Strain Fitness in Pseudomonas sp. RS175 around PFR28_02005

Experiment: methyl ferulate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl ferulate (C)
2,277,379	-				+0.4
2,277,379	-				+0.3
2,277,419	-		PFR28_02004	0.15	+1.8
2,277,479	+		PFR28_02004	0.24	-2.2
2,277,480	-		PFR28_02004	0.24	-0.5
2,277,480	-		PFR28_02004	0.24	+0.5
2,277,480	-		PFR28_02004	0.24	-0.1
2,277,480	-		PFR28_02004	0.24	-2.5
2,277,549	+		PFR28_02004	0.35	+1.9
2,277,550	-		PFR28_02004	0.35	-1.5
2,277,551	+		PFR28_02004	0.35	-0.7
2,277,551	+		PFR28_02004	0.35	+1.3
2,277,551	+		PFR28_02004	0.35	+0.0
2,277,552	-		PFR28_02004	0.35	+2.8
2,277,552	-		PFR28_02004	0.35	+0.3
2,277,552	-		PFR28_02004	0.35	-0.7
2,277,592	+		PFR28_02004	0.42	+0.6
2,277,618	+		PFR28_02004	0.46	-0.4
2,277,618	+		PFR28_02004	0.46	-0.2
2,277,619	-		PFR28_02004	0.46	+0.5
2,277,619	-		PFR28_02004	0.46	-1.0
2,277,668	+		PFR28_02004	0.53	-0.8
2,277,671	+		PFR28_02004	0.54	+0.4
2,277,686	+		PFR28_02004	0.56	+0.3
2,277,687	-		PFR28_02004	0.56	+0.9
2,277,763	+		PFR28_02004	0.68	-0.2
2,277,764	-		PFR28_02004	0.68	+0.1
2,277,764	-		PFR28_02004	0.68	+4.1
2,277,765	+		PFR28_02004	0.68	-1.3
2,277,765	+		PFR28_02004	0.68	+0.2
2,277,766	-		PFR28_02004	0.69	+0.5
2,277,778	+		PFR28_02004	0.70	-2.0
2,277,778	+		PFR28_02004	0.70	-0.2
2,277,779	-		PFR28_02004	0.71	-0.6
2,277,779	-		PFR28_02004	0.71	-2.0
2,277,815	+		PFR28_02004	0.76	-0.5
2,277,849	-		PFR28_02004	0.81	-1.8
2,277,886	+		PFR28_02004	0.87	+0.3
2,277,953	-				+0.7
2,277,953	-				+0.3
2,277,956	+				-0.2
2,277,956	+				-0.9
2,277,957	-				+1.3
2,277,957	-				-0.8
2,277,957	-				-1.4
2,277,957	-				+1.2
2,277,957	-				+0.2
2,277,957	-				-3.1
2,277,988	+				+0.3
2,278,022	+				+0.1
2,278,169	+				+0.3
2,278,169	+				-0.7
2,278,169	+				-2.4
2,278,177	+				+0.6
2,278,223	-				+0.9
2,278,241	+				-3.0
2,278,263	+				-0.2
2,278,264	-				-0.3
2,278,266	+				+1.2
2,278,283	-				-0.2
2,278,483	+		PFR28_02005	0.24	-3.9
2,278,484	-		PFR28_02005	0.24	-0.6
2,278,484	-		PFR28_02005	0.24	+1.3
2,278,556	+		PFR28_02005	0.35	-1.7
2,278,556	+		PFR28_02005	0.35	+1.0
2,278,557	-		PFR28_02005	0.35	-0.1
2,278,557	-		PFR28_02005	0.35	+1.6
2,278,557	-		PFR28_02005	0.35	+0.5
2,278,557	-		PFR28_02005	0.35	-0.3
2,278,557	-		PFR28_02005	0.35	+3.9
2,278,557	-		PFR28_02005	0.35	-1.7
2,278,598	-		PFR28_02005	0.41	-2.1
2,278,598	-		PFR28_02005	0.41	+2.3
2,278,607	+		PFR28_02005	0.42	-2.0
2,278,610	+		PFR28_02005	0.43	+0.5
2,278,610	+		PFR28_02005	0.43	-1.5
2,278,610	+		PFR28_02005	0.43	-2.2
2,278,610	+		PFR28_02005	0.43	-0.2
2,278,611	-		PFR28_02005	0.43	+0.9
2,278,611	-		PFR28_02005	0.43	-0.7
2,278,611	-		PFR28_02005	0.43	+0.2
2,278,831	+		PFR28_02005	0.76	-0.4
2,278,831	+		PFR28_02005	0.76	-0.2
2,278,832	-		PFR28_02005	0.76	-1.7
2,278,849	-		PFR28_02005	0.78	-1.1
2,278,903	+		PFR28_02005	0.86	-0.2
2,278,903	+		PFR28_02005	0.86	-2.1
2,278,903	+		PFR28_02005	0.86	-1.8
2,278,903	+		PFR28_02005	0.86	+0.2
2,278,903	+		PFR28_02005	0.86	-0.4
2,278,904	-		PFR28_02005	0.87	-1.2
2,278,904	-		PFR28_02005	0.87	-1.3
2,278,904	-		PFR28_02005	0.87	-0.7
2,278,904	-		PFR28_02005	0.87	+0.7
2,278,923	+		PFR28_02005	0.89	-0.7
2,279,137	+		PFR28_02006	0.11	-2.8
2,279,181	+		PFR28_02006	0.18	-0.2
2,279,181	+		PFR28_02006	0.18	-1.5
2,279,182	-		PFR28_02006	0.18	-1.2
2,279,182	-		PFR28_02006	0.18	-1.0
2,279,338	+		PFR28_02006	0.43	-1.3
2,279,338	+		PFR28_02006	0.43	-0.4
2,279,338	+		PFR28_02006	0.43	+1.9
2,279,338	+		PFR28_02006	0.43	-0.4
2,279,338	+		PFR28_02006	0.43	+1.1
2,279,339	-		PFR28_02006	0.43	+2.0
2,279,383	+		PFR28_02006	0.50	+0.3
2,279,434	-		PFR28_02006	0.58	+0.4
2,279,444	-		PFR28_02006	0.60	+0.9
2,279,444	-		PFR28_02006	0.60	+0.8
2,279,444	-		PFR28_02006	0.60	-0.2
2,279,444	-		PFR28_02006	0.60	+0.3
2,279,444	-		PFR28_02006	0.60	-0.4
2,279,444	-		PFR28_02006	0.60	+0.8
2,279,444	-		PFR28_02006	0.60	-0.8
2,279,446	+		PFR28_02006	0.60	+0.9
2,279,446	+		PFR28_02006	0.60	-1.1
2,279,446	+		PFR28_02006	0.60	-2.4
2,279,447	-		PFR28_02006	0.60	-2.8
2,279,447	-		PFR28_02006	0.60	-1.0
2,279,533	+		PFR28_02006	0.74	-0.2
2,279,533	+		PFR28_02006	0.74	-0.1
2,279,534	-		PFR28_02006	0.74	+0.2
2,279,548	+		PFR28_02006	0.77	-3.2
2,279,548	+		PFR28_02006	0.77	+1.3
2,279,548	+		PFR28_02006	0.77	+0.2
2,279,548	+		PFR28_02006	0.77	+1.0
2,279,548	+		PFR28_02006	0.77	-1.2
2,279,549	-		PFR28_02006	0.77	+1.2
2,279,549	-		PFR28_02006	0.77	-3.0
2,279,549	-		PFR28_02006	0.77	+0.3
2,279,566	+		PFR28_02006	0.79	-0.5
2,279,566	+		PFR28_02006	0.79	-0.0
2,279,638	+				+0.2
2,279,639	-				+1.3
2,279,655	+				+0.7
2,279,656	-				-0.5
2,279,709	+				-2.1
2,279,710	-				+0.6
2,279,752	-				+0.7
2,279,799	+				-0.7
2,279,800	-				-1.5
2,279,861	-		PFR28_02007	0.18	-0.5
2,279,974	+		PFR28_02007	0.50	+1.0
2,279,974	+		PFR28_02007	0.50	+0.6
2,279,974	+		PFR28_02007	0.50	-0.9
2,279,974	+		PFR28_02007	0.50	-2.9
2,279,974	+		PFR28_02007	0.50	+0.3
2,279,974	+		PFR28_02007	0.50	+0.2
2,279,975	-		PFR28_02007	0.50	-1.7
2,279,975	-		PFR28_02007	0.50	+0.3
2,279,975	-		PFR28_02007	0.50	-1.3
2,279,976	+		PFR28_02007	0.50	-2.2
2,279,976	+		PFR28_02007	0.50	+0.3
2,279,976	+		PFR28_02007	0.50	+1.0
2,279,976	+		PFR28_02007	0.50	-0.0
2,279,976	+		PFR28_02007	0.50	+0.8
2,279,976	+		PFR28_02007	0.50	+0.1
2,279,977	-		PFR28_02007	0.51	+0.9
2,279,977	-		PFR28_02007	0.51	-1.4
2,279,977	-		PFR28_02007	0.51	-0.1
2,279,977	-		PFR28_02007	0.51	-0.3
2,279,977	-		PFR28_02007	0.51	-0.5
2,279,977	-		PFR28_02007	0.51	-0.4
2,279,977	-		PFR28_02007	0.51	+1.3
2,279,977	-		PFR28_02007	0.51	+2.0
2,279,977	-		PFR28_02007	0.51	+1.6
2,279,977	-		PFR28_02007	0.51	-0.4
2,279,977	-		PFR28_02007	0.51	+0.3
2,279,977	-		PFR28_02007	0.51	+0.6
2,279,977	-		PFR28_02007	0.51	-0.8