Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycjW and ycjX are separated by 155 nucleotides ycjX and ycjF overlap by 4 nucleotides
b1320: ycjW - predicted DNA-binding transcriptional regulator (NCBI), at 1,380,987 to 1,381,985
ycjW
b1321: ycjX - conserved protein with nucleoside triphosphate hydrolase domain (NCBI), at 1,382,141 to 1,383,538
ycjX
b1322: ycjF - hypothetical protein (NCBI), at 1,383,535 to 1,384,596
ycjF
Position (kb)
1382
1383
1384 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1381.213 kb on - strand, within ycjW at 1381.228 kb on - strand, within ycjW at 1381.340 kb on - strand, within ycjW at 1381.383 kb on - strand, within ycjW at 1381.406 kb on - strand, within ycjW at 1381.406 kb on - strand, within ycjW at 1381.452 kb on - strand, within ycjW at 1381.464 kb on - strand, within ycjW at 1381.522 kb on - strand, within ycjW at 1381.529 kb on - strand, within ycjW at 1381.529 kb on - strand, within ycjW at 1381.590 kb on + strand, within ycjW at 1381.600 kb on - strand, within ycjW at 1381.610 kb on - strand, within ycjW at 1381.610 kb on - strand, within ycjW at 1381.612 kb on - strand, within ycjW at 1381.612 kb on - strand, within ycjW at 1381.693 kb on - strand, within ycjW at 1381.693 kb on - strand, within ycjW at 1381.727 kb on - strand, within ycjW at 1381.731 kb on - strand, within ycjW at 1381.747 kb on - strand at 1381.790 kb on - strand, within ycjW at 1381.790 kb on - strand, within ycjW at 1381.790 kb on - strand, within ycjW at 1381.793 kb on + strand, within ycjW at 1381.987 kb on + strand at 1382.128 kb on + strand at 1382.203 kb on - strand at 1382.203 kb on - strand at 1382.625 kb on - strand, within ycjX at 1382.756 kb on - strand, within ycjX at 1382.767 kb on - strand, within ycjX at 1382.860 kb on - strand, within ycjX at 1382.860 kb on - strand, within ycjX at 1383.086 kb on + strand, within ycjX at 1383.211 kb on - strand, within ycjX at 1383.269 kb on - strand, within ycjX at 1383.365 kb on - strand, within ycjX at 1383.365 kb on - strand, within ycjX at 1383.367 kb on - strand, within ycjX at 1383.572 kb on + strand at 1383.781 kb on + strand, within ycjF at 1383.801 kb on - strand, within ycjF at 1383.801 kb on - strand, within ycjF at 1383.828 kb on - strand, within ycjF at 1383.892 kb on + strand, within ycjF at 1383.892 kb on + strand, within ycjF at 1383.937 kb on - strand, within ycjF at 1384.032 kb on + strand, within ycjF at 1384.032 kb on + strand, within ycjF at 1384.214 kb on + strand, within ycjF at 1384.214 kb on + strand, within ycjF at 1384.420 kb on + strand, within ycjF at 1384.428 kb on - strand, within ycjF at 1384.428 kb on - strand, within ycjF at 1384.428 kb on - strand, within ycjF
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,381,213 - ycjW b1320 0.23 +2.1 1,381,228 - ycjW b1320 0.24 +0.7 1,381,340 - ycjW b1320 0.35 -2.1 1,381,383 - ycjW b1320 0.40 -1.7 1,381,406 - ycjW b1320 0.42 +2.7 1,381,406 - ycjW b1320 0.42 -0.3 1,381,452 - ycjW b1320 0.47 +0.8 1,381,464 - ycjW b1320 0.48 -0.3 1,381,522 - ycjW b1320 0.54 +1.0 1,381,529 - ycjW b1320 0.54 -0.7 1,381,529 - ycjW b1320 0.54 +0.5 1,381,590 + ycjW b1320 0.60 +2.1 1,381,600 - ycjW b1320 0.61 -0.9 1,381,610 - ycjW b1320 0.62 +0.4 1,381,610 - ycjW b1320 0.62 -0.7 1,381,612 - ycjW b1320 0.63 -0.5 1,381,612 - ycjW b1320 0.63 -1.3 1,381,693 - ycjW b1320 0.71 +0.6 1,381,693 - ycjW b1320 0.71 +0.1 1,381,727 - ycjW b1320 0.74 -0.1 1,381,731 - ycjW b1320 0.74 +0.6 1,381,747 - -0.5 1,381,790 - ycjW b1320 0.80 -0.2 1,381,790 - ycjW b1320 0.80 -0.8 1,381,790 - ycjW b1320 0.80 +0.8 1,381,793 + ycjW b1320 0.81 -1.3 1,381,987 + -0.0 1,382,128 + -0.3 1,382,203 - +1.7 1,382,203 - -0.1 1,382,625 - ycjX b1321 0.35 +0.0 1,382,756 - ycjX b1321 0.44 +0.4 1,382,767 - ycjX b1321 0.45 -0.1 1,382,860 - ycjX b1321 0.51 +2.0 1,382,860 - ycjX b1321 0.51 +0.6 1,383,086 + ycjX b1321 0.68 +0.4 1,383,211 - ycjX b1321 0.77 -1.3 1,383,269 - ycjX b1321 0.81 +0.7 1,383,365 - ycjX b1321 0.88 +0.7 1,383,365 - ycjX b1321 0.88 +0.7 1,383,367 - ycjX b1321 0.88 -0.1 1,383,572 + +0.9 1,383,781 + ycjF b1322 0.23 -1.6 1,383,801 - ycjF b1322 0.25 -0.1 1,383,801 - ycjF b1322 0.25 -0.7 1,383,828 - ycjF b1322 0.28 -2.6 1,383,892 + ycjF b1322 0.34 +1.5 1,383,892 + ycjF b1322 0.34 -0.0 1,383,937 - ycjF b1322 0.38 +0.4 1,384,032 + ycjF b1322 0.47 -2.3 1,384,032 + ycjF b1322 0.47 -1.2 1,384,214 + ycjF b1322 0.64 -0.5 1,384,214 + ycjF b1322 0.64 +1.0 1,384,420 + ycjF b1322 0.83 +0.6 1,384,428 - ycjF b1322 0.84 +0.4 1,384,428 - ycjF b1322 0.84 -1.0 1,384,428 - ycjF b1322 0.84 -0.2
Or see this region's nucleotide sequence