Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yadD and panC are separated by 73 nucleotides panC and panB are separated by 11 nucleotides panB and yadC are separated by 113 nucleotides
b0132: yadD - predicted transposase (NCBI), at 146,968 to 147,870
yadD
b0133: panC - pantoate--beta-alanine ligase (NCBI), at 147,944 to 148,795
panC
b0134: panB - 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI), at 148,807 to 149,601
panB
b0135: yadC - predicted fimbrial-like adhesin protein (NCBI), at 149,715 to 150,953
yadC
Position (kb) 148
149
150 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 147.820 kb on - strand at 147.820 kb on - strand at 147.901 kb on - strand at 147.954 kb on - strand at 147.984 kb on - strand at 147.984 kb on - strand at 147.999 kb on - strand at 148.026 kb on + strand at 148.042 kb on - strand, within panC at 148.042 kb on - strand, within panC at 148.063 kb on + strand, within panC at 148.063 kb on + strand, within panC at 148.202 kb on + strand, within panC at 148.205 kb on + strand, within panC at 148.205 kb on + strand, within panC at 148.215 kb on - strand, within panC at 148.215 kb on - strand, within panC at 148.236 kb on + strand, within panC at 148.259 kb on - strand, within panC at 148.376 kb on - strand, within panC at 148.376 kb on - strand, within panC at 148.385 kb on - strand, within panC at 148.463 kb on + strand, within panC at 148.484 kb on - strand, within panC at 148.488 kb on + strand, within panC at 148.547 kb on + strand, within panC at 148.570 kb on - strand, within panC at 148.570 kb on - strand, within panC at 148.573 kb on - strand, within panC at 148.624 kb on - strand, within panC at 148.624 kb on - strand, within panC at 148.643 kb on + strand, within panC at 148.787 kb on + strand at 148.787 kb on + strand at 149.073 kb on + strand, within panB at 149.079 kb on + strand, within panB at 149.112 kb on + strand, within panB at 149.197 kb on + strand, within panB at 149.197 kb on + strand, within panB at 149.282 kb on - strand, within panB at 149.295 kb on + strand, within panB at 149.297 kb on + strand, within panB at 149.391 kb on - strand, within panB at 149.416 kb on - strand, within panB at 149.438 kb on - strand, within panB at 149.438 kb on - strand, within panB at 149.475 kb on + strand, within panB at 149.518 kb on + strand, within panB at 149.524 kb on + strand at 149.524 kb on - strand at 149.524 kb on - strand at 149.532 kb on - strand at 149.597 kb on + strand at 149.653 kb on + strand at 149.662 kb on + strand at 149.667 kb on + strand at 149.667 kb on + strand at 149.677 kb on + strand at 149.677 kb on + strand at 149.680 kb on - strand at 149.693 kb on + strand at 149.693 kb on + strand at 149.693 kb on - strand at 149.693 kb on - strand at 149.694 kb on + strand at 149.696 kb on + strand at 149.701 kb on + strand at 149.701 kb on - strand at 149.704 kb on + strand at 149.718 kb on + strand at 149.718 kb on + strand at 149.718 kb on + strand at 149.718 kb on - strand at 149.737 kb on + strand at 149.737 kb on + strand at 149.737 kb on + strand at 149.755 kb on - strand at 149.756 kb on + strand at 149.762 kb on + strand at 149.775 kb on + strand at 149.775 kb on + strand at 149.778 kb on - strand at 149.786 kb on + strand at 149.802 kb on + strand at 149.810 kb on - strand at 149.812 kb on + strand at 149.812 kb on + strand at 149.812 kb on + strand at 149.812 kb on + strand at 149.816 kb on + strand at 149.816 kb on + strand at 149.818 kb on + strand at 149.834 kb on + strand at 149.834 kb on + strand at 149.837 kb on - strand at 149.839 kb on + strand, within yadC at 149.847 kb on - strand, within yadC at 149.847 kb on - strand, within yadC at 149.849 kb on + strand, within yadC at 149.859 kb on - strand, within yadC at 149.862 kb on - strand, within yadC at 149.879 kb on - strand, within yadC at 149.906 kb on + strand, within yadC at 149.906 kb on + strand, within yadC at 149.907 kb on - strand, within yadC at 149.907 kb on - strand, within yadC at 149.907 kb on - strand, within yadC at 149.943 kb on + strand, within yadC at 149.943 kb on + strand, within yadC at 149.946 kb on + strand, within yadC at 149.952 kb on + strand, within yadC at 149.952 kb on + strand, within yadC at 149.952 kb on - strand, within yadC at 149.957 kb on + strand, within yadC at 149.958 kb on + strand, within yadC at 149.960 kb on - strand, within yadC at 149.960 kb on - strand, within yadC at 149.960 kb on - strand, within yadC at 149.960 kb on - strand, within yadC at 149.962 kb on - strand, within yadC at 149.965 kb on + strand, within yadC at 149.969 kb on + strand, within yadC at 149.978 kb on + strand, within yadC at 149.990 kb on + strand, within yadC at 149.990 kb on + strand, within yadC at 149.990 kb on + strand, within yadC at 149.998 kb on - strand, within yadC at 150.012 kb on + strand, within yadC at 150.014 kb on + strand, within yadC at 150.014 kb on + strand, within yadC at 150.018 kb on + strand, within yadC at 150.018 kb on + strand, within yadC at 150.135 kb on - strand, within yadC at 150.156 kb on + strand, within yadC at 150.156 kb on + strand, within yadC at 150.156 kb on + strand, within yadC at 150.159 kb on + strand, within yadC at 150.164 kb on + strand, within yadC at 150.167 kb on - strand, within yadC at 150.170 kb on + strand, within yadC at 150.177 kb on - strand, within yadC at 150.179 kb on + strand, within yadC at 150.179 kb on + strand, within yadC at 150.179 kb on + strand, within yadC at 150.179 kb on + strand, within yadC at 150.179 kb on + strand, within yadC at 150.179 kb on + strand, within yadC at 150.179 kb on + strand, within yadC at 150.186 kb on + strand, within yadC at 150.187 kb on - strand, within yadC at 150.187 kb on - strand, within yadC at 150.226 kb on + strand, within yadC at 150.257 kb on + strand, within yadC at 150.259 kb on + strand, within yadC at 150.263 kb on + strand, within yadC at 150.269 kb on + strand, within yadC at 150.269 kb on + strand, within yadC at 150.269 kb on + strand, within yadC at 150.276 kb on + strand, within yadC at 150.276 kb on + strand, within yadC at 150.277 kb on + strand, within yadC at 150.277 kb on + strand, within yadC at 150.277 kb on - strand, within yadC at 150.277 kb on - strand, within yadC at 150.283 kb on + strand, within yadC at 150.326 kb on - strand, within yadC at 150.327 kb on - strand, within yadC at 150.376 kb on + strand, within yadC at 150.389 kb on + strand, within yadC at 150.389 kb on + strand, within yadC at 150.391 kb on + strand, within yadC at 150.391 kb on + strand, within yadC at 150.391 kb on + strand, within yadC at 150.393 kb on + strand, within yadC at 150.397 kb on - strand, within yadC at 150.420 kb on + strand, within yadC at 150.438 kb on + strand, within yadC at 150.446 kb on + strand, within yadC at 150.453 kb on + strand, within yadC at 150.459 kb on + strand, within yadC at 150.535 kb on + strand, within yadC at 150.539 kb on + strand, within yadC at 150.539 kb on + strand, within yadC at 150.561 kb on + strand, within yadC at 150.562 kb on + strand, within yadC at 150.571 kb on + strand, within yadC at 150.590 kb on - strand, within yadC
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 147,820 - -2.3 147,820 - +0.2 147,901 - -0.1 147,954 - +0.2 147,984 - +0.6 147,984 - -1.4 147,999 - -4.9 148,026 + -2.2 148,042 - panC b0133 0.12 -4.2 148,042 - panC b0133 0.12 -3.5 148,063 + panC b0133 0.14 +0.0 148,063 + panC b0133 0.14 +0.1 148,202 + panC b0133 0.30 -2.0 148,205 + panC b0133 0.31 -4.6 148,205 + panC b0133 0.31 -2.9 148,215 - panC b0133 0.32 -0.9 148,215 - panC b0133 0.32 -0.1 148,236 + panC b0133 0.34 +0.3 148,259 - panC b0133 0.37 -0.6 148,376 - panC b0133 0.51 -1.0 148,376 - panC b0133 0.51 -0.3 148,385 - panC b0133 0.52 -1.4 148,463 + panC b0133 0.61 -3.6 148,484 - panC b0133 0.63 -2.7 148,488 + panC b0133 0.64 -3.3 148,547 + panC b0133 0.71 -0.6 148,570 - panC b0133 0.73 -1.3 148,570 - panC b0133 0.73 -3.3 148,573 - panC b0133 0.74 -3.0 148,624 - panC b0133 0.80 +0.1 148,624 - panC b0133 0.80 -0.7 148,643 + panC b0133 0.82 +0.1 148,787 + -0.5 148,787 + -2.0 149,073 + panB b0134 0.33 -1.0 149,079 + panB b0134 0.34 -2.0 149,112 + panB b0134 0.38 -1.3 149,197 + panB b0134 0.49 +0.1 149,197 + panB b0134 0.49 -0.9 149,282 - panB b0134 0.60 -0.8 149,295 + panB b0134 0.61 -1.1 149,297 + panB b0134 0.62 -1.1 149,391 - panB b0134 0.73 -2.3 149,416 - panB b0134 0.77 -1.5 149,438 - panB b0134 0.79 +0.1 149,438 - panB b0134 0.79 -1.5 149,475 + panB b0134 0.84 -0.8 149,518 + panB b0134 0.89 -0.4 149,524 + -0.4 149,524 - -0.5 149,524 - -1.2 149,532 - -4.4 149,597 + +0.4 149,653 + +0.3 149,662 + -1.1 149,667 + +0.9 149,667 + -0.1 149,677 + -0.3 149,677 + +1.0 149,680 - -0.8 149,693 + -2.9 149,693 + -0.8 149,693 - +0.3 149,693 - -0.9 149,694 + -0.4 149,696 + +1.0 149,701 + -0.6 149,701 - -0.3 149,704 + -0.1 149,718 + -2.0 149,718 + -0.9 149,718 + +0.9 149,718 - -0.1 149,737 + -0.5 149,737 + +1.7 149,737 + -3.7 149,755 - +0.4 149,756 + -0.5 149,762 + -0.4 149,775 + +0.5 149,775 + -0.2 149,778 - +0.1 149,786 + -3.6 149,802 + -1.5 149,810 - +0.8 149,812 + -0.4 149,812 + +0.5 149,812 + -0.5 149,812 + -2.6 149,816 + -1.0 149,816 + +1.1 149,818 + -0.4 149,834 + +1.2 149,834 + +0.5 149,837 - -0.8 149,839 + yadC b0135 0.10 -2.5 149,847 - yadC b0135 0.11 +0.1 149,847 - yadC b0135 0.11 +0.9 149,849 + yadC b0135 0.11 -0.5 149,859 - yadC b0135 0.12 -0.1 149,862 - yadC b0135 0.12 -0.4 149,879 - yadC b0135 0.13 +1.2 149,906 + yadC b0135 0.15 -0.3 149,906 + yadC b0135 0.15 -1.8 149,907 - yadC b0135 0.15 -4.0 149,907 - yadC b0135 0.15 +0.1 149,907 - yadC b0135 0.15 +0.5 149,943 + yadC b0135 0.18 -1.3 149,943 + yadC b0135 0.18 -0.2 149,946 + yadC b0135 0.19 -1.8 149,952 + yadC b0135 0.19 +0.8 149,952 + yadC b0135 0.19 +0.5 149,952 - yadC b0135 0.19 +0.2 149,957 + yadC b0135 0.20 +0.3 149,958 + yadC b0135 0.20 +0.7 149,960 - yadC b0135 0.20 +0.5 149,960 - yadC b0135 0.20 -0.1 149,960 - yadC b0135 0.20 -0.4 149,960 - yadC b0135 0.20 -2.2 149,962 - yadC b0135 0.20 +0.9 149,965 + yadC b0135 0.20 -0.5 149,969 + yadC b0135 0.21 -0.3 149,978 + yadC b0135 0.21 -1.5 149,990 + yadC b0135 0.22 -0.4 149,990 + yadC b0135 0.22 +1.2 149,990 + yadC b0135 0.22 -2.8 149,998 - yadC b0135 0.23 +2.4 150,012 + yadC b0135 0.24 -0.6 150,014 + yadC b0135 0.24 -0.5 150,014 + yadC b0135 0.24 -1.6 150,018 + yadC b0135 0.24 -3.2 150,018 + yadC b0135 0.24 +0.7 150,135 - yadC b0135 0.34 +0.2 150,156 + yadC b0135 0.36 -3.3 150,156 + yadC b0135 0.36 +1.4 150,156 + yadC b0135 0.36 -1.4 150,159 + yadC b0135 0.36 -0.3 150,164 + yadC b0135 0.36 +0.6 150,167 - yadC b0135 0.36 -0.4 150,170 + yadC b0135 0.37 -2.5 150,177 - yadC b0135 0.37 -1.5 150,179 + yadC b0135 0.37 +1.5 150,179 + yadC b0135 0.37 -0.1 150,179 + yadC b0135 0.37 +0.3 150,179 + yadC b0135 0.37 -2.1 150,179 + yadC b0135 0.37 -2.0 150,179 + yadC b0135 0.37 +0.2 150,179 + yadC b0135 0.37 +0.4 150,186 + yadC b0135 0.38 -0.2 150,187 - yadC b0135 0.38 +0.2 150,187 - yadC b0135 0.38 +2.5 150,226 + yadC b0135 0.41 +0.9 150,257 + yadC b0135 0.44 +0.5 150,259 + yadC b0135 0.44 +0.2 150,263 + yadC b0135 0.44 +1.6 150,269 + yadC b0135 0.45 +0.9 150,269 + yadC b0135 0.45 +2.5 150,269 + yadC b0135 0.45 -1.2 150,276 + yadC b0135 0.45 +0.8 150,276 + yadC b0135 0.45 -0.5 150,277 + yadC b0135 0.45 -1.1 150,277 + yadC b0135 0.45 -1.1 150,277 - yadC b0135 0.45 -2.1 150,277 - yadC b0135 0.45 +1.5 150,283 + yadC b0135 0.46 -1.3 150,326 - yadC b0135 0.49 +2.5 150,327 - yadC b0135 0.49 +2.5 150,376 + yadC b0135 0.53 +2.5 150,389 + yadC b0135 0.54 +2.5 150,389 + yadC b0135 0.54 +2.7 150,391 + yadC b0135 0.55 +2.5 150,391 + yadC b0135 0.55 +1.5 150,391 + yadC b0135 0.55 +2.5 150,393 + yadC b0135 0.55 +0.7 150,397 - yadC b0135 0.55 +2.5 150,420 + yadC b0135 0.57 +3.1 150,438 + yadC b0135 0.58 -1.1 150,446 + yadC b0135 0.59 -0.1 150,453 + yadC b0135 0.60 -3.1 150,459 + yadC b0135 0.60 +2.5 150,535 + yadC b0135 0.66 -2.0 150,539 + yadC b0135 0.67 -0.0 150,539 + yadC b0135 0.67 -0.7 150,561 + yadC b0135 0.68 +2.5 150,562 + yadC b0135 0.68 -0.1 150,571 + yadC b0135 0.69 +2.5 150,590 - yadC b0135 0.71 +0.2
Or see this region's nucleotide sequence