Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybiO and glnQ are separated by 260 nucleotides glnQ and glnP overlap by 4 nucleotides glnP and glnH are separated by 138 nucleotides
b0808: ybiO - putative transport protein (VIMSS), at 842,478 to 844,703
ybiO
b0809: glnQ - glutamine ABC transporter ATP-binding protein (NCBI), at 844,964 to 845,686
glnQ
b0810: glnP - glutamine ABC transporter permease protein (NCBI), at 845,683 to 846,342
glnP
b0811: glnH - glutamine ABC transporter periplasmic protein (NCBI), at 846,481 to 847,227
glnH
Position (kb) 844
845
846 Strain fitness (log2 ratio) -1
0
1 at 844.010 kb on + strand, within ybiO at 844.067 kb on - strand, within ybiO at 844.067 kb on - strand, within ybiO at 844.260 kb on + strand, within ybiO at 844.260 kb on + strand, within ybiO at 844.260 kb on + strand, within ybiO at 844.392 kb on - strand, within ybiO at 844.460 kb on - strand, within ybiO at 844.460 kb on - strand, within ybiO at 844.694 kb on - strand at 844.712 kb on - strand at 845.109 kb on + strand, within glnQ at 845.154 kb on + strand, within glnQ at 845.243 kb on + strand, within glnQ at 845.243 kb on + strand, within glnQ at 845.288 kb on + strand, within glnQ at 845.547 kb on - strand, within glnQ at 845.569 kb on + strand, within glnQ at 845.596 kb on - strand, within glnQ at 845.596 kb on - strand, within glnQ at 845.994 kb on + strand, within glnP at 845.994 kb on + strand, within glnP at 845.997 kb on - strand, within glnP at 845.998 kb on + strand, within glnP at 845.998 kb on + strand, within glnP at 846.069 kb on + strand, within glnP at 846.069 kb on + strand, within glnP at 846.069 kb on + strand, within glnP at 846.085 kb on + strand, within glnP at 846.154 kb on - strand, within glnP at 846.209 kb on - strand, within glnP at 846.326 kb on + strand at 846.326 kb on + strand at 846.420 kb on + strand at 846.420 kb on + strand at 846.434 kb on + strand at 846.434 kb on + strand at 846.502 kb on - strand at 846.583 kb on + strand, within glnH at 846.583 kb on + strand, within glnH at 846.604 kb on + strand, within glnH at 846.658 kb on - strand, within glnH
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 844,010 + ybiO b0808 0.69 +0.6 844,067 - ybiO b0808 0.71 +0.1 844,067 - ybiO b0808 0.71 -1.7 844,260 + ybiO b0808 0.80 -0.1 844,260 + ybiO b0808 0.80 +0.3 844,260 + ybiO b0808 0.80 -1.4 844,392 - ybiO b0808 0.86 -0.6 844,460 - ybiO b0808 0.89 -0.3 844,460 - ybiO b0808 0.89 +0.3 844,694 - -0.1 844,712 - +0.3 845,109 + glnQ b0809 0.20 +0.2 845,154 + glnQ b0809 0.26 +0.6 845,243 + glnQ b0809 0.39 +1.4 845,243 + glnQ b0809 0.39 +0.3 845,288 + glnQ b0809 0.45 +0.9 845,547 - glnQ b0809 0.81 -0.3 845,569 + glnQ b0809 0.84 +1.0 845,596 - glnQ b0809 0.87 +0.0 845,596 - glnQ b0809 0.87 +0.6 845,994 + glnP b0810 0.47 -0.2 845,994 + glnP b0810 0.47 +0.7 845,997 - glnP b0810 0.48 +0.1 845,998 + glnP b0810 0.48 +0.7 845,998 + glnP b0810 0.48 -0.0 846,069 + glnP b0810 0.58 -0.2 846,069 + glnP b0810 0.58 +0.3 846,069 + glnP b0810 0.58 +0.7 846,085 + glnP b0810 0.61 +0.3 846,154 - glnP b0810 0.71 -0.2 846,209 - glnP b0810 0.80 +0.2 846,326 + +0.2 846,326 + +0.1 846,420 + +0.4 846,420 + +0.6 846,434 + -0.7 846,434 + +1.0 846,502 - +0.0 846,583 + glnH b0811 0.14 +0.9 846,583 + glnH b0811 0.14 -0.3 846,604 + glnH b0811 0.16 -1.5 846,658 - glnH b0811 0.24 -0.4
Or see this region's nucleotide sequence