Strain Fitness in Escherichia coli BW25113 around b3073

Experiment: HSDP4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	HSDP4
3,216,521	-	aer	b3072	0.62	-3.1
3,216,521	-	aer	b3072	0.62	+2.3
3,216,531	-	aer	b3072	0.63	-0.2
3,216,597	-	aer	b3072	0.67	-0.8
3,216,707	+	aer	b3072	0.74	-4.5
3,216,759	+	aer	b3072	0.78	-1.1
3,216,759	+	aer	b3072	0.78	-3.9
3,216,808	+	aer	b3072	0.81	-2.9
3,216,808	+	aer	b3072	0.81	-0.3
3,216,958	+				-0.1
3,217,041	-				+0.6
3,217,041	-				-4.4
3,217,049	-				-3.9
3,217,086	+				-2.5
3,217,091	-				-0.0
3,217,091	-				-0.1
3,217,473	-				+0.8
3,217,638	-				+0.7
3,217,708	+	ygjG	b3073	0.14	-1.2
3,217,708	+	ygjG	b3073	0.14	+1.5
3,217,858	+	ygjG	b3073	0.25	-2.8
3,217,858	+	ygjG	b3073	0.25	-3.0
3,218,060	+	ygjG	b3073	0.39	+2.2
3,218,112	+	ygjG	b3073	0.43	-0.5
3,218,112	+	ygjG	b3073	0.43	-0.7
3,218,118	-	ygjG	b3073	0.44	-0.1
3,218,222	+	ygjG	b3073	0.51	-1.5
3,218,231	-	ygjG	b3073	0.52	-1.7
3,218,276	-	ygjG	b3073	0.55	-0.6
3,218,293	-	ygjG	b3073	0.56	-0.5
3,218,293	-	ygjG	b3073	0.56	+0.4
3,218,338	-	ygjG	b3073	0.60	+2.3
3,218,356	+	ygjG	b3073	0.61	+0.1
3,218,387	-	ygjG	b3073	0.63	-0.2
3,218,407	-	ygjG	b3073	0.65	-3.4
3,218,407	-	ygjG	b3073	0.65	-0.0
3,218,494	+	ygjG	b3073	0.71	-0.1
3,218,532	-	ygjG	b3073	0.74	+0.2
3,218,591	-	ygjG	b3073	0.78	-3.8
3,218,591	-	ygjG	b3073	0.78	+0.5
3,218,663	-	ygjG	b3073	0.83	-3.1
3,218,663	-	ygjG	b3073	0.83	+2.4
3,218,826	+				-4.8
3,218,833	-				-0.2
3,218,855	+				-4.8
3,218,959	+				-0.4
3,218,992	+	ygjH	b3074	0.17	-2.8
3,218,992	+	ygjH	b3074	0.17	-2.7
3,219,018	+	ygjH	b3074	0.24	-2.7
3,219,018	+	ygjH	b3074	0.24	-3.6
3,219,077	-	ygjH	b3074	0.42	+0.5
3,219,077	-	ygjH	b3074	0.42	+0.9
3,219,077	-	ygjH	b3074	0.42	-2.7
3,219,117	-	ygjH	b3074	0.54	-2.3
3,219,119	+	ygjH	b3074	0.55	+0.8
3,219,384	-				+3.7
3,219,384	-				+1.4
3,219,431	-				+0.3
3,219,462	+				-2.3
3,219,549	-				-3.3
3,219,549	-				-4.1
3,219,628	-	ebgR	b3075	0.14	+0.4
3,219,628	-	ebgR	b3075	0.14	+2.3
3,219,650	-	ebgR	b3075	0.16	+0.4
3,219,689	+	ebgR	b3075	0.20	-3.0
3,219,691	+	ebgR	b3075	0.21	+1.9
3,219,787	+	ebgR	b3075	0.30	-3.8
3,219,803	-	ebgR	b3075	0.32	-3.5
3,219,818	-	ebgR	b3075	0.34	-3.3
3,219,861	+	ebgR	b3075	0.38	+1.7