Strain Fitness in Escherichia coli BW25113 around b3990

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
4,187,774	+				+1.0
4,187,774	+				+0.3
4,187,793	+				-1.1
4,187,896	+	htrC	b3989	0.16	-0.4
4,187,904	-	htrC	b3989	0.18	+1.2
4,187,904	-	htrC	b3989	0.18	+0.8
4,187,916	-	htrC	b3989	0.20	+0.3
4,187,949	+	htrC	b3989	0.26	+0.0
4,187,957	-	htrC	b3989	0.27	-0.3
4,187,957	-	htrC	b3989	0.27	-0.2
4,187,994	-	htrC	b3989	0.34	+0.2
4,187,994	-	htrC	b3989	0.34	+0.6
4,188,013	+	htrC	b3989	0.38	-0.9
4,188,013	+	htrC	b3989	0.38	+0.7
4,188,034	-	htrC	b3989	0.42	-0.0
4,188,034	-	htrC	b3989	0.42	+0.9
4,188,049	+	htrC	b3989	0.44	-0.1
4,188,066	-	htrC	b3989	0.48	-1.2
4,188,087	-	htrC	b3989	0.51	+0.1
4,188,087	-	htrC	b3989	0.51	+0.1
4,188,087	-	htrC	b3989	0.51	+0.8
4,188,130	+	htrC	b3989	0.59	-0.2
4,188,150	+	htrC	b3989	0.63	+0.4
4,188,160	+	htrC	b3989	0.65	-3.1
4,188,168	-	htrC	b3989	0.66	-0.4
4,188,168	-	htrC	b3989	0.66	-0.3
4,188,196	-	htrC	b3989	0.72	-1.9
4,188,239	+	htrC	b3989	0.80	-0.2
4,188,309	-				-0.8
4,188,309	-				+1.6
4,188,365	-				-2.1
4,188,365	-				-0.9
4,188,565	+				-0.0
4,188,579	-				-0.1
4,188,751	-				-0.6
4,188,765	-				-0.2
4,188,812	+				-0.5
4,188,870	+				-1.6
4,188,899	-	thiH	b3990	0.12	-0.5
4,189,035	-	thiH	b3990	0.24	-0.4
4,189,048	+	thiH	b3990	0.26	-1.2
4,189,056	-	thiH	b3990	0.26	-0.7
4,189,073	-	thiH	b3990	0.28	+0.4
4,189,133	-	thiH	b3990	0.33	+0.3
4,189,334	-	thiH	b3990	0.51	-2.6
4,189,351	-	thiH	b3990	0.52	+0.3
4,189,351	-	thiH	b3990	0.52	-3.3
4,189,362	-	thiH	b3990	0.53	-0.9
4,189,372	-	thiH	b3990	0.54	-0.3
4,189,372	-	thiH	b3990	0.54	-2.0
4,189,429	+	thiH	b3990	0.59	-0.7
4,189,429	-	thiH	b3990	0.59	-0.9
4,189,429	-	thiH	b3990	0.59	-2.6
4,189,495	+	thiH	b3990	0.65	-2.3
4,189,506	+	thiH	b3990	0.66	-3.2
4,189,508	+	thiH	b3990	0.66	-0.2
4,189,543	-	thiH	b3990	0.69	-1.8
4,189,543	-	thiH	b3990	0.69	-1.4
4,189,724	+	thiH	b3990	0.85	-3.3
4,189,737	-	thiH	b3990	0.86	-2.4
4,189,737	-	thiH	b3990	0.86	-0.1
4,189,759	-	thiH	b3990	0.88	-1.7
4,189,759	-	thiH	b3990	0.88	+0.2
4,190,005	-	thiG	b3991	0.15	-1.5
4,190,005	-	thiG	b3991	0.15	-1.2
4,190,187	-	thiG	b3991	0.39	-1.8
4,190,187	-	thiG	b3991	0.39	+0.6
4,190,253	+	thiG	b3991	0.47	-1.3
4,190,267	-	thiG	b3991	0.49	+0.6
4,190,267	-	thiG	b3991	0.49	-1.4
4,190,270	+	thiG	b3991	0.50	-0.7
4,190,270	+	thiG	b3991	0.50	-1.6
4,190,278	-	thiG	b3991	0.51	-1.5
4,190,278	-	thiG	b3991	0.51	-1.5
4,190,287	-	thiG	b3991	0.52	-2.3
4,190,306	-	thiG	b3991	0.54	-1.5
4,190,306	-	thiG	b3991	0.54	-2.8
4,190,404	+	thiG	b3991	0.67	-3.9
4,190,412	-	thiG	b3991	0.68	-2.1
4,190,528	-	thiG	b3991	0.83	-0.0
4,190,579	+	thiG	b3991	0.90	-3.0
4,190,581	+	thiG	b3991	0.90	-4.6
4,190,581	+	thiG	b3991	0.90	-5.2
4,190,584	-				-0.8
4,190,586	-				-3.0
4,190,791	+	thiS	b4407	0.65	-1.3
4,190,820	+	thiS	b4407	0.80	-1.3
4,190,830	+	thiS	b4407	0.85	-1.5
4,190,860	-				-0.5