Strain Fitness in Pseudomonas sp. RS175 around PFR28_05239

Experiment: methyl ferulate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl ferulate (C)
5,997,340	+		PFR28_05238	0.58	-0.3
5,997,340	+		PFR28_05238	0.58	-1.2
5,997,341	-		PFR28_05238	0.58	+1.7
5,997,409	+		PFR28_05238	0.63	-1.7
5,997,409	+		PFR28_05238	0.63	+0.4
5,997,409	+		PFR28_05238	0.63	+1.2
5,997,409	+		PFR28_05238	0.63	+1.1
5,997,409	+		PFR28_05238	0.63	+0.2
5,997,409	+		PFR28_05238	0.63	+0.1
5,997,409	+		PFR28_05238	0.63	+0.1
5,997,409	+		PFR28_05238	0.63	+1.7
5,997,409	+		PFR28_05238	0.63	+0.6
5,997,409	+		PFR28_05238	0.63	-0.4
5,997,410	-		PFR28_05238	0.63	-0.4
5,997,410	-		PFR28_05238	0.63	+1.0
5,997,410	-		PFR28_05238	0.63	+0.7
5,997,410	-		PFR28_05238	0.63	-0.9
5,997,410	-		PFR28_05238	0.63	+0.7
5,997,410	-		PFR28_05238	0.63	-0.4
5,997,410	-		PFR28_05238	0.63	+0.3
5,997,410	-		PFR28_05238	0.63	-1.3
5,997,410	-		PFR28_05238	0.63	+1.1
5,997,410	-		PFR28_05238	0.63	+0.4
5,997,410	-		PFR28_05238	0.63	-0.0
5,997,410	-		PFR28_05238	0.63	+0.0
5,997,632	-		PFR28_05238	0.80	-0.4
5,997,632	-		PFR28_05238	0.80	-0.3
5,997,632	-		PFR28_05238	0.80	-0.4
5,997,632	-		PFR28_05238	0.80	+0.1
5,997,890	+				-2.3
5,997,890	+				+0.9
5,997,891	-				+0.4
5,997,891	-				-0.5
5,997,892	+				+1.2
5,997,892	+				-1.5
5,997,892	+				-1.3
5,997,892	-				+1.1
5,997,893	-				-1.9
5,997,893	-				-0.6
5,997,893	-				+1.3
5,997,893	-				+0.4
5,997,893	-				-1.7
5,997,893	-				-0.4
5,997,976	+				-1.7
5,997,976	+				+1.0
5,997,976	+				-1.9
5,997,977	-				-0.7
5,997,977	-				-0.3
5,997,983	+				-0.1
5,997,983	+				+0.5
5,997,984	-				-0.1
5,997,984	-				+1.0
5,997,984	-				-1.8
5,998,066	+				+1.5
5,998,066	+				-0.5
5,998,067	-				-1.6
5,998,067	-				+0.5
5,998,067	-				+0.1
5,998,067	-				+1.5
5,998,067	-				+0.2
5,998,068	+				-1.1
5,998,069	-				-1.5
5,998,069	-				+0.3
5,998,069	-				-1.5
5,998,075	+				+0.2
5,998,111	+				-2.8
5,998,128	+				+0.0
5,998,129	-				+0.3
5,998,148	+				+0.5
5,998,148	+				+1.0
5,998,148	+				+1.6
5,998,148	+				-0.4
5,998,148	+				+1.8
5,998,149	-				-1.3
5,998,149	-				+0.6
5,998,149	-				-0.1
5,998,149	-				-2.2
5,998,149	-				-1.7
5,998,149	-				-0.5
5,998,149	-				+0.2
5,998,149	-				+1.4
5,998,149	-				-2.2
5,998,149	-				-1.8
5,998,234	-				-0.1
5,998,293	+		PFR28_05239	0.10	-0.1
5,998,293	+		PFR28_05239	0.10	-0.6
5,998,294	-		PFR28_05239	0.10	+1.0
5,998,294	-		PFR28_05239	0.10	+0.9
5,998,294	-		PFR28_05239	0.10	+0.7
5,998,295	+		PFR28_05239	0.10	-0.3
5,998,295	+		PFR28_05239	0.10	+0.9
5,998,296	-		PFR28_05239	0.10	-0.7
5,998,296	-		PFR28_05239	0.10	+1.3
5,998,296	-		PFR28_05239	0.10	-2.7
5,998,416	+		PFR28_05239	0.20	+0.7
5,998,416	+		PFR28_05239	0.20	-1.1
5,998,417	-		PFR28_05239	0.20	-0.4
5,998,417	-		PFR28_05239	0.20	+0.1
5,998,417	-		PFR28_05239	0.20	-0.7
5,998,417	-		PFR28_05239	0.20	+0.0
5,999,022	+		PFR28_05239	0.67	+0.2
5,999,022	+		PFR28_05239	0.67	+1.1
5,999,023	-		PFR28_05239	0.67	+0.6
5,999,094	+		PFR28_05239	0.73	-0.4
5,999,095	-		PFR28_05239	0.73	+1.5
5,999,149	-		PFR28_05239	0.77	+0.8
5,999,152	-		PFR28_05239	0.77	-0.1
5,999,152	-		PFR28_05239	0.77	-1.0
5,999,152	-		PFR28_05239	0.77	+0.1
5,999,185	+		PFR28_05239	0.80	-0.7
5,999,185	+		PFR28_05239	0.80	-2.1
5,999,185	+		PFR28_05239	0.80	+0.7
5,999,185	+		PFR28_05239	0.80	+0.1
5,999,186	-		PFR28_05239	0.80	-2.6
5,999,186	-		PFR28_05239	0.80	+0.9
5,999,217	+		PFR28_05239	0.82	+0.5
5,999,217	+		PFR28_05239	0.82	+0.3
5,999,218	-		PFR28_05239	0.82	+0.8
5,999,489	+				+0.9
5,999,490	-				-0.4
5,999,490	-				-0.6
5,999,534	+		PFR28_05240	0.10	-0.2
5,999,534	+		PFR28_05240	0.10	-0.4
5,999,534	+		PFR28_05240	0.10	+0.6
5,999,534	+		PFR28_05240	0.10	+0.7
5,999,535	-		PFR28_05240	0.10	-0.6
5,999,535	-		PFR28_05240	0.10	-0.3
5,999,535	-		PFR28_05240	0.10	+0.8
5,999,535	-		PFR28_05240	0.10	+0.8
5,999,535	-		PFR28_05240	0.10	+0.9
5,999,535	-		PFR28_05240	0.10	-0.9
5,999,535	-		PFR28_05240	0.10	-0.3
5,999,734	+		PFR28_05240	0.30	+0.1
5,999,807	+		PFR28_05240	0.37	+0.1
5,999,807	+		PFR28_05240	0.37	-1.1
5,999,807	+		PFR28_05240	0.37	+1.3
5,999,807	+		PFR28_05240	0.37	-1.4
5,999,807	+		PFR28_05240	0.37	+0.1
5,999,808	-		PFR28_05240	0.37	+0.9
5,999,808	-		PFR28_05240	0.37	+0.4
5,999,808	-		PFR28_05240	0.37	+0.4
5,999,850	-		PFR28_05240	0.41	-1.5
5,999,858	+		PFR28_05240	0.42	-0.1
6,000,007	-		PFR28_05240	0.56	-1.1
6,000,125	+		PFR28_05240	0.68	-1.3
6,000,125	+		PFR28_05240	0.68	+0.2
6,000,125	+		PFR28_05240	0.68	-0.2
6,000,125	+		PFR28_05240	0.68	+0.7
6,000,125	+		PFR28_05240	0.68	+1.1
6,000,125	+		PFR28_05240	0.68	+1.4
6,000,125	+		PFR28_05240	0.68	+0.1
6,000,126	-		PFR28_05240	0.68	+2.8
6,000,126	-		PFR28_05240	0.68	+0.0
6,000,126	-		PFR28_05240	0.68	-0.2
6,000,126	-		PFR28_05240	0.68	-0.4
6,000,126	-		PFR28_05240	0.68	+0.6
6,000,126	-		PFR28_05240	0.68	-0.7
6,000,126	-		PFR28_05240	0.68	+3.0
6,000,126	-		PFR28_05240	0.68	-0.6
6,000,127	+		PFR28_05240	0.68	+2.1
6,000,127	+		PFR28_05240	0.68	-0.7
6,000,127	+		PFR28_05240	0.68	-2.6
6,000,127	+		PFR28_05240	0.68	-3.1
6,000,127	+		PFR28_05240	0.68	+1.2
6,000,127	+		PFR28_05240	0.68	+0.7
6,000,127	+		PFR28_05240	0.68	-1.8
6,000,127	+		PFR28_05240	0.68	+1.0
6,000,127	+		PFR28_05240	0.68	+0.6
6,000,128	-		PFR28_05240	0.68	-1.5
6,000,128	-		PFR28_05240	0.68	-2.2
6,000,128	-		PFR28_05240	0.68	+0.5
6,000,128	-		PFR28_05240	0.68	-0.2
6,000,128	-		PFR28_05240	0.68	-0.2
6,000,203	-		PFR28_05240	0.75	+0.9
6,000,305	-		PFR28_05240	0.85	-0.5
6,000,318	+		PFR28_05240	0.86	-0.6
6,000,378	-				-0.5