Strain Fitness in Escherichia coli BW25113 around b2678

Experiment: Calbicans

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntproV and proW overlap by 8 nucleotidesproW and proX are separated by 57 nucleotides b2677: proV - glycine betaine transporter subunit (NCBI), at 2,802,837 to 2,804,039 proV b2678: proW - glycine betaine transporter subunit (NCBI), at 2,804,032 to 2,805,096 proW b2679: proX - glycine betaine transporter subunit (NCBI), at 2,805,154 to 2,806,146 proX Position (kb) 2804 2805 2806Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2803.044 kb on + strand, within proVat 2803.044 kb on + strand, within proVat 2803.045 kb on + strand, within proVat 2803.061 kb on - strand, within proVat 2803.061 kb on - strand, within proVat 2803.066 kb on + strand, within proVat 2803.075 kb on - strand, within proVat 2803.076 kb on - strand, within proVat 2803.088 kb on + strand, within proVat 2803.089 kb on + strand, within proVat 2803.092 kb on - strand, within proVat 2803.097 kb on - strand, within proVat 2803.097 kb on - strand, within proVat 2803.097 kb on - strand, within proVat 2803.110 kb on - strand, within proVat 2803.117 kb on + strand, within proVat 2803.131 kb on + strand, within proVat 2803.135 kb on + strand, within proVat 2803.136 kb on + strand, within proVat 2803.136 kb on + strand, within proVat 2803.169 kb on + strand, within proVat 2803.170 kb on + strand, within proVat 2803.177 kb on - strand, within proVat 2803.177 kb on - strand, within proVat 2803.177 kb on - strand, within proVat 2803.177 kb on - strand, within proVat 2803.178 kb on - strand, within proVat 2803.193 kb on + strand, within proVat 2803.193 kb on + strand, within proVat 2803.193 kb on + strand, within proVat 2803.193 kb on + strand, within proVat 2803.193 kb on + strand, within proVat 2803.193 kb on + strand, within proVat 2803.193 kb on + strand, within proVat 2803.193 kb on + strand, within proVat 2803.199 kb on - strand, within proVat 2803.199 kb on - strand, within proVat 2803.201 kb on - strand, within proVat 2803.203 kb on + strand, within proVat 2803.203 kb on + strand, within proVat 2803.203 kb on + strand, within proVat 2803.206 kb on + strand, within proVat 2803.206 kb on + strand, within proVat 2803.208 kb on + strand, within proVat 2803.211 kb on - strand, within proVat 2803.213 kb on + strand, within proVat 2803.213 kb on + strand, within proVat 2803.213 kb on + strand, within proVat 2803.221 kb on - strand, within proVat 2803.221 kb on - strand, within proVat 2803.223 kb on + strand, within proVat 2803.225 kb on + strand, within proVat 2803.225 kb on + strand, within proVat 2803.233 kb on - strand, within proVat 2803.233 kb on - strand, within proVat 2803.233 kb on - strand, within proVat 2803.272 kb on + strand, within proVat 2803.273 kb on + strand, within proVat 2803.273 kb on + strand, within proVat 2803.273 kb on + strand, within proVat 2803.273 kb on + strand, within proVat 2803.275 kb on + strand, within proVat 2803.281 kb on - strand, within proVat 2803.281 kb on - strand, within proVat 2803.283 kb on + strand, within proVat 2803.283 kb on + strand, within proVat 2803.283 kb on + strand, within proVat 2803.313 kb on + strand, within proVat 2803.318 kb on + strand, within proVat 2803.321 kb on - strand, within proVat 2803.328 kb on + strand, within proVat 2803.328 kb on + strand, within proVat 2803.331 kb on + strand, within proVat 2803.331 kb on + strand, within proVat 2803.331 kb on + strand, within proVat 2803.331 kb on + strand, within proVat 2803.331 kb on + strand, within proVat 2803.333 kb on + strand, within proVat 2803.336 kb on - strand, within proVat 2803.336 kb on - strand, within proVat 2803.336 kb on - strand, within proVat 2803.339 kb on - strand, within proVat 2803.339 kb on - strand, within proVat 2803.339 kb on - strand, within proVat 2803.339 kb on - strand, within proVat 2803.339 kb on - strand, within proVat 2803.343 kb on + strand, within proVat 2803.345 kb on + strand, within proVat 2803.347 kb on - strand, within proVat 2803.347 kb on - strand, within proVat 2803.348 kb on + strand, within proVat 2803.349 kb on - strand, within proVat 2803.349 kb on - strand, within proVat 2803.350 kb on + strand, within proVat 2803.350 kb on + strand, within proVat 2803.350 kb on + strand, within proVat 2803.350 kb on + strand, within proVat 2803.351 kb on + strand, within proVat 2803.351 kb on + strand, within proVat 2803.352 kb on + strand, within proVat 2803.356 kb on + strand, within proVat 2803.362 kb on + strand, within proVat 2803.362 kb on + strand, within proVat 2803.364 kb on - strand, within proVat 2803.366 kb on + strand, within proVat 2803.370 kb on - strand, within proVat 2803.442 kb on + strand, within proVat 2803.442 kb on + strand, within proVat 2803.473 kb on + strand, within proVat 2803.473 kb on + strand, within proVat 2803.496 kb on - strand, within proVat 2803.511 kb on + strand, within proVat 2803.515 kb on - strand, within proVat 2803.521 kb on + strand, within proVat 2803.521 kb on + strand, within proVat 2803.521 kb on + strand, within proVat 2803.523 kb on + strand, within proVat 2803.523 kb on + strand, within proVat 2803.523 kb on + strand, within proVat 2803.523 kb on + strand, within proVat 2803.528 kb on - strand, within proVat 2803.528 kb on - strand, within proVat 2803.528 kb on - strand, within proVat 2803.529 kb on - strand, within proVat 2803.531 kb on - strand, within proVat 2803.531 kb on - strand, within proVat 2803.531 kb on - strand, within proVat 2803.533 kb on - strand, within proVat 2803.533 kb on - strand, within proVat 2803.564 kb on + strand, within proVat 2803.564 kb on + strand, within proVat 2803.565 kb on + strand, within proVat 2803.565 kb on + strand, within proVat 2803.566 kb on + strand, within proVat 2803.566 kb on + strand, within proVat 2803.566 kb on + strand, within proVat 2803.566 kb on + strand, within proVat 2803.566 kb on + strand, within proVat 2803.566 kb on + strand, within proVat 2803.569 kb on - strand, within proVat 2803.569 kb on - strand, within proVat 2803.571 kb on - strand, within proVat 2803.572 kb on - strand, within proVat 2803.573 kb on - strand, within proVat 2803.574 kb on - strand, within proVat 2803.574 kb on - strand, within proVat 2803.579 kb on - strand, within proVat 2803.579 kb on - strand, within proVat 2803.618 kb on + strand, within proVat 2803.623 kb on + strand, within proVat 2803.636 kb on + strand, within proVat 2803.646 kb on - strand, within proVat 2803.649 kb on - strand, within proVat 2803.649 kb on - strand, within proVat 2803.650 kb on - strand, within proVat 2803.660 kb on - strand, within proVat 2803.663 kb on - strand, within proVat 2803.667 kb on + strand, within proVat 2803.675 kb on - strand, within proVat 2803.684 kb on - strand, within proVat 2803.686 kb on - strand, within proVat 2803.705 kb on - strand, within proVat 2803.706 kb on - strand, within proVat 2803.710 kb on + strand, within proVat 2803.728 kb on - strand, within proVat 2803.734 kb on - strand, within proVat 2803.773 kb on + strand, within proVat 2803.809 kb on - strand, within proVat 2803.814 kb on - strand, within proVat 2803.855 kb on + strand, within proVat 2803.855 kb on + strand, within proVat 2803.857 kb on - strand, within proVat 2803.857 kb on - strand, within proVat 2803.872 kb on - strand, within proVat 2803.876 kb on + strand, within proVat 2803.877 kb on + strand, within proVat 2803.933 kb on - strandat 2803.970 kb on - strandat 2803.976 kb on - strandat 2803.978 kb on - strandat 2804.086 kb on - strandat 2804.086 kb on - strandat 2804.086 kb on - strandat 2804.102 kb on + strandat 2804.189 kb on + strand, within proWat 2804.228 kb on - strand, within proWat 2804.228 kb on - strand, within proWat 2804.239 kb on + strand, within proWat 2804.242 kb on + strand, within proWat 2804.242 kb on + strand, within proWat 2804.285 kb on - strand, within proWat 2804.285 kb on - strand, within proWat 2804.350 kb on - strand, within proWat 2804.458 kb on - strand, within proWat 2804.471 kb on - strand, within proWat 2804.471 kb on - strand, within proWat 2804.482 kb on - strand, within proWat 2804.482 kb on - strand, within proWat 2804.484 kb on + strand, within proWat 2804.586 kb on - strand, within proWat 2804.656 kb on - strand, within proWat 2804.778 kb on + strand, within proWat 2804.778 kb on + strand, within proWat 2804.794 kb on + strand, within proWat 2804.843 kb on + strand, within proWat 2804.866 kb on - strand, within proWat 2804.910 kb on - strand, within proWat 2805.096 kb on + strandat 2805.179 kb on - strandat 2805.368 kb on - strand, within proXat 2805.477 kb on + strand, within proXat 2805.689 kb on - strand, within proXat 2805.713 kb on + strand, within proXat 2805.721 kb on - strand, within proXat 2805.751 kb on - strand, within proXat 2805.891 kb on - strand, within proXat 2805.891 kb on - strand, within proXat 2805.922 kb on + strand, within proXat 2806.078 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Calbicans
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2,803,044 + proV b2677 0.17 +0.6
2,803,044 + proV b2677 0.17 +0.6
2,803,045 + proV b2677 0.17 -1.0
2,803,061 - proV b2677 0.19 +0.3
2,803,061 - proV b2677 0.19 -1.1
2,803,066 + proV b2677 0.19 -1.7
2,803,075 - proV b2677 0.20 +1.6
2,803,076 - proV b2677 0.20 -2.4
2,803,088 + proV b2677 0.21 -1.7
2,803,089 + proV b2677 0.21 +0.6
2,803,092 - proV b2677 0.21 -2.8
2,803,097 - proV b2677 0.22 -0.0
2,803,097 - proV b2677 0.22 +0.6
2,803,097 - proV b2677 0.22 -1.0
2,803,110 - proV b2677 0.23 -1.0
2,803,117 + proV b2677 0.23 +1.0
2,803,131 + proV b2677 0.24 +0.3
2,803,135 + proV b2677 0.25 -1.0
2,803,136 + proV b2677 0.25 -1.2
2,803,136 + proV b2677 0.25 -1.7
2,803,169 + proV b2677 0.28 -1.0
2,803,170 + proV b2677 0.28 -0.0
2,803,177 - proV b2677 0.28 -0.4
2,803,177 - proV b2677 0.28 -0.0
2,803,177 - proV b2677 0.28 -0.7
2,803,177 - proV b2677 0.28 -0.4
2,803,178 - proV b2677 0.28 -1.9
2,803,193 + proV b2677 0.30 +2.2
2,803,193 + proV b2677 0.30 +0.6
2,803,193 + proV b2677 0.30 -2.7
2,803,193 + proV b2677 0.30 -0.4
2,803,193 + proV b2677 0.30 -0.8
2,803,193 + proV b2677 0.30 +0.2
2,803,193 + proV b2677 0.30 +3.6
2,803,193 + proV b2677 0.30 +1.6
2,803,199 - proV b2677 0.30 +1.2
2,803,199 - proV b2677 0.30 +1.0
2,803,201 - proV b2677 0.30 +0.6
2,803,203 + proV b2677 0.30 +1.8
2,803,203 + proV b2677 0.30 +0.3
2,803,203 + proV b2677 0.30 -0.9
2,803,206 + proV b2677 0.31 -0.5
2,803,206 + proV b2677 0.31 -1.0
2,803,208 + proV b2677 0.31 -0.3
2,803,211 - proV b2677 0.31 -2.1
2,803,213 + proV b2677 0.31 -1.6
2,803,213 + proV b2677 0.31 +0.6
2,803,213 + proV b2677 0.31 -0.9
2,803,221 - proV b2677 0.32 +1.1
2,803,221 - proV b2677 0.32 -0.0
2,803,223 + proV b2677 0.32 -0.6
2,803,225 + proV b2677 0.32 +0.4
2,803,225 + proV b2677 0.32 -2.1
2,803,233 - proV b2677 0.33 -1.9
2,803,233 - proV b2677 0.33 -0.7
2,803,233 - proV b2677 0.33 +1.8
2,803,272 + proV b2677 0.36 -1.0
2,803,273 + proV b2677 0.36 -1.9
2,803,273 + proV b2677 0.36 -1.9
2,803,273 + proV b2677 0.36 -0.0
2,803,273 + proV b2677 0.36 +1.1
2,803,275 + proV b2677 0.36 +1.4
2,803,281 - proV b2677 0.37 -1.6
2,803,281 - proV b2677 0.37 -0.8
2,803,283 + proV b2677 0.37 +1.0
2,803,283 + proV b2677 0.37 +2.2
2,803,283 + proV b2677 0.37 +1.8
2,803,313 + proV b2677 0.40 -2.3
2,803,318 + proV b2677 0.40 -1.0
2,803,321 - proV b2677 0.40 -0.0
2,803,328 + proV b2677 0.41 +3.2
2,803,328 + proV b2677 0.41 -2.1
2,803,331 + proV b2677 0.41 -0.2
2,803,331 + proV b2677 0.41 +0.7
2,803,331 + proV b2677 0.41 -0.1
2,803,331 + proV b2677 0.41 -2.7
2,803,331 + proV b2677 0.41 +0.2
2,803,333 + proV b2677 0.41 +0.7
2,803,336 - proV b2677 0.41 -0.5
2,803,336 - proV b2677 0.41 -1.2
2,803,336 - proV b2677 0.41 +0.7
2,803,339 - proV b2677 0.42 -0.0
2,803,339 - proV b2677 0.42 +0.6
2,803,339 - proV b2677 0.42 -0.0
2,803,339 - proV b2677 0.42 +0.6
2,803,339 - proV b2677 0.42 -0.4
2,803,343 + proV b2677 0.42 -0.4
2,803,345 + proV b2677 0.42 +0.3
2,803,347 - proV b2677 0.42 +0.6
2,803,347 - proV b2677 0.42 -0.0
2,803,348 + proV b2677 0.42 -0.6
2,803,349 - proV b2677 0.43 +1.6
2,803,349 - proV b2677 0.43 -1.0
2,803,350 + proV b2677 0.43 -2.5
2,803,350 + proV b2677 0.43 -0.6
2,803,350 + proV b2677 0.43 +0.0
2,803,350 + proV b2677 0.43 +0.2
2,803,351 + proV b2677 0.43 -1.9
2,803,351 + proV b2677 0.43 +0.4
2,803,352 + proV b2677 0.43 +0.5
2,803,356 + proV b2677 0.43 +0.6
2,803,362 + proV b2677 0.44 -1.4
2,803,362 + proV b2677 0.44 -1.6
2,803,364 - proV b2677 0.44 +1.6
2,803,366 + proV b2677 0.44 -0.5
2,803,370 - proV b2677 0.44 +1.6
2,803,442 + proV b2677 0.50 -0.7
2,803,442 + proV b2677 0.50 -1.6
2,803,473 + proV b2677 0.53 -0.4
2,803,473 + proV b2677 0.53 -0.4
2,803,496 - proV b2677 0.55 +0.7
2,803,511 + proV b2677 0.56 +1.6
2,803,515 - proV b2677 0.56 -1.2
2,803,521 + proV b2677 0.57 -1.4
2,803,521 + proV b2677 0.57 -0.0
2,803,521 + proV b2677 0.57 +0.6
2,803,523 + proV b2677 0.57 -0.7
2,803,523 + proV b2677 0.57 -0.0
2,803,523 + proV b2677 0.57 +0.8
2,803,523 + proV b2677 0.57 +1.6
2,803,528 - proV b2677 0.57 -0.7
2,803,528 - proV b2677 0.57 -1.1
2,803,528 - proV b2677 0.57 -1.1
2,803,529 - proV b2677 0.58 -0.0
2,803,531 - proV b2677 0.58 +0.8
2,803,531 - proV b2677 0.58 -0.3
2,803,531 - proV b2677 0.58 -1.1
2,803,533 - proV b2677 0.58 -1.3
2,803,533 - proV b2677 0.58 -2.4
2,803,564 + proV b2677 0.60 +0.6
2,803,564 + proV b2677 0.60 +0.6
2,803,565 + proV b2677 0.61 -0.7
2,803,565 + proV b2677 0.61 -0.4
2,803,566 + proV b2677 0.61 +0.4
2,803,566 + proV b2677 0.61 +0.6
2,803,566 + proV b2677 0.61 -1.6
2,803,566 + proV b2677 0.61 -0.3
2,803,566 + proV b2677 0.61 +1.8
2,803,566 + proV b2677 0.61 +1.2
2,803,569 - proV b2677 0.61 +0.0
2,803,569 - proV b2677 0.61 -1.0
2,803,571 - proV b2677 0.61 -0.9
2,803,572 - proV b2677 0.61 -1.5
2,803,573 - proV b2677 0.61 +0.2
2,803,574 - proV b2677 0.61 -1.7
2,803,574 - proV b2677 0.61 -1.1
2,803,579 - proV b2677 0.62 +0.4
2,803,579 - proV b2677 0.62 -1.7
2,803,618 + proV b2677 0.65 -0.7
2,803,623 + proV b2677 0.65 +0.8
2,803,636 + proV b2677 0.66 -0.2
2,803,646 - proV b2677 0.67 -1.0
2,803,649 - proV b2677 0.67 -0.9
2,803,649 - proV b2677 0.67 -0.6
2,803,650 - proV b2677 0.68 -2.9
2,803,660 - proV b2677 0.68 -1.5
2,803,663 - proV b2677 0.69 -1.7
2,803,667 + proV b2677 0.69 -0.4
2,803,675 - proV b2677 0.70 -2.0
2,803,684 - proV b2677 0.70 -0.8
2,803,686 - proV b2677 0.71 -1.5
2,803,705 - proV b2677 0.72 -0.7
2,803,706 - proV b2677 0.72 -0.5
2,803,710 + proV b2677 0.73 -0.9
2,803,728 - proV b2677 0.74 -1.0
2,803,734 - proV b2677 0.75 +0.6
2,803,773 + proV b2677 0.78 +1.7
2,803,809 - proV b2677 0.81 -0.5
2,803,814 - proV b2677 0.81 +0.1
2,803,855 + proV b2677 0.85 -0.6
2,803,855 + proV b2677 0.85 -0.6
2,803,857 - proV b2677 0.85 +0.1
2,803,857 - proV b2677 0.85 -2.2
2,803,872 - proV b2677 0.86 -0.5
2,803,876 + proV b2677 0.86 -0.7
2,803,877 + proV b2677 0.86 -0.4
2,803,933 - -0.6
2,803,970 - -0.2
2,803,976 - -0.2
2,803,978 - +0.7
2,804,086 - -1.5
2,804,086 - -1.4
2,804,086 - +0.0
2,804,102 + -0.4
2,804,189 + proW b2678 0.15 -1.5
2,804,228 - proW b2678 0.18 +0.5
2,804,228 - proW b2678 0.18 -1.5
2,804,239 + proW b2678 0.19 -1.8
2,804,242 + proW b2678 0.20 -1.0
2,804,242 + proW b2678 0.20 -1.2
2,804,285 - proW b2678 0.24 -0.4
2,804,285 - proW b2678 0.24 +0.2
2,804,350 - proW b2678 0.30 -0.6
2,804,458 - proW b2678 0.40 -0.1
2,804,471 - proW b2678 0.41 -0.1
2,804,471 - proW b2678 0.41 +0.5
2,804,482 - proW b2678 0.42 -1.7
2,804,482 - proW b2678 0.42 -1.0
2,804,484 + proW b2678 0.42 -0.5
2,804,586 - proW b2678 0.52 -1.9
2,804,656 - proW b2678 0.59 -1.2
2,804,778 + proW b2678 0.70 +0.5
2,804,778 + proW b2678 0.70 -2.0
2,804,794 + proW b2678 0.72 -0.5
2,804,843 + proW b2678 0.76 -1.4
2,804,866 - proW b2678 0.78 -1.3
2,804,910 - proW b2678 0.82 -1.1
2,805,096 + -0.7
2,805,179 - -1.2
2,805,368 - proX b2679 0.22 -0.1
2,805,477 + proX b2679 0.33 -0.6
2,805,689 - proX b2679 0.54 +0.4
2,805,713 + proX b2679 0.56 +0.3
2,805,721 - proX b2679 0.57 +0.2
2,805,751 - proX b2679 0.60 -0.1
2,805,891 - proX b2679 0.74 -0.6
2,805,891 - proX b2679 0.74 +0.6
2,805,922 + proX b2679 0.77 +0.9
2,806,078 + -0.4

Or see this region's nucleotide sequence