Strain Fitness in Pseudomonas sp. RS175 around PFR28_04317

Experiment: methyl ferulate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl ferulate (C)
4,923,629	-		PFR28_04316	0.40	-1.0
4,923,629	-		PFR28_04316	0.40	-1.6
4,923,629	-		PFR28_04316	0.40	-2.2
4,923,629	-		PFR28_04316	0.40	-2.1
4,923,629	-		PFR28_04316	0.40	-1.6
4,923,629	-		PFR28_04316	0.40	+0.8
4,923,629	-		PFR28_04316	0.40	-0.7
4,923,719	+		PFR28_04316	0.48	-1.3
4,923,719	+		PFR28_04316	0.48	-2.3
4,923,719	+		PFR28_04316	0.48	-0.7
4,923,719	+		PFR28_04316	0.48	-0.7
4,923,855	+		PFR28_04316	0.61	+0.4
4,923,855	+		PFR28_04316	0.61	-0.5
4,923,855	+		PFR28_04316	0.61	+0.3
4,923,856	-		PFR28_04316	0.61	-0.5
4,923,856	-		PFR28_04316	0.61	-0.6
4,923,856	-		PFR28_04316	0.61	-2.9
4,923,890	+		PFR28_04316	0.64	-1.5
4,923,959	+		PFR28_04316	0.70	-0.9
4,923,960	-		PFR28_04316	0.70	-3.9
4,923,978	-		PFR28_04316	0.72	+0.3
4,923,978	-		PFR28_04316	0.72	-1.3
4,923,978	-		PFR28_04316	0.72	+0.0
4,924,028	+		PFR28_04316	0.77	+0.9
4,924,029	-		PFR28_04316	0.77	-0.9
4,924,029	-		PFR28_04316	0.77	-2.5
4,924,029	-		PFR28_04316	0.77	-0.2
4,924,135	+		PFR28_04316	0.86	-0.3
4,924,135	+		PFR28_04316	0.86	-0.2
4,924,194	-				-3.2
4,924,206	+				-0.0
4,924,259	+				-1.8
4,924,259	+				-2.8
4,924,259	+				-0.1
4,924,259	+				-1.8
4,924,259	+				-0.3
4,924,260	-				+0.1
4,924,260	-				-1.3
4,924,260	-				-0.5
4,924,260	-				-1.2
4,924,260	-				-2.9
4,924,260	-				+2.1
4,924,269	+				+0.2
4,924,269	+				-1.5
4,924,269	+				-0.5
4,924,270	-				-1.0
4,924,346	+				+0.2
4,924,347	-				-0.9
4,924,347	-				-0.3
4,924,347	-				+0.3
4,924,347	-				-0.1
4,924,408	+				-2.4
4,924,422	+				-0.4
4,924,422	+				+0.8
4,924,422	+				+0.2
4,924,422	+				-0.7
4,924,423	-				+0.1
4,924,423	-				-1.2
4,924,423	-				+1.2
4,924,423	-				-1.0
4,924,471	-				-0.5
4,924,533	-				+1.2
4,924,533	-				-0.5
4,924,533	-				-0.5
4,924,533	-				+0.7
4,924,533	-				+0.9
4,924,533	-				+0.8
4,924,533	-				-0.6
4,924,593	+				-2.3
4,924,593	+				-0.5
4,924,593	+				+0.3
4,924,593	+				+1.3
4,924,594	-				-2.5
4,924,594	-				-0.0
4,924,594	-				+0.4
4,924,594	-				-0.5
4,924,634	+				+0.0
4,924,634	+				+0.8
4,924,635	-				-2.5
4,924,635	-				-0.2
4,924,635	-				-0.9
4,924,851	+		PFR28_04317	0.15	+0.4
4,924,851	+		PFR28_04317	0.15	-0.5
4,924,851	+		PFR28_04317	0.15	+0.5
4,924,851	+		PFR28_04317	0.15	-0.8
4,924,851	+		PFR28_04317	0.15	+1.7
4,924,852	-		PFR28_04317	0.15	-0.1
4,924,852	-		PFR28_04317	0.15	-0.9
4,924,951	-		PFR28_04317	0.21	-0.5
4,924,951	-		PFR28_04317	0.21	-0.5
4,924,977	+		PFR28_04317	0.22	+0.8
4,924,978	-		PFR28_04317	0.23	+0.1
4,924,978	-		PFR28_04317	0.23	-0.4
4,925,051	+		PFR28_04317	0.27	-1.0
4,925,052	-		PFR28_04317	0.27	-2.0
4,925,073	+		PFR28_04317	0.28	+0.5
4,925,073	+		PFR28_04317	0.28	+0.9
4,925,074	-		PFR28_04317	0.28	-1.1
4,925,074	-		PFR28_04317	0.28	-0.2
4,925,105	+		PFR28_04317	0.30	+1.4
4,925,124	+		PFR28_04317	0.32	+1.2
4,925,125	-		PFR28_04317	0.32	-0.8
4,925,125	-		PFR28_04317	0.32	-0.9
4,925,162	-		PFR28_04317	0.34	+0.5
4,925,241	+		PFR28_04317	0.39	+1.5
4,925,241	+		PFR28_04317	0.39	+0.9
4,925,241	+		PFR28_04317	0.39	+0.6
4,925,241	+		PFR28_04317	0.39	-0.5
4,925,242	-		PFR28_04317	0.39	-1.6
4,925,242	-		PFR28_04317	0.39	-1.6
4,925,242	-		PFR28_04317	0.39	-0.3
4,925,269	-		PFR28_04317	0.41	+0.4
4,925,269	-		PFR28_04317	0.41	+1.8
4,925,404	-		PFR28_04317	0.49	-0.4
4,925,553	+		PFR28_04317	0.58	+1.9
4,925,553	+		PFR28_04317	0.58	-4.4
4,925,553	+		PFR28_04317	0.58	-0.1
4,925,553	+		PFR28_04317	0.58	-3.3
4,925,553	+		PFR28_04317	0.58	-2.6
4,925,553	+		PFR28_04317	0.58	-1.3
4,925,553	+		PFR28_04317	0.58	-3.2
4,925,554	-		PFR28_04317	0.58	+0.2
4,925,554	-		PFR28_04317	0.58	-0.7
4,925,554	-		PFR28_04317	0.58	-0.5
4,925,554	-		PFR28_04317	0.58	+0.5
4,925,554	-		PFR28_04317	0.58	-1.8
4,925,769	+		PFR28_04317	0.72	+0.0
4,925,769	+		PFR28_04317	0.72	-0.5
4,925,769	+		PFR28_04317	0.72	-0.0
4,925,769	+		PFR28_04317	0.72	-3.4
4,925,770	-		PFR28_04317	0.72	-0.9
4,925,770	-		PFR28_04317	0.72	+0.0
4,925,770	-		PFR28_04317	0.72	+0.1
4,925,770	-		PFR28_04317	0.72	-1.8
4,925,770	-		PFR28_04317	0.72	-0.6
4,925,770	-		PFR28_04317	0.72	-2.0
4,925,775	+		PFR28_04317	0.72	-0.0
4,925,775	+		PFR28_04317	0.72	-0.7
4,925,775	+		PFR28_04317	0.72	+0.4
4,925,775	+		PFR28_04317	0.72	-0.8
4,925,775	+		PFR28_04317	0.72	-0.5
4,925,775	+		PFR28_04317	0.72	-1.2
4,925,775	+		PFR28_04317	0.72	-1.3
4,925,775	+		PFR28_04317	0.72	-0.5
4,925,776	-		PFR28_04317	0.72	-0.7
4,925,776	-		PFR28_04317	0.72	-0.0
4,925,776	-		PFR28_04317	0.72	-3.1
4,925,776	-		PFR28_04317	0.72	-1.3
4,925,776	-		PFR28_04317	0.72	-1.0
4,925,776	-		PFR28_04317	0.72	+0.1
4,925,776	-		PFR28_04317	0.72	+1.0
4,925,776	-		PFR28_04317	0.72	+1.4
4,925,776	-		PFR28_04317	0.72	-1.5
4,925,776	-		PFR28_04317	0.72	+1.2
4,925,781	+		PFR28_04317	0.72	-0.6
4,925,781	+		PFR28_04317	0.72	-2.2
4,925,781	+		PFR28_04317	0.72	+1.2
4,925,781	+		PFR28_04317	0.72	-0.9
4,925,781	+		PFR28_04317	0.72	-2.2
4,925,782	-		PFR28_04317	0.73	-0.0
4,925,782	-		PFR28_04317	0.73	-0.8
4,925,782	-		PFR28_04317	0.73	+0.9
4,925,782	-		PFR28_04317	0.73	-2.3
4,925,782	-		PFR28_04317	0.73	+0.6
4,925,782	-		PFR28_04317	0.73	-1.1
4,925,782	-		PFR28_04317	0.73	-0.8
4,925,782	-		PFR28_04317	0.73	+0.9
4,925,782	-		PFR28_04317	0.73	+0.4
4,925,782	-		PFR28_04317	0.73	+1.5
4,925,782	-		PFR28_04317	0.73	-1.3
4,925,925	+		PFR28_04317	0.81	-0.1
4,925,925	+		PFR28_04317	0.81	+1.0
4,925,925	+		PFR28_04317	0.81	+1.7
4,925,925	+		PFR28_04317	0.81	+2.0
4,925,925	+		PFR28_04317	0.81	-0.3
4,925,925	+		PFR28_04317	0.81	+0.3
4,925,925	+		PFR28_04317	0.81	+1.5
4,925,925	+		PFR28_04317	0.81	+0.2
4,925,926	-		PFR28_04317	0.81	-0.4
4,925,926	-		PFR28_04317	0.81	-0.3
4,925,926	-		PFR28_04317	0.81	+0.1
4,925,926	-		PFR28_04317	0.81	+0.2
4,925,926	-		PFR28_04317	0.81	-0.3
4,925,926	-		PFR28_04317	0.81	-0.9
4,925,926	-		PFR28_04317	0.81	+0.6
4,925,926	-		PFR28_04317	0.81	-0.0
4,926,271	+				+0.5
4,926,271	+				-1.8
4,926,271	+				+1.3
4,926,271	+				-0.5
4,926,271	+				+0.7
4,926,271	+				-0.1
4,926,271	+				+0.5
4,926,271	+				+0.4
4,926,271	+				-0.7
4,926,271	+				+2.9
4,926,271	+				-0.2
4,926,271	+				+1.2
4,926,271	+				+0.0
4,926,271	+				+0.8
4,926,272	-				+0.1
4,926,272	-				+1.2
4,926,272	-				+0.2
4,926,272	-				-0.5
4,926,272	-				-0.8
4,926,272	-				-1.7
4,926,272	-				+2.1
4,926,272	-				-0.7
4,926,272	-				+0.6
4,926,272	-				-0.6
4,926,272	-				-0.0
4,926,272	-				+0.8
4,926,272	-				+0.7
4,926,276	+				+1.1
4,926,277	-				+0.6
4,926,277	-				+1.8
4,926,277	-				+0.1
4,926,277	-				+1.5
4,926,667	+		PFR28_04318	0.23	-0.7
4,926,667	+		PFR28_04318	0.23	+1.2
4,926,667	+		PFR28_04318	0.23	+0.4
4,926,667	+		PFR28_04318	0.23	-2.0
4,926,667	+		PFR28_04318	0.23	+1.3
4,926,667	+		PFR28_04318	0.23	-0.3
4,926,667	+		PFR28_04318	0.23	+0.4
4,926,667	+		PFR28_04318	0.23	+0.5
4,926,667	+		PFR28_04318	0.23	-1.2
4,926,668	-		PFR28_04318	0.23	-0.4
4,926,668	-		PFR28_04318	0.23	+0.5
4,926,778	+		PFR28_04318	0.34	-0.6
4,926,778	+		PFR28_04318	0.34	+2.7
4,926,778	+		PFR28_04318	0.34	+1.4
4,926,778	+		PFR28_04318	0.34	-0.5
4,926,778	+		PFR28_04318	0.34	-0.6
4,926,778	+		PFR28_04318	0.34	-1.2
4,926,778	+		PFR28_04318	0.34	+0.9
4,926,779	-		PFR28_04318	0.34	-0.0
4,926,779	-		PFR28_04318	0.34	-1.4
4,926,779	-		PFR28_04318	0.34	-1.2
4,926,779	-		PFR28_04318	0.34	+1.4
4,926,779	-		PFR28_04318	0.34	-0.7
4,926,779	-		PFR28_04318	0.34	+0.9
4,926,779	-		PFR28_04318	0.34	+0.9
4,926,781	+		PFR28_04318	0.34	-1.2
4,926,781	+		PFR28_04318	0.34	-1.2
4,926,781	+		PFR28_04318	0.34	+0.2
4,926,781	+		PFR28_04318	0.34	-1.5
4,926,781	+		PFR28_04318	0.34	-0.7
4,926,781	+		PFR28_04318	0.34	-0.6
4,926,781	+		PFR28_04318	0.34	-0.2
4,926,781	+		PFR28_04318	0.34	+0.4
4,926,781	+		PFR28_04318	0.34	-1.5
4,926,781	+		PFR28_04318	0.34	-1.4
4,926,781	+		PFR28_04318	0.34	-0.4
4,926,781	+		PFR28_04318	0.34	-0.2
4,926,781	+		PFR28_04318	0.34	-0.8
4,926,782	-		PFR28_04318	0.34	-0.5
4,926,782	-		PFR28_04318	0.34	+0.5
4,926,782	-		PFR28_04318	0.34	-0.8
4,926,782	-		PFR28_04318	0.34	-0.2
4,926,782	-		PFR28_04318	0.34	-0.6
4,926,782	-		PFR28_04318	0.34	+1.1
4,926,840	-		PFR28_04318	0.40	-0.8
4,926,949	+		PFR28_04318	0.51	+0.4
4,926,950	-		PFR28_04318	0.51	-0.3
4,926,950	-		PFR28_04318	0.51	+1.5
4,926,950	-		PFR28_04318	0.51	-3.0
4,927,012	+		PFR28_04318	0.57	+0.3
4,927,012	+		PFR28_04318	0.57	-0.9
4,927,012	+		PFR28_04318	0.57	+1.1
4,927,012	+		PFR28_04318	0.57	+1.0
4,927,012	+		PFR28_04318	0.57	+0.4
4,927,012	+		PFR28_04318	0.57	+0.2
4,927,012	+		PFR28_04318	0.57	+0.1
4,927,012	+		PFR28_04318	0.57	-0.2
4,927,012	+		PFR28_04318	0.57	-0.4
4,927,012	+		PFR28_04318	0.57	+0.0
4,927,012	+		PFR28_04318	0.57	+0.1
4,927,012	+		PFR28_04318	0.57	+0.2
4,927,012	+		PFR28_04318	0.57	+1.1
4,927,013	-		PFR28_04318	0.57	+0.3
4,927,013	-		PFR28_04318	0.57	-0.1
4,927,013	-		PFR28_04318	0.57	-0.0
4,927,013	-		PFR28_04318	0.57	+2.3
4,927,013	-		PFR28_04318	0.57	-0.3
4,927,013	-		PFR28_04318	0.57	-1.8
4,927,013	-		PFR28_04318	0.57	-1.7
4,927,013	-		PFR28_04318	0.57	-0.5
4,927,013	-		PFR28_04318	0.57	-1.4
4,927,013	-		PFR28_04318	0.57	-0.3
4,927,013	-		PFR28_04318	0.57	+0.5
4,927,013	-		PFR28_04318	0.57	+0.4
4,927,013	-		PFR28_04318	0.57	+0.6
4,927,013	-		PFR28_04318	0.57	-0.9
4,927,013	-		PFR28_04318	0.57	+0.9
4,927,013	-		PFR28_04318	0.57	+0.3
4,927,013	-		PFR28_04318	0.57	+0.7
4,927,016	+		PFR28_04318	0.58	-0.0
4,927,016	+		PFR28_04318	0.58	-0.1
4,927,016	+		PFR28_04318	0.58	+1.4
4,927,017	-		PFR28_04318	0.58	-0.3
4,927,017	-		PFR28_04318	0.58	+0.3
4,927,017	-		PFR28_04318	0.58	+0.2
4,927,017	-		PFR28_04318	0.58	-3.0
4,927,017	-		PFR28_04318	0.58	-2.5