Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yneK and ydeA are separated by 149 nucleotides ydeA and marC are separated by 24 nucleotides marC and marR are separated by 211 nucleotides
b1527: yneK - hypothetical protein (NCBI), at 1,613,787 to 1,614,902
yneK
b1528: ydeA - sugar efflux transporter (NCBI), at 1,615,052 to 1,616,242
ydeA
b1529: marC - predicted transporter (NCBI), at 1,616,267 to 1,616,932
marC
b1530: marR - multiple antibiotic resistance protein; repressor of mar operon (VIMSS), at 1,617,144 to 1,617,578
marR
Position (kb)
1615
1616
1617 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1614.197 kb on - strand, within yneK at 1614.356 kb on - strand, within yneK at 1614.567 kb on - strand, within yneK at 1614.730 kb on - strand, within yneK at 1614.730 kb on - strand, within yneK at 1614.774 kb on - strand, within yneK at 1614.810 kb on + strand at 1615.094 kb on - strand at 1615.094 kb on - strand at 1615.131 kb on - strand at 1615.131 kb on - strand at 1615.269 kb on + strand, within ydeA at 1615.269 kb on + strand, within ydeA at 1615.438 kb on + strand, within ydeA at 1615.468 kb on + strand, within ydeA at 1615.468 kb on + strand, within ydeA at 1615.572 kb on + strand, within ydeA at 1615.634 kb on - strand, within ydeA at 1615.634 kb on - strand, within ydeA at 1615.704 kb on - strand, within ydeA at 1615.741 kb on - strand, within ydeA at 1615.741 kb on - strand, within ydeA at 1616.153 kb on - strand at 1616.277 kb on + strand at 1616.319 kb on + strand at 1616.319 kb on + strand at 1616.522 kb on + strand, within marC at 1616.899 kb on + strand at 1617.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,614,197 - yneK b1527 0.37 +2.1 1,614,356 - yneK b1527 0.51 +2.1 1,614,567 - yneK b1527 0.70 +2.1 1,614,730 - yneK b1527 0.84 -0.6 1,614,730 - yneK b1527 0.84 -1.2 1,614,774 - yneK b1527 0.88 +0.8 1,614,810 + -2.7 1,615,094 - +0.1 1,615,094 - -0.7 1,615,131 - -1.4 1,615,131 - -0.3 1,615,269 + ydeA b1528 0.18 -0.3 1,615,269 + ydeA b1528 0.18 +0.1 1,615,438 + ydeA b1528 0.32 +0.8 1,615,468 + ydeA b1528 0.35 +0.7 1,615,468 + ydeA b1528 0.35 +0.4 1,615,572 + ydeA b1528 0.44 +0.3 1,615,634 - ydeA b1528 0.49 +0.9 1,615,634 - ydeA b1528 0.49 +0.9 1,615,704 - ydeA b1528 0.55 +0.2 1,615,741 - ydeA b1528 0.58 +0.4 1,615,741 - ydeA b1528 0.58 +0.5 1,616,153 - -1.3 1,616,277 + -1.2 1,616,319 + +0.1 1,616,319 + -0.4 1,616,522 + marC b1529 0.38 -0.1 1,616,899 + +0.0 1,617,172 - +0.5
Or see this region's nucleotide sequence