Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt serC and aroA are separated by 70 nucleotides aroA and ycaL are separated by 168 nucleotides
b0907: serC - phosphoserine aminotransferase (NCBI), at 956,876 to 957,964
serC
b0908: aroA - 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI), at 958,035 to 959,318
aroA
b0909: ycaL - putative heat shock protein (VIMSS), at 959,487 to 960,251
ycaL
Position (kb) 958
959
960 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 957.064 kb on + strand, within serC at 957.257 kb on - strand, within serC at 957.265 kb on + strand, within serC at 957.265 kb on + strand, within serC at 957.405 kb on + strand, within serC at 957.504 kb on + strand, within serC at 957.526 kb on + strand, within serC at 957.579 kb on + strand, within serC at 957.594 kb on - strand, within serC at 957.700 kb on + strand, within serC at 957.700 kb on + strand, within serC at 957.855 kb on + strand, within serC at 957.855 kb on + strand, within serC at 957.912 kb on + strand at 957.912 kb on + strand at 957.920 kb on - strand at 958.024 kb on - strand at 958.027 kb on - strand at 958.064 kb on - strand at 958.179 kb on + strand, within aroA at 958.222 kb on + strand, within aroA at 958.275 kb on + strand, within aroA at 958.283 kb on - strand, within aroA at 958.293 kb on + strand, within aroA at 958.301 kb on - strand, within aroA at 958.353 kb on + strand, within aroA at 958.403 kb on - strand, within aroA at 958.422 kb on - strand, within aroA at 958.437 kb on - strand, within aroA at 958.501 kb on + strand, within aroA at 958.531 kb on - strand, within aroA at 958.531 kb on - strand, within aroA at 958.552 kb on + strand, within aroA at 958.552 kb on + strand, within aroA at 958.721 kb on + strand, within aroA at 958.728 kb on - strand, within aroA at 958.730 kb on - strand, within aroA at 958.738 kb on - strand, within aroA at 958.738 kb on - strand, within aroA at 958.794 kb on + strand, within aroA at 958.794 kb on + strand, within aroA at 958.810 kb on + strand, within aroA at 958.810 kb on + strand, within aroA at 958.825 kb on + strand, within aroA at 958.833 kb on - strand, within aroA at 958.833 kb on - strand, within aroA at 958.922 kb on - strand, within aroA at 958.922 kb on - strand, within aroA at 958.932 kb on + strand, within aroA at 958.932 kb on + strand, within aroA at 958.934 kb on + strand, within aroA at 958.942 kb on - strand, within aroA at 959.025 kb on - strand, within aroA at 959.034 kb on + strand, within aroA at 959.042 kb on - strand, within aroA at 959.042 kb on - strand, within aroA at 959.080 kb on + strand, within aroA at 959.299 kb on + strand at 959.304 kb on + strand at 959.529 kb on - strand at 959.542 kb on + strand at 959.551 kb on - strand at 959.551 kb on - strand at 959.560 kb on + strand at 959.613 kb on + strand, within ycaL at 959.621 kb on - strand, within ycaL at 959.621 kb on - strand, within ycaL at 959.629 kb on + strand, within ycaL at 959.661 kb on + strand, within ycaL at 959.792 kb on + strand, within ycaL at 959.800 kb on - strand, within ycaL at 959.911 kb on + strand, within ycaL at 960.118 kb on - strand, within ycaL at 960.152 kb on - strand, within ycaL at 960.170 kb on + strand, within ycaL at 960.197 kb on + strand at 960.200 kb on - strand at 960.223 kb on + strand at 960.312 kb on + strand at 960.312 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 957,064 + serC b0907 0.17 -5.2 957,257 - serC b0907 0.35 -1.1 957,265 + serC b0907 0.36 -3.1 957,265 + serC b0907 0.36 -2.9 957,405 + serC b0907 0.49 -3.7 957,504 + serC b0907 0.58 -1.4 957,526 + serC b0907 0.60 -2.1 957,579 + serC b0907 0.65 -4.9 957,594 - serC b0907 0.66 -5.7 957,700 + serC b0907 0.76 -1.5 957,700 + serC b0907 0.76 -3.6 957,855 + serC b0907 0.90 -1.4 957,855 + serC b0907 0.90 -3.5 957,912 + -1.8 957,912 + -3.0 957,920 - -2.5 958,024 - -1.0 958,027 - +0.5 958,064 - +0.3 958,179 + aroA b0908 0.11 -3.0 958,222 + aroA b0908 0.15 -4.2 958,275 + aroA b0908 0.19 -2.6 958,283 - aroA b0908 0.19 +0.3 958,293 + aroA b0908 0.20 -3.9 958,301 - aroA b0908 0.21 -2.3 958,353 + aroA b0908 0.25 -1.6 958,403 - aroA b0908 0.29 -1.3 958,422 - aroA b0908 0.30 -1.2 958,437 - aroA b0908 0.31 -0.0 958,501 + aroA b0908 0.36 -1.9 958,531 - aroA b0908 0.39 -1.6 958,531 - aroA b0908 0.39 -4.4 958,552 + aroA b0908 0.40 +2.2 958,552 + aroA b0908 0.40 -1.4 958,721 + aroA b0908 0.53 -0.3 958,728 - aroA b0908 0.54 -3.3 958,730 - aroA b0908 0.54 -0.6 958,738 - aroA b0908 0.55 -3.9 958,738 - aroA b0908 0.55 -1.7 958,794 + aroA b0908 0.59 -3.3 958,794 + aroA b0908 0.59 -2.1 958,810 + aroA b0908 0.60 -2.6 958,810 + aroA b0908 0.60 -3.4 958,825 + aroA b0908 0.62 -0.4 958,833 - aroA b0908 0.62 -1.8 958,833 - aroA b0908 0.62 -0.8 958,922 - aroA b0908 0.69 -3.2 958,922 - aroA b0908 0.69 +1.4 958,932 + aroA b0908 0.70 -3.4 958,932 + aroA b0908 0.70 +0.2 958,934 + aroA b0908 0.70 -2.8 958,942 - aroA b0908 0.71 -1.4 959,025 - aroA b0908 0.77 -1.6 959,034 + aroA b0908 0.78 -1.1 959,042 - aroA b0908 0.78 -0.1 959,042 - aroA b0908 0.78 -0.7 959,080 + aroA b0908 0.81 -0.9 959,299 + +0.1 959,304 + -1.1 959,529 - -0.1 959,542 + -0.2 959,551 - +1.5 959,551 - -1.5 959,560 + -1.4 959,613 + ycaL b0909 0.16 -3.8 959,621 - ycaL b0909 0.18 +0.3 959,621 - ycaL b0909 0.18 +0.4 959,629 + ycaL b0909 0.19 -0.5 959,661 + ycaL b0909 0.23 -0.7 959,792 + ycaL b0909 0.40 -0.2 959,800 - ycaL b0909 0.41 -0.7 959,911 + ycaL b0909 0.55 -4.0 960,118 - ycaL b0909 0.82 -0.3 960,152 - ycaL b0909 0.87 -0.8 960,170 + ycaL b0909 0.89 +0.9 960,197 + +0.0 960,200 - +2.1 960,223 + +0.2 960,312 + +0.5 960,312 + +1.3
Or see this region's nucleotide sequence