Strain Fitness in Escherichia coli BW25113 around b2678
Experiment: Calbicans
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Calbicans |
---|---|---|---|---|---|
remove | |||||
2,803,044 | + | proV | b2677 | 0.17 | +0.6 |
2,803,044 | + | proV | b2677 | 0.17 | +0.6 |
2,803,045 | + | proV | b2677 | 0.17 | -1.0 |
2,803,061 | - | proV | b2677 | 0.19 | +0.3 |
2,803,061 | - | proV | b2677 | 0.19 | -1.1 |
2,803,066 | + | proV | b2677 | 0.19 | -1.7 |
2,803,075 | - | proV | b2677 | 0.20 | +1.6 |
2,803,076 | - | proV | b2677 | 0.20 | -2.4 |
2,803,088 | + | proV | b2677 | 0.21 | -1.7 |
2,803,089 | + | proV | b2677 | 0.21 | +0.6 |
2,803,092 | - | proV | b2677 | 0.21 | -2.8 |
2,803,097 | - | proV | b2677 | 0.22 | -0.0 |
2,803,097 | - | proV | b2677 | 0.22 | +0.6 |
2,803,097 | - | proV | b2677 | 0.22 | -1.0 |
2,803,110 | - | proV | b2677 | 0.23 | -1.0 |
2,803,117 | + | proV | b2677 | 0.23 | +1.0 |
2,803,131 | + | proV | b2677 | 0.24 | +0.3 |
2,803,135 | + | proV | b2677 | 0.25 | -1.0 |
2,803,136 | + | proV | b2677 | 0.25 | -1.2 |
2,803,136 | + | proV | b2677 | 0.25 | -1.7 |
2,803,169 | + | proV | b2677 | 0.28 | -1.0 |
2,803,170 | + | proV | b2677 | 0.28 | -0.0 |
2,803,177 | - | proV | b2677 | 0.28 | -0.4 |
2,803,177 | - | proV | b2677 | 0.28 | -0.0 |
2,803,177 | - | proV | b2677 | 0.28 | -0.7 |
2,803,177 | - | proV | b2677 | 0.28 | -0.4 |
2,803,178 | - | proV | b2677 | 0.28 | -1.9 |
2,803,193 | + | proV | b2677 | 0.30 | +2.2 |
2,803,193 | + | proV | b2677 | 0.30 | +0.6 |
2,803,193 | + | proV | b2677 | 0.30 | -2.7 |
2,803,193 | + | proV | b2677 | 0.30 | -0.4 |
2,803,193 | + | proV | b2677 | 0.30 | -0.8 |
2,803,193 | + | proV | b2677 | 0.30 | +0.2 |
2,803,193 | + | proV | b2677 | 0.30 | +3.6 |
2,803,193 | + | proV | b2677 | 0.30 | +1.6 |
2,803,199 | - | proV | b2677 | 0.30 | +1.2 |
2,803,199 | - | proV | b2677 | 0.30 | +1.0 |
2,803,201 | - | proV | b2677 | 0.30 | +0.6 |
2,803,203 | + | proV | b2677 | 0.30 | +1.8 |
2,803,203 | + | proV | b2677 | 0.30 | +0.3 |
2,803,203 | + | proV | b2677 | 0.30 | -0.9 |
2,803,206 | + | proV | b2677 | 0.31 | -0.5 |
2,803,206 | + | proV | b2677 | 0.31 | -1.0 |
2,803,208 | + | proV | b2677 | 0.31 | -0.3 |
2,803,211 | - | proV | b2677 | 0.31 | -2.1 |
2,803,213 | + | proV | b2677 | 0.31 | -1.6 |
2,803,213 | + | proV | b2677 | 0.31 | +0.6 |
2,803,213 | + | proV | b2677 | 0.31 | -0.9 |
2,803,221 | - | proV | b2677 | 0.32 | +1.1 |
2,803,221 | - | proV | b2677 | 0.32 | -0.0 |
2,803,223 | + | proV | b2677 | 0.32 | -0.6 |
2,803,225 | + | proV | b2677 | 0.32 | +0.4 |
2,803,225 | + | proV | b2677 | 0.32 | -2.1 |
2,803,233 | - | proV | b2677 | 0.33 | -1.9 |
2,803,233 | - | proV | b2677 | 0.33 | -0.7 |
2,803,233 | - | proV | b2677 | 0.33 | +1.8 |
2,803,272 | + | proV | b2677 | 0.36 | -1.0 |
2,803,273 | + | proV | b2677 | 0.36 | -1.9 |
2,803,273 | + | proV | b2677 | 0.36 | -1.9 |
2,803,273 | + | proV | b2677 | 0.36 | -0.0 |
2,803,273 | + | proV | b2677 | 0.36 | +1.1 |
2,803,275 | + | proV | b2677 | 0.36 | +1.4 |
2,803,281 | - | proV | b2677 | 0.37 | -1.6 |
2,803,281 | - | proV | b2677 | 0.37 | -0.8 |
2,803,283 | + | proV | b2677 | 0.37 | +1.0 |
2,803,283 | + | proV | b2677 | 0.37 | +2.2 |
2,803,283 | + | proV | b2677 | 0.37 | +1.8 |
2,803,313 | + | proV | b2677 | 0.40 | -2.3 |
2,803,318 | + | proV | b2677 | 0.40 | -1.0 |
2,803,321 | - | proV | b2677 | 0.40 | -0.0 |
2,803,328 | + | proV | b2677 | 0.41 | +3.2 |
2,803,328 | + | proV | b2677 | 0.41 | -2.1 |
2,803,331 | + | proV | b2677 | 0.41 | -0.2 |
2,803,331 | + | proV | b2677 | 0.41 | +0.7 |
2,803,331 | + | proV | b2677 | 0.41 | -0.1 |
2,803,331 | + | proV | b2677 | 0.41 | -2.7 |
2,803,331 | + | proV | b2677 | 0.41 | +0.2 |
2,803,333 | + | proV | b2677 | 0.41 | +0.7 |
2,803,336 | - | proV | b2677 | 0.41 | -0.5 |
2,803,336 | - | proV | b2677 | 0.41 | -1.2 |
2,803,336 | - | proV | b2677 | 0.41 | +0.7 |
2,803,339 | - | proV | b2677 | 0.42 | -0.0 |
2,803,339 | - | proV | b2677 | 0.42 | +0.6 |
2,803,339 | - | proV | b2677 | 0.42 | -0.0 |
2,803,339 | - | proV | b2677 | 0.42 | +0.6 |
2,803,339 | - | proV | b2677 | 0.42 | -0.4 |
2,803,343 | + | proV | b2677 | 0.42 | -0.4 |
2,803,345 | + | proV | b2677 | 0.42 | +0.3 |
2,803,347 | - | proV | b2677 | 0.42 | +0.6 |
2,803,347 | - | proV | b2677 | 0.42 | -0.0 |
2,803,348 | + | proV | b2677 | 0.42 | -0.6 |
2,803,349 | - | proV | b2677 | 0.43 | +1.6 |
2,803,349 | - | proV | b2677 | 0.43 | -1.0 |
2,803,350 | + | proV | b2677 | 0.43 | -2.5 |
2,803,350 | + | proV | b2677 | 0.43 | -0.6 |
2,803,350 | + | proV | b2677 | 0.43 | +0.0 |
2,803,350 | + | proV | b2677 | 0.43 | +0.2 |
2,803,351 | + | proV | b2677 | 0.43 | -1.9 |
2,803,351 | + | proV | b2677 | 0.43 | +0.4 |
2,803,352 | + | proV | b2677 | 0.43 | +0.5 |
2,803,356 | + | proV | b2677 | 0.43 | +0.6 |
2,803,362 | + | proV | b2677 | 0.44 | -1.4 |
2,803,362 | + | proV | b2677 | 0.44 | -1.6 |
2,803,364 | - | proV | b2677 | 0.44 | +1.6 |
2,803,366 | + | proV | b2677 | 0.44 | -0.5 |
2,803,370 | - | proV | b2677 | 0.44 | +1.6 |
2,803,442 | + | proV | b2677 | 0.50 | -0.7 |
2,803,442 | + | proV | b2677 | 0.50 | -1.6 |
2,803,473 | + | proV | b2677 | 0.53 | -0.4 |
2,803,473 | + | proV | b2677 | 0.53 | -0.4 |
2,803,496 | - | proV | b2677 | 0.55 | +0.7 |
2,803,511 | + | proV | b2677 | 0.56 | +1.6 |
2,803,515 | - | proV | b2677 | 0.56 | -1.2 |
2,803,521 | + | proV | b2677 | 0.57 | -1.4 |
2,803,521 | + | proV | b2677 | 0.57 | -0.0 |
2,803,521 | + | proV | b2677 | 0.57 | +0.6 |
2,803,523 | + | proV | b2677 | 0.57 | -0.7 |
2,803,523 | + | proV | b2677 | 0.57 | -0.0 |
2,803,523 | + | proV | b2677 | 0.57 | +0.8 |
2,803,523 | + | proV | b2677 | 0.57 | +1.6 |
2,803,528 | - | proV | b2677 | 0.57 | -0.7 |
2,803,528 | - | proV | b2677 | 0.57 | -1.1 |
2,803,528 | - | proV | b2677 | 0.57 | -1.1 |
2,803,529 | - | proV | b2677 | 0.58 | -0.0 |
2,803,531 | - | proV | b2677 | 0.58 | +0.8 |
2,803,531 | - | proV | b2677 | 0.58 | -0.3 |
2,803,531 | - | proV | b2677 | 0.58 | -1.1 |
2,803,533 | - | proV | b2677 | 0.58 | -1.3 |
2,803,533 | - | proV | b2677 | 0.58 | -2.4 |
2,803,564 | + | proV | b2677 | 0.60 | +0.6 |
2,803,564 | + | proV | b2677 | 0.60 | +0.6 |
2,803,565 | + | proV | b2677 | 0.61 | -0.7 |
2,803,565 | + | proV | b2677 | 0.61 | -0.4 |
2,803,566 | + | proV | b2677 | 0.61 | +0.4 |
2,803,566 | + | proV | b2677 | 0.61 | +0.6 |
2,803,566 | + | proV | b2677 | 0.61 | -1.6 |
2,803,566 | + | proV | b2677 | 0.61 | -0.3 |
2,803,566 | + | proV | b2677 | 0.61 | +1.8 |
2,803,566 | + | proV | b2677 | 0.61 | +1.2 |
2,803,569 | - | proV | b2677 | 0.61 | +0.0 |
2,803,569 | - | proV | b2677 | 0.61 | -1.0 |
2,803,571 | - | proV | b2677 | 0.61 | -0.9 |
2,803,572 | - | proV | b2677 | 0.61 | -1.5 |
2,803,573 | - | proV | b2677 | 0.61 | +0.2 |
2,803,574 | - | proV | b2677 | 0.61 | -1.7 |
2,803,574 | - | proV | b2677 | 0.61 | -1.1 |
2,803,579 | - | proV | b2677 | 0.62 | +0.4 |
2,803,579 | - | proV | b2677 | 0.62 | -1.7 |
2,803,618 | + | proV | b2677 | 0.65 | -0.7 |
2,803,623 | + | proV | b2677 | 0.65 | +0.8 |
2,803,636 | + | proV | b2677 | 0.66 | -0.2 |
2,803,646 | - | proV | b2677 | 0.67 | -1.0 |
2,803,649 | - | proV | b2677 | 0.67 | -0.9 |
2,803,649 | - | proV | b2677 | 0.67 | -0.6 |
2,803,650 | - | proV | b2677 | 0.68 | -2.9 |
2,803,660 | - | proV | b2677 | 0.68 | -1.5 |
2,803,663 | - | proV | b2677 | 0.69 | -1.7 |
2,803,667 | + | proV | b2677 | 0.69 | -0.4 |
2,803,675 | - | proV | b2677 | 0.70 | -2.0 |
2,803,684 | - | proV | b2677 | 0.70 | -0.8 |
2,803,686 | - | proV | b2677 | 0.71 | -1.5 |
2,803,705 | - | proV | b2677 | 0.72 | -0.7 |
2,803,706 | - | proV | b2677 | 0.72 | -0.5 |
2,803,710 | + | proV | b2677 | 0.73 | -0.9 |
2,803,728 | - | proV | b2677 | 0.74 | -1.0 |
2,803,734 | - | proV | b2677 | 0.75 | +0.6 |
2,803,773 | + | proV | b2677 | 0.78 | +1.7 |
2,803,809 | - | proV | b2677 | 0.81 | -0.5 |
2,803,814 | - | proV | b2677 | 0.81 | +0.1 |
2,803,855 | + | proV | b2677 | 0.85 | -0.6 |
2,803,855 | + | proV | b2677 | 0.85 | -0.6 |
2,803,857 | - | proV | b2677 | 0.85 | +0.1 |
2,803,857 | - | proV | b2677 | 0.85 | -2.2 |
2,803,872 | - | proV | b2677 | 0.86 | -0.5 |
2,803,876 | + | proV | b2677 | 0.86 | -0.7 |
2,803,877 | + | proV | b2677 | 0.86 | -0.4 |
2,803,933 | - | -0.6 | |||
2,803,970 | - | -0.2 | |||
2,803,976 | - | -0.2 | |||
2,803,978 | - | +0.7 | |||
2,804,086 | - | -1.5 | |||
2,804,086 | - | -1.4 | |||
2,804,086 | - | +0.0 | |||
2,804,102 | + | -0.4 | |||
2,804,189 | + | proW | b2678 | 0.15 | -1.5 |
2,804,228 | - | proW | b2678 | 0.18 | +0.5 |
2,804,228 | - | proW | b2678 | 0.18 | -1.5 |
2,804,239 | + | proW | b2678 | 0.19 | -1.8 |
2,804,242 | + | proW | b2678 | 0.20 | -1.0 |
2,804,242 | + | proW | b2678 | 0.20 | -1.2 |
2,804,285 | - | proW | b2678 | 0.24 | -0.4 |
2,804,285 | - | proW | b2678 | 0.24 | +0.2 |
2,804,350 | - | proW | b2678 | 0.30 | -0.6 |
2,804,458 | - | proW | b2678 | 0.40 | -0.1 |
2,804,471 | - | proW | b2678 | 0.41 | -0.1 |
2,804,471 | - | proW | b2678 | 0.41 | +0.5 |
2,804,482 | - | proW | b2678 | 0.42 | -1.7 |
2,804,482 | - | proW | b2678 | 0.42 | -1.0 |
2,804,484 | + | proW | b2678 | 0.42 | -0.5 |
2,804,586 | - | proW | b2678 | 0.52 | -1.9 |
2,804,656 | - | proW | b2678 | 0.59 | -1.2 |
2,804,778 | + | proW | b2678 | 0.70 | +0.5 |
2,804,778 | + | proW | b2678 | 0.70 | -2.0 |
2,804,794 | + | proW | b2678 | 0.72 | -0.5 |
2,804,843 | + | proW | b2678 | 0.76 | -1.4 |
2,804,866 | - | proW | b2678 | 0.78 | -1.3 |
2,804,910 | - | proW | b2678 | 0.82 | -1.1 |
2,805,096 | + | -0.7 | |||
2,805,179 | - | -1.2 | |||
2,805,368 | - | proX | b2679 | 0.22 | -0.1 |
2,805,477 | + | proX | b2679 | 0.33 | -0.6 |
2,805,689 | - | proX | b2679 | 0.54 | +0.4 |
2,805,713 | + | proX | b2679 | 0.56 | +0.3 |
2,805,721 | - | proX | b2679 | 0.57 | +0.2 |
2,805,751 | - | proX | b2679 | 0.60 | -0.1 |
2,805,891 | - | proX | b2679 | 0.74 | -0.6 |
2,805,891 | - | proX | b2679 | 0.74 | +0.6 |
2,805,922 | + | proX | b2679 | 0.77 | +0.9 |
2,806,078 | + | -0.4 |
Or see this region's nucleotide sequence