Strain Fitness in Escherichia coli BW25113 around b1321

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycjW and ycjX are separated by 155 nucleotidesycjX and ycjF overlap by 4 nucleotides b1320: ycjW - predicted DNA-binding transcriptional regulator (NCBI), at 1,380,987 to 1,381,985 ycjW b1321: ycjX - conserved protein with nucleoside triphosphate hydrolase domain (NCBI), at 1,382,141 to 1,383,538 ycjX b1322: ycjF - hypothetical protein (NCBI), at 1,383,535 to 1,384,596 ycjF Position (kb) 1382 1383 1384Strain fitness (log2 ratio) -2 -1 0 1 2at 1381.213 kb on - strand, within ycjWat 1381.228 kb on - strand, within ycjWat 1381.340 kb on - strand, within ycjWat 1381.383 kb on - strand, within ycjWat 1381.406 kb on - strand, within ycjWat 1381.406 kb on - strand, within ycjWat 1381.452 kb on - strand, within ycjWat 1381.464 kb on - strand, within ycjWat 1381.522 kb on - strand, within ycjWat 1381.529 kb on - strand, within ycjWat 1381.529 kb on - strand, within ycjWat 1381.590 kb on + strand, within ycjWat 1381.600 kb on - strand, within ycjWat 1381.610 kb on - strand, within ycjWat 1381.610 kb on - strand, within ycjWat 1381.612 kb on - strand, within ycjWat 1381.612 kb on - strand, within ycjWat 1381.693 kb on - strand, within ycjWat 1381.693 kb on - strand, within ycjWat 1381.727 kb on - strand, within ycjWat 1381.731 kb on - strand, within ycjWat 1381.747 kb on - strandat 1381.790 kb on - strand, within ycjWat 1381.790 kb on - strand, within ycjWat 1381.790 kb on - strand, within ycjWat 1381.793 kb on + strand, within ycjWat 1381.987 kb on + strandat 1382.128 kb on + strandat 1382.203 kb on - strandat 1382.203 kb on - strandat 1382.625 kb on - strand, within ycjXat 1382.756 kb on - strand, within ycjXat 1382.767 kb on - strand, within ycjXat 1382.860 kb on - strand, within ycjXat 1382.860 kb on - strand, within ycjXat 1383.086 kb on + strand, within ycjXat 1383.211 kb on - strand, within ycjXat 1383.269 kb on - strand, within ycjXat 1383.365 kb on - strand, within ycjXat 1383.365 kb on - strand, within ycjXat 1383.367 kb on - strand, within ycjXat 1383.572 kb on + strandat 1383.781 kb on + strand, within ycjFat 1383.801 kb on - strand, within ycjFat 1383.801 kb on - strand, within ycjFat 1383.828 kb on - strand, within ycjFat 1383.892 kb on + strand, within ycjFat 1383.892 kb on + strand, within ycjFat 1383.937 kb on - strand, within ycjFat 1384.032 kb on + strand, within ycjFat 1384.032 kb on + strand, within ycjFat 1384.214 kb on + strand, within ycjFat 1384.214 kb on + strand, within ycjFat 1384.420 kb on + strand, within ycjFat 1384.428 kb on - strand, within ycjFat 1384.428 kb on - strand, within ycjFat 1384.428 kb on - strand, within ycjF

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,381,213 - ycjW b1320 0.23 +2.1
1,381,228 - ycjW b1320 0.24 +0.7
1,381,340 - ycjW b1320 0.35 -2.1
1,381,383 - ycjW b1320 0.40 -1.7
1,381,406 - ycjW b1320 0.42 +2.7
1,381,406 - ycjW b1320 0.42 -0.3
1,381,452 - ycjW b1320 0.47 +0.8
1,381,464 - ycjW b1320 0.48 -0.3
1,381,522 - ycjW b1320 0.54 +1.0
1,381,529 - ycjW b1320 0.54 -0.7
1,381,529 - ycjW b1320 0.54 +0.5
1,381,590 + ycjW b1320 0.60 +2.1
1,381,600 - ycjW b1320 0.61 -0.9
1,381,610 - ycjW b1320 0.62 +0.4
1,381,610 - ycjW b1320 0.62 -0.7
1,381,612 - ycjW b1320 0.63 -0.5
1,381,612 - ycjW b1320 0.63 -1.3
1,381,693 - ycjW b1320 0.71 +0.6
1,381,693 - ycjW b1320 0.71 +0.1
1,381,727 - ycjW b1320 0.74 -0.1
1,381,731 - ycjW b1320 0.74 +0.6
1,381,747 - -0.5
1,381,790 - ycjW b1320 0.80 -0.2
1,381,790 - ycjW b1320 0.80 -0.8
1,381,790 - ycjW b1320 0.80 +0.8
1,381,793 + ycjW b1320 0.81 -1.3
1,381,987 + -0.0
1,382,128 + -0.3
1,382,203 - +1.7
1,382,203 - -0.1
1,382,625 - ycjX b1321 0.35 +0.0
1,382,756 - ycjX b1321 0.44 +0.4
1,382,767 - ycjX b1321 0.45 -0.1
1,382,860 - ycjX b1321 0.51 +2.0
1,382,860 - ycjX b1321 0.51 +0.6
1,383,086 + ycjX b1321 0.68 +0.4
1,383,211 - ycjX b1321 0.77 -1.3
1,383,269 - ycjX b1321 0.81 +0.7
1,383,365 - ycjX b1321 0.88 +0.7
1,383,365 - ycjX b1321 0.88 +0.7
1,383,367 - ycjX b1321 0.88 -0.1
1,383,572 + +0.9
1,383,781 + ycjF b1322 0.23 -1.6
1,383,801 - ycjF b1322 0.25 -0.1
1,383,801 - ycjF b1322 0.25 -0.7
1,383,828 - ycjF b1322 0.28 -2.6
1,383,892 + ycjF b1322 0.34 +1.5
1,383,892 + ycjF b1322 0.34 -0.0
1,383,937 - ycjF b1322 0.38 +0.4
1,384,032 + ycjF b1322 0.47 -2.3
1,384,032 + ycjF b1322 0.47 -1.2
1,384,214 + ycjF b1322 0.64 -0.5
1,384,214 + ycjF b1322 0.64 +1.0
1,384,420 + ycjF b1322 0.83 +0.6
1,384,428 - ycjF b1322 0.84 +0.4
1,384,428 - ycjF b1322 0.84 -1.0
1,384,428 - ycjF b1322 0.84 -0.2

Or see this region's nucleotide sequence