	-2.4
3,743,818	+	yiaN	b3578	0.78	+0.4
3,743,818	+	yiaN	b3578	0.78	-1.1
3,743,832	+	yiaN	b3578	0.79	+1.3
3,743,863	+	yiaN	b3578	0.81	-1.3
3,743,865	+	yiaN	b3578	0.81	-3.7
3,743,871	+	yiaN	b3578	0.82	+0.7
3,743,881	-	yiaN	b3578	0.82	+3.3
3,743,881	-	yiaN	b3578	0.82	+3.3
3,743,883	+	yiaN	b3578	0.83	-1.0
3,743,889	+	yiaN	b3578	0.83	+4.1
3,743,889	+	yiaN	b3578	0.83	-0.3
3,743,932	+	yiaN	b3578	0.86	-2.2
3,743,932	+	yiaN	b3578	0.86	-1.7
3,743,932	+	yiaN	b3578	0.86	+2.2
3,743,932	+	yiaN	b3578	0.86	-0.4
3,743,940	+	yiaN	b3578	0.87	-2.1
3,744,003	+				+1.3
3,744,010	-				+3.3
3,744,137	-				+0.6
3,744,140	-				-0.2
3,744,154	-				-0.8
3,744,165	-				-2.5
3,744,170	-				-3.5
3,744,170	-				+1.2
3,744,170	-				+1.3
3,744,170	-				-4.2
3,744,175	-				+0.1
3,744,180	-				-3.3
3,744,180	-				+0.4
3,744,187	-				-0.4
3,744,220	-	yiaO	b3579	0.10	+0.6
3,744,224	-	yiaO	b3579	0.11	-2.9
3,744,241	-	yiaO	b3579	0.13	+2.0
3,744,244	-	yiaO	b3579	0.13	-3.0
3,744,244	-	yiaO	b3579	0.13	-3.8
3,744,314	-	yiaO	b3579	0.20	-2.1
3,744,319	-	yiaO	b3579	0.20	-2.9
3,744,319	-	yiaO	b3579	0.20	-2.2
3,744,330	-	yiaO	b3579	0.22	-2.7
3,744,330	-	yiaO	b3579	0.22	-1.4
3,744,333	-	yiaO	b3579	0.22	-0.8
3,744,337	-	yiaO	b3579	0.22	-2.0
3,744,343	-	yiaO	b3579	0.23	+0.4
3,744,343	-	yiaO	b3579	0.23	-4.9
3,744,343	-	yiaO	b3579	0.23	-0.2
3,744,343	-	yiaO	b3579	0.23	-4.8
3,744,349	-	yiaO	b3579	0.24	+2.2
3,744,356	-	yiaO	b3579	0.24	-3.9
3,744,417	-	yiaO	b3579	0.30	+0.4
3,744,454	-	yiaO	b3579	0.34	-1.4
3,744,488	-	yiaO	b3579	0.38	+0.7
3,744,510	+	yiaO	b3579	0.40	-1.3
3,744,510	+	yiaO	b3579	0.40	-0.8
3,744,568	-	yiaO	b3579	0.46	+0.2
3,744,692	-	yiaO	b3579	0.58	-2.1
3,744,698	+	yiaO	b3579	0.59	+0.3
3,744,698	+	yiaO	b3579	0.59	+0.3
3,744,699	+	yiaO	b3579	0.59	+1.7
3,744,732	+	yiaO	b3579	0.62	-1.7
3,744,751	-	yiaO	b3579	0.64	-1.6
3,744,858	-	yiaO	b3579	0.75	+0.1
3,744,865	-	yiaO	b3579	0.76	+0.6
3,745,064	+				-0.8
3,745,064	+				-1.1
3,745,091	-				+1.0
3,745,091	-				-1.8
3,745,095	-				-3.2
3,745,163	+				+0.3
3,745,196	+				+1.1
3,745,196	+				-2.9
3,745,257	-	lyxK	b3580	0.10	+0.6
3,745,257	-	lyxK	b3580	0.10	-4.9
3,745,276	-	lyxK	b3580	0.11	-3.7
3,745,295	+	lyxK	b3580	0.13	-1.4
3,745,295	+	lyxK	b3580	0.13	-2.0
3,745,492	-	lyxK	b3580	0.26	+0.1
3,745,538	-	lyxK	b3580	0.29	-0.5
3,745,578	-	lyxK	b3580	0.31	+0.1
3,745,629	-	lyxK	b3580	0.35	+1.8
3,745,652	+	lyxK	b3580	0.36	+1.3
3,745,666	+	lyxK	b3580	0.37	+0.7
3,745,712	-	lyxK	b3580	0.40	+0.1
3,745,727	+	lyxK	b3580	0.41	-2.3
3,745,728	+	lyxK	b3580	0.41	-2.2
3,745,767	-	lyxK	b3580	0.44	-3.7
3,745,785	+	lyxK	b3580	0.45	+0.4
3,745,881	-	lyxK	b3580	0.52	-0.6
3,745,881	-	lyxK	b3580	0.52	-3.9
3,745,900	-	lyxK	b3580	0.53	-1.1
3,745,973	+	lyxK	b3580	0.58	-2.1
3,745,973	+	lyxK	b3580	0.58	-1.0
3,746,056	-	lyxK	b3580	0.63	+1.3
3,746,056	-	lyxK	b3580	0.63	-1.1
3,746,070	+	lyxK	b3580	0.64	-2.4
3,746,086	+	lyxK	b3580	0.65	-4.2