Strain Fitness in Pseudomonas sp. RS175 around PFR28_00266

Experiment: methyl ferulate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00265 and PFR28_00266 overlap by 17 nucleotidesPFR28_00266 and PFR28_00267 are separated by 216 nucleotidesPFR28_00267 and PFR28_00268 are separated by 1 nucleotidesPFR28_00268 and PFR28_00269 are separated by 77 nucleotides PFR28_00265: PFR28_00265 - Pesticin receptor, at 293,534 to 295,903 _00265 PFR28_00266: PFR28_00266 - hypothetical protein, at 295,887 to 296,972 _00266 PFR28_00267: PFR28_00267 - Protein rof, at 297,189 to 297,455 _00267 PFR28_00268: PFR28_00268 - hypothetical protein, at 297,457 to 297,717 _00268 PFR28_00269: PFR28_00269 - 4-hydroxy-tetrahydrodipicolinate synthase, at 297,795 to 298,682 _00269 Position (kb) 295 296 297Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 295.058 kb on + strand, within PFR28_00265at 295.059 kb on - strand, within PFR28_00265at 295.059 kb on - strand, within PFR28_00265at 295.059 kb on - strand, within PFR28_00265at 295.059 kb on - strand, within PFR28_00265at 295.062 kb on - strand, within PFR28_00265at 295.062 kb on - strand, within PFR28_00265at 295.116 kb on - strand, within PFR28_00265at 295.116 kb on - strand, within PFR28_00265at 295.142 kb on + strand, within PFR28_00265at 295.143 kb on - strand, within PFR28_00265at 295.301 kb on + strand, within PFR28_00265at 295.302 kb on - strand, within PFR28_00265at 295.322 kb on + strand, within PFR28_00265at 295.322 kb on + strand, within PFR28_00265at 295.322 kb on + strand, within PFR28_00265at 295.322 kb on + strand, within PFR28_00265at 295.322 kb on + strand, within PFR28_00265at 295.323 kb on - strand, within PFR28_00265at 295.323 kb on - strand, within PFR28_00265at 295.323 kb on - strand, within PFR28_00265at 295.323 kb on - strand, within PFR28_00265at 295.323 kb on - strand, within PFR28_00265at 295.323 kb on - strand, within PFR28_00265at 295.338 kb on - strand, within PFR28_00265at 295.338 kb on - strand, within PFR28_00265at 295.566 kb on - strand, within PFR28_00265at 295.637 kb on + strand, within PFR28_00265at 295.652 kb on + strand, within PFR28_00265at 295.652 kb on + strand, within PFR28_00265at 295.670 kb on + strandat 295.673 kb on + strandat 295.703 kb on + strandat 295.703 kb on + strandat 295.703 kb on + strandat 295.704 kb on - strandat 295.805 kb on + strandat 295.805 kb on + strandat 295.805 kb on + strandat 295.806 kb on - strandat 295.806 kb on - strandat 295.820 kb on + strandat 295.898 kb on + strandat 295.899 kb on - strandat 295.963 kb on + strandat 295.963 kb on + strandat 295.963 kb on + strandat 295.963 kb on + strandat 295.963 kb on + strandat 295.963 kb on + strandat 295.963 kb on + strandat 295.964 kb on - strandat 295.964 kb on - strandat 295.964 kb on - strandat 295.964 kb on - strandat 295.964 kb on - strandat 295.964 kb on - strandat 295.964 kb on - strandat 296.186 kb on + strand, within PFR28_00266at 296.186 kb on + strand, within PFR28_00266at 296.260 kb on + strand, within PFR28_00266at 296.260 kb on + strand, within PFR28_00266at 296.260 kb on + strand, within PFR28_00266at 296.260 kb on + strand, within PFR28_00266at 296.261 kb on - strand, within PFR28_00266at 296.261 kb on - strand, within PFR28_00266at 296.261 kb on - strand, within PFR28_00266at 296.261 kb on - strand, within PFR28_00266at 296.402 kb on - strand, within PFR28_00266at 296.421 kb on + strand, within PFR28_00266at 296.450 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.471 kb on - strand, within PFR28_00266at 296.471 kb on - strand, within PFR28_00266at 296.471 kb on - strand, within PFR28_00266at 296.471 kb on - strand, within PFR28_00266at 296.471 kb on - strand, within PFR28_00266at 296.511 kb on - strand, within PFR28_00266at 296.608 kb on + strand, within PFR28_00266at 296.609 kb on - strand, within PFR28_00266at 296.944 kb on + strandat 296.964 kb on + strandat 296.964 kb on + strandat 296.964 kb on + strandat 296.964 kb on + strandat 296.965 kb on - strandat 296.965 kb on - strandat 296.965 kb on - strandat 296.965 kb on - strandat 296.965 kb on - strandat 296.965 kb on - strandat 296.979 kb on + strandat 296.980 kb on - strandat 296.980 kb on - strandat 296.980 kb on - strandat 296.980 kb on - strandat 296.997 kb on - strandat 297.036 kb on - strandat 297.172 kb on + strandat 297.172 kb on + strandat 297.172 kb on + strandat 297.395 kb on - strand, within PFR28_00267at 297.415 kb on + strand, within PFR28_00267at 297.415 kb on + strand, within PFR28_00267at 297.416 kb on - strand, within PFR28_00267at 297.446 kb on - strandat 297.446 kb on - strandat 297.668 kb on + strand, within PFR28_00268at 297.688 kb on + strand, within PFR28_00268at 297.688 kb on + strand, within PFR28_00268at 297.688 kb on + strand, within PFR28_00268at 297.688 kb on + strand, within PFR28_00268at 297.688 kb on + strand, within PFR28_00268at 297.688 kb on + strand, within PFR28_00268at 297.688 kb on + strand, within PFR28_00268at 297.689 kb on - strand, within PFR28_00268at 297.689 kb on - strand, within PFR28_00268at 297.689 kb on - strand, within PFR28_00268at 297.689 kb on - strand, within PFR28_00268at 297.689 kb on - strand, within PFR28_00268at 297.701 kb on + strandat 297.701 kb on + strandat 297.701 kb on + strandat 297.702 kb on - strandat 297.702 kb on - strandat 297.964 kb on + strand, within PFR28_00269at 297.964 kb on + strand, within PFR28_00269at 297.964 kb on + strand, within PFR28_00269at 297.964 kb on + strand, within PFR28_00269at 297.964 kb on + strand, within PFR28_00269at 297.964 kb on + strand, within PFR28_00269at 297.965 kb on - strand, within PFR28_00269

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl ferulate (C)
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295,058 + PFR28_00265 0.64 +1.3
295,059 - PFR28_00265 0.64 -0.6
295,059 - PFR28_00265 0.64 -0.1
295,059 - PFR28_00265 0.64 +0.2
295,059 - PFR28_00265 0.64 -0.9
295,062 - PFR28_00265 0.64 +0.1
295,062 - PFR28_00265 0.64 -0.4
295,116 - PFR28_00265 0.67 +0.6
295,116 - PFR28_00265 0.67 +0.5
295,142 + PFR28_00265 0.68 +1.1
295,143 - PFR28_00265 0.68 +1.5
295,301 + PFR28_00265 0.75 +0.6
295,302 - PFR28_00265 0.75 -1.3
295,322 + PFR28_00265 0.75 +0.6
295,322 + PFR28_00265 0.75 -0.1
295,322 + PFR28_00265 0.75 +0.7
295,322 + PFR28_00265 0.75 -3.1
295,322 + PFR28_00265 0.75 +0.1
295,323 - PFR28_00265 0.75 -0.0
295,323 - PFR28_00265 0.75 +1.0
295,323 - PFR28_00265 0.75 +1.9
295,323 - PFR28_00265 0.75 +0.7
295,323 - PFR28_00265 0.75 +0.0
295,323 - PFR28_00265 0.75 -0.3
295,338 - PFR28_00265 0.76 +0.3
295,338 - PFR28_00265 0.76 -1.3
295,566 - PFR28_00265 0.86 -0.1
295,637 + PFR28_00265 0.89 -2.1
295,652 + PFR28_00265 0.89 -0.1
295,652 + PFR28_00265 0.89 +0.4
295,670 + -0.2
295,673 + +0.3
295,703 + +1.0
295,703 + +0.1
295,703 + +0.6
295,704 - -1.6
295,805 + -0.8
295,805 + -2.0
295,805 + -0.2
295,806 - +1.6
295,806 - -0.4
295,820 + -0.2
295,898 + -1.4
295,899 - +0.7
295,963 + -1.3
295,963 + +0.1
295,963 + -1.4
295,963 + -1.1
295,963 + -1.4
295,963 + -0.3
295,963 + +2.1
295,964 - +1.4
295,964 - -1.9
295,964 - +0.7
295,964 - -0.0
295,964 - +0.0
295,964 - +1.2
295,964 - -1.0
296,186 + PFR28_00266 0.28 +0.1
296,186 + PFR28_00266 0.28 +0.3
296,260 + PFR28_00266 0.34 +0.2
296,260 + PFR28_00266 0.34 -0.6
296,260 + PFR28_00266 0.34 +0.8
296,260 + PFR28_00266 0.34 +2.0
296,261 - PFR28_00266 0.34 -2.1
296,261 - PFR28_00266 0.34 -1.1
296,261 - PFR28_00266 0.34 +0.2
296,261 - PFR28_00266 0.34 +4.0
296,402 - PFR28_00266 0.47 +0.1
296,421 + PFR28_00266 0.49 +0.4
296,450 + PFR28_00266 0.52 +1.2
296,470 + PFR28_00266 0.54 +1.2
296,470 + PFR28_00266 0.54 +0.1
296,470 + PFR28_00266 0.54 +0.5
296,470 + PFR28_00266 0.54 -0.3
296,470 + PFR28_00266 0.54 +0.9
296,470 + PFR28_00266 0.54 -2.1
296,470 + PFR28_00266 0.54 -0.9
296,470 + PFR28_00266 0.54 +1.7
296,470 + PFR28_00266 0.54 -0.8
296,471 - PFR28_00266 0.54 -0.7
296,471 - PFR28_00266 0.54 -0.0
296,471 - PFR28_00266 0.54 +0.1
296,471 - PFR28_00266 0.54 +0.6
296,471 - PFR28_00266 0.54 -1.2
296,511 - PFR28_00266 0.57 +0.7
296,608 + PFR28_00266 0.66 +0.5
296,609 - PFR28_00266 0.66 +0.7
296,944 + -0.3
296,964 + -0.9
296,964 + +0.3
296,964 + +0.7
296,964 + -0.5
296,965 - +1.3
296,965 - -0.8
296,965 - +1.2
296,965 - +0.8
296,965 - +0.3
296,965 - -0.6
296,979 + -1.1
296,980 - +0.9
296,980 - -0.3
296,980 - -0.2
296,980 - -1.5
296,997 - +0.0
297,036 - +0.7
297,172 + -1.5
297,172 + +0.2
297,172 + +0.5
297,395 - PFR28_00267 0.77 -0.1
297,415 + PFR28_00267 0.85 -1.5
297,415 + PFR28_00267 0.85 +0.2
297,416 - PFR28_00267 0.85 -0.3
297,446 - -0.4
297,446 - -0.0
297,668 + PFR28_00268 0.81 +0.2
297,688 + PFR28_00268 0.89 -0.6
297,688 + PFR28_00268 0.89 +0.1
297,688 + PFR28_00268 0.89 +0.5
297,688 + PFR28_00268 0.89 -0.5
297,688 + PFR28_00268 0.89 +0.9
297,688 + PFR28_00268 0.89 -0.6
297,688 + PFR28_00268 0.89 +0.2
297,689 - PFR28_00268 0.89 -1.8
297,689 - PFR28_00268 0.89 +1.2
297,689 - PFR28_00268 0.89 +0.1
297,689 - PFR28_00268 0.89 +2.0
297,689 - PFR28_00268 0.89 +0.5
297,701 + -0.9
297,701 + +0.3
297,701 + -0.2
297,702 - +0.1
297,702 - -0.4
297,964 + PFR28_00269 0.19 -1.5
297,964 + PFR28_00269 0.19 +1.0
297,964 + PFR28_00269 0.19 -0.9
297,964 + PFR28_00269 0.19 +1.7
297,964 + PFR28_00269 0.19 -0.4
297,964 + PFR28_00269 0.19 +0.7
297,965 - PFR28_00269 0.19 +0.6

Or see this region's nucleotide sequence