Strain Fitness in Pseudomonas sp. RS175 around PFR28_04134

Experiment: methyl ferulate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04132 and PFR28_04133 overlap by 4 nucleotidesPFR28_04133 and PFR28_04134 are separated by 15 nucleotidesPFR28_04134 and PFR28_04135 are separated by 21 nucleotides PFR28_04132: PFR28_04132 - Sarcosine oxidase subunit alpha, at 4,719,847 to 4,722,864 _04132 PFR28_04133: PFR28_04133 - Sarcosine oxidase subunit delta, at 4,722,861 to 4,723,190 _04133 PFR28_04134: PFR28_04134 - Sarcosine oxidase subunit beta, at 4,723,206 to 4,724,456 _04134 PFR28_04135: PFR28_04135 - Serine hydroxymethyltransferase, at 4,724,478 to 4,725,731 _04135 Position (kb) 4723 4724 4725Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4722.368 kb on + strand, within PFR28_04132at 4722.368 kb on + strand, within PFR28_04132at 4722.369 kb on - strand, within PFR28_04132at 4722.369 kb on - strand, within PFR28_04132at 4722.369 kb on - strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.374 kb on + strand, within PFR28_04132at 4722.375 kb on - strand, within PFR28_04132at 4722.375 kb on - strand, within PFR28_04132at 4722.375 kb on - strand, within PFR28_04132at 4722.375 kb on - strand, within PFR28_04132at 4722.375 kb on - strand, within PFR28_04132at 4722.375 kb on - strand, within PFR28_04132at 4722.375 kb on - strand, within PFR28_04132at 4722.375 kb on - strand, within PFR28_04132at 4722.375 kb on - strand, within PFR28_04132at 4722.431 kb on + strand, within PFR28_04132at 4722.431 kb on + strand, within PFR28_04132at 4722.431 kb on + strand, within PFR28_04132at 4722.432 kb on - strand, within PFR28_04132at 4722.432 kb on - strand, within PFR28_04132at 4722.432 kb on - strand, within PFR28_04132at 4722.432 kb on - strand, within PFR28_04132at 4722.432 kb on - strand, within PFR28_04132at 4722.440 kb on + strand, within PFR28_04132at 4722.440 kb on + strand, within PFR28_04132at 4722.440 kb on + strand, within PFR28_04132at 4722.440 kb on + strand, within PFR28_04132at 4722.441 kb on - strand, within PFR28_04132at 4722.441 kb on - strand, within PFR28_04132at 4722.464 kb on + strand, within PFR28_04132at 4722.464 kb on + strand, within PFR28_04132at 4722.464 kb on + strand, within PFR28_04132at 4722.465 kb on - strand, within PFR28_04132at 4722.465 kb on - strand, within PFR28_04132at 4722.465 kb on - strand, within PFR28_04132at 4722.465 kb on - strand, within PFR28_04132at 4722.465 kb on - strand, within PFR28_04132at 4722.465 kb on - strand, within PFR28_04132at 4722.479 kb on + strand, within PFR28_04132at 4722.479 kb on + strand, within PFR28_04132at 4722.479 kb on + strand, within PFR28_04132at 4722.479 kb on + strand, within PFR28_04132at 4722.480 kb on - strand, within PFR28_04132at 4722.480 kb on - strand, within PFR28_04132at 4722.480 kb on - strand, within PFR28_04132at 4722.480 kb on - strand, within PFR28_04132at 4722.482 kb on + strand, within PFR28_04132at 4722.483 kb on - strand, within PFR28_04132at 4722.483 kb on - strand, within PFR28_04132at 4722.587 kb on + strandat 4722.588 kb on - strandat 4722.704 kb on + strandat 4722.704 kb on + strandat 4722.704 kb on + strandat 4722.704 kb on + strandat 4722.705 kb on - strandat 4722.705 kb on - strandat 4722.782 kb on + strandat 4722.782 kb on + strandat 4722.782 kb on + strandat 4722.782 kb on + strandat 4722.782 kb on + strandat 4722.782 kb on + strandat 4722.782 kb on + strandat 4722.782 kb on + strandat 4722.782 kb on + strandat 4722.783 kb on - strandat 4722.783 kb on - strandat 4722.864 kb on + strandat 4722.864 kb on + strandat 4722.864 kb on + strandat 4722.865 kb on - strandat 4722.865 kb on - strandat 4722.865 kb on - strandat 4722.943 kb on + strand, within PFR28_04133at 4722.943 kb on + strand, within PFR28_04133at 4722.944 kb on - strand, within PFR28_04133at 4722.961 kb on + strand, within PFR28_04133at 4722.962 kb on - strand, within PFR28_04133at 4722.992 kb on - strand, within PFR28_04133at 4722.992 kb on - strand, within PFR28_04133at 4722.992 kb on - strand, within PFR28_04133at 4723.063 kb on + strand, within PFR28_04133at 4723.063 kb on + strand, within PFR28_04133at 4723.063 kb on + strand, within PFR28_04133at 4723.063 kb on + strand, within PFR28_04133at 4723.063 kb on + strand, within PFR28_04133at 4723.064 kb on - strand, within PFR28_04133at 4723.064 kb on - strand, within PFR28_04133at 4723.064 kb on - strand, within PFR28_04133at 4723.064 kb on - strand, within PFR28_04133at 4723.064 kb on - strand, within PFR28_04133at 4723.064 kb on - strand, within PFR28_04133at 4723.064 kb on - strand, within PFR28_04133at 4723.207 kb on + strandat 4723.207 kb on + strandat 4723.323 kb on + strandat 4723.323 kb on + strandat 4723.323 kb on + strandat 4723.323 kb on + strandat 4723.323 kb on + strandat 4723.324 kb on - strandat 4723.324 kb on - strandat 4723.565 kb on + strand, within PFR28_04134at 4723.609 kb on + strand, within PFR28_04134at 4723.609 kb on + strand, within PFR28_04134at 4723.609 kb on + strand, within PFR28_04134at 4723.610 kb on - strand, within PFR28_04134at 4723.610 kb on - strand, within PFR28_04134at 4723.610 kb on - strand, within PFR28_04134at 4723.610 kb on - strand, within PFR28_04134at 4723.617 kb on + strand, within PFR28_04134at 4723.617 kb on + strand, within PFR28_04134at 4723.618 kb on - strand, within PFR28_04134at 4723.739 kb on + strand, within PFR28_04134at 4723.739 kb on + strand, within PFR28_04134at 4723.740 kb on - strand, within PFR28_04134at 4723.982 kb on - strand, within PFR28_04134at 4724.101 kb on + strand, within PFR28_04134at 4724.101 kb on + strand, within PFR28_04134at 4724.102 kb on - strand, within PFR28_04134at 4724.131 kb on + strand, within PFR28_04134at 4724.131 kb on + strand, within PFR28_04134at 4724.132 kb on - strand, within PFR28_04134at 4724.132 kb on - strand, within PFR28_04134at 4724.132 kb on - strand, within PFR28_04134at 4724.132 kb on - strand, within PFR28_04134at 4724.132 kb on - strand, within PFR28_04134at 4724.132 kb on - strand, within PFR28_04134at 4724.132 kb on - strand, within PFR28_04134at 4724.179 kb on + strand, within PFR28_04134at 4724.206 kb on + strand, within PFR28_04134at 4724.206 kb on + strand, within PFR28_04134at 4724.206 kb on + strand, within PFR28_04134at 4724.207 kb on - strand, within PFR28_04134at 4724.207 kb on - strand, within PFR28_04134at 4724.308 kb on + strand, within PFR28_04134at 4724.308 kb on + strand, within PFR28_04134at 4724.308 kb on + strand, within PFR28_04134at 4724.308 kb on + strand, within PFR28_04134at 4724.308 kb on + strand, within PFR28_04134at 4724.309 kb on - strand, within PFR28_04134at 4724.311 kb on + strand, within PFR28_04134at 4724.311 kb on + strand, within PFR28_04134at 4724.312 kb on - strand, within PFR28_04134at 4724.312 kb on - strand, within PFR28_04134at 4724.312 kb on - strand, within PFR28_04134at 4724.312 kb on - strand, within PFR28_04134at 4724.359 kb on + strandat 4724.360 kb on - strandat 4724.360 kb on - strandat 4724.447 kb on - strandat 4724.456 kb on + strandat 4724.456 kb on + strandat 4724.456 kb on + strandat 4724.457 kb on - strandat 4724.457 kb on - strandat 4724.457 kb on - strandat 4724.457 kb on - strandat 4724.457 kb on - strandat 4724.457 kb on - strandat 4724.457 kb on - strandat 4724.457 kb on - strandat 4724.464 kb on - strandat 4724.464 kb on - strandat 4724.464 kb on - strandat 4724.486 kb on - strandat 4724.805 kb on + strand, within PFR28_04135at 4724.805 kb on + strand, within PFR28_04135at 4724.805 kb on + strand, within PFR28_04135at 4724.805 kb on + strand, within PFR28_04135at 4724.805 kb on + strand, within PFR28_04135at 4724.805 kb on + strand, within PFR28_04135at 4724.805 kb on + strand, within PFR28_04135at 4724.805 kb on + strand, within PFR28_04135at 4724.805 kb on + strand, within PFR28_04135at 4724.805 kb on + strand, within PFR28_04135at 4724.805 kb on + strand, within PFR28_04135at 4724.806 kb on - strand, within PFR28_04135at 4724.806 kb on - strand, within PFR28_04135at 4724.806 kb on - strand, within PFR28_04135at 4724.806 kb on - strand, within PFR28_04135at 4724.806 kb on - strand, within PFR28_04135at 4724.872 kb on + strand, within PFR28_04135at 4725.073 kb on + strand, within PFR28_04135at 4725.074 kb on - strand, within PFR28_04135at 4725.265 kb on + strand, within PFR28_04135at 4725.298 kb on + strand, within PFR28_04135at 4725.313 kb on + strand, within PFR28_04135at 4725.313 kb on + strand, within PFR28_04135at 4725.313 kb on + strand, within PFR28_04135at 4725.313 kb on + strand, within PFR28_04135at 4725.314 kb on - strand, within PFR28_04135at 4725.314 kb on - strand, within PFR28_04135at 4725.314 kb on - strand, within PFR28_04135

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl ferulate (C)
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4,722,368 + PFR28_04132 0.84 +0.9
4,722,368 + PFR28_04132 0.84 -1.2
4,722,369 - PFR28_04132 0.84 +0.9
4,722,369 - PFR28_04132 0.84 +1.0
4,722,369 - PFR28_04132 0.84 +0.2
4,722,374 + PFR28_04132 0.84 -1.1
4,722,374 + PFR28_04132 0.84 -0.8
4,722,374 + PFR28_04132 0.84 +0.4
4,722,374 + PFR28_04132 0.84 -0.1
4,722,374 + PFR28_04132 0.84 +0.8
4,722,374 + PFR28_04132 0.84 -1.3
4,722,374 + PFR28_04132 0.84 -0.5
4,722,374 + PFR28_04132 0.84 +1.6
4,722,374 + PFR28_04132 0.84 +0.8
4,722,374 + PFR28_04132 0.84 -0.5
4,722,374 + PFR28_04132 0.84 +0.1
4,722,374 + PFR28_04132 0.84 +2.6
4,722,374 + PFR28_04132 0.84 +0.1
4,722,374 + PFR28_04132 0.84 +2.0
4,722,374 + PFR28_04132 0.84 +0.4
4,722,374 + PFR28_04132 0.84 -0.8
4,722,374 + PFR28_04132 0.84 +0.5
4,722,375 - PFR28_04132 0.84 +0.9
4,722,375 - PFR28_04132 0.84 +2.2
4,722,375 - PFR28_04132 0.84 +1.0
4,722,375 - PFR28_04132 0.84 -0.0
4,722,375 - PFR28_04132 0.84 +2.0
4,722,375 - PFR28_04132 0.84 +0.4
4,722,375 - PFR28_04132 0.84 +0.1
4,722,375 - PFR28_04132 0.84 -0.1
4,722,375 - PFR28_04132 0.84 -1.0
4,722,431 + PFR28_04132 0.86 +0.7
4,722,431 + PFR28_04132 0.86 +1.3
4,722,431 + PFR28_04132 0.86 +0.5
4,722,432 - PFR28_04132 0.86 -0.7
4,722,432 - PFR28_04132 0.86 +0.1
4,722,432 - PFR28_04132 0.86 -0.8
4,722,432 - PFR28_04132 0.86 -0.4
4,722,432 - PFR28_04132 0.86 +0.3
4,722,440 + PFR28_04132 0.86 +0.0
4,722,440 + PFR28_04132 0.86 +1.2
4,722,440 + PFR28_04132 0.86 +0.4
4,722,440 + PFR28_04132 0.86 -0.8
4,722,441 - PFR28_04132 0.86 +0.8
4,722,441 - PFR28_04132 0.86 -0.7
4,722,464 + PFR28_04132 0.87 -0.7
4,722,464 + PFR28_04132 0.87 -1.6
4,722,464 + PFR28_04132 0.87 +0.7
4,722,465 - PFR28_04132 0.87 +1.9
4,722,465 - PFR28_04132 0.87 -2.4
4,722,465 - PFR28_04132 0.87 +1.3
4,722,465 - PFR28_04132 0.87 +0.6
4,722,465 - PFR28_04132 0.87 +1.1
4,722,465 - PFR28_04132 0.87 +0.7
4,722,479 + PFR28_04132 0.87 +0.2
4,722,479 + PFR28_04132 0.87 -0.1
4,722,479 + PFR28_04132 0.87 +0.7
4,722,479 + PFR28_04132 0.87 -1.1
4,722,480 - PFR28_04132 0.87 -0.9
4,722,480 - PFR28_04132 0.87 -0.2
4,722,480 - PFR28_04132 0.87 +1.8
4,722,480 - PFR28_04132 0.87 -1.2
4,722,482 + PFR28_04132 0.87 +0.7
4,722,483 - PFR28_04132 0.87 -0.7
4,722,483 - PFR28_04132 0.87 +1.0
4,722,587 + -0.2
4,722,588 - -3.5
4,722,704 + -0.6
4,722,704 + -0.7
4,722,704 + +0.8
4,722,704 + +1.0
4,722,705 - +1.4
4,722,705 - -0.7
4,722,782 + -0.1
4,722,782 + +1.1
4,722,782 + -1.4
4,722,782 + +0.9
4,722,782 + +0.9
4,722,782 + +0.7
4,722,782 + +0.1
4,722,782 + +0.5
4,722,782 + -0.6
4,722,783 - -0.7
4,722,783 - -0.4
4,722,864 + +0.4
4,722,864 + -0.0
4,722,864 + -0.5
4,722,865 - -0.5
4,722,865 - -0.0
4,722,865 - +1.0
4,722,943 + PFR28_04133 0.25 -0.4
4,722,943 + PFR28_04133 0.25 -0.8
4,722,944 - PFR28_04133 0.25 -0.1
4,722,961 + PFR28_04133 0.30 +0.5
4,722,962 - PFR28_04133 0.31 +1.5
4,722,992 - PFR28_04133 0.40 +1.6
4,722,992 - PFR28_04133 0.40 +1.0
4,722,992 - PFR28_04133 0.40 +1.4
4,723,063 + PFR28_04133 0.61 +0.1
4,723,063 + PFR28_04133 0.61 +0.7
4,723,063 + PFR28_04133 0.61 +0.0
4,723,063 + PFR28_04133 0.61 +0.1
4,723,063 + PFR28_04133 0.61 -1.3
4,723,064 - PFR28_04133 0.62 +0.6
4,723,064 - PFR28_04133 0.62 +0.4
4,723,064 - PFR28_04133 0.62 -0.1
4,723,064 - PFR28_04133 0.62 +0.9
4,723,064 - PFR28_04133 0.62 +1.0
4,723,064 - PFR28_04133 0.62 +0.4
4,723,064 - PFR28_04133 0.62 +0.3
4,723,207 + -0.3
4,723,207 + +2.4
4,723,323 + -1.6
4,723,323 + +0.7
4,723,323 + +1.5
4,723,323 + +0.7
4,723,323 + -1.5
4,723,324 - +2.0
4,723,324 - -0.8
4,723,565 + PFR28_04134 0.29 +0.2
4,723,609 + PFR28_04134 0.32 +1.3
4,723,609 + PFR28_04134 0.32 -0.5
4,723,609 + PFR28_04134 0.32 -0.1
4,723,610 - PFR28_04134 0.32 +0.2
4,723,610 - PFR28_04134 0.32 +0.6
4,723,610 - PFR28_04134 0.32 -1.0
4,723,610 - PFR28_04134 0.32 +1.4
4,723,617 + PFR28_04134 0.33 -1.6
4,723,617 + PFR28_04134 0.33 +0.6
4,723,618 - PFR28_04134 0.33 +0.7
4,723,739 + PFR28_04134 0.43 -0.0
4,723,739 + PFR28_04134 0.43 -0.3
4,723,740 - PFR28_04134 0.43 +0.7
4,723,982 - PFR28_04134 0.62 +0.3
4,724,101 + PFR28_04134 0.72 +0.3
4,724,101 + PFR28_04134 0.72 -2.2
4,724,102 - PFR28_04134 0.72 +0.9
4,724,131 + PFR28_04134 0.74 +1.9
4,724,131 + PFR28_04134 0.74 -0.8
4,724,132 - PFR28_04134 0.74 +2.3
4,724,132 - PFR28_04134 0.74 -1.2
4,724,132 - PFR28_04134 0.74 -3.0
4,724,132 - PFR28_04134 0.74 +0.2
4,724,132 - PFR28_04134 0.74 +0.1
4,724,132 - PFR28_04134 0.74 +2.3
4,724,132 - PFR28_04134 0.74 +0.4
4,724,179 + PFR28_04134 0.78 +0.3
4,724,206 + PFR28_04134 0.80 +0.2
4,724,206 + PFR28_04134 0.80 +1.5
4,724,206 + PFR28_04134 0.80 -0.3
4,724,207 - PFR28_04134 0.80 +0.5
4,724,207 - PFR28_04134 0.80 -0.5
4,724,308 + PFR28_04134 0.88 -0.1
4,724,308 + PFR28_04134 0.88 +0.9
4,724,308 + PFR28_04134 0.88 +1.3
4,724,308 + PFR28_04134 0.88 +0.6
4,724,308 + PFR28_04134 0.88 +0.1
4,724,309 - PFR28_04134 0.88 -0.3
4,724,311 + PFR28_04134 0.88 -1.2
4,724,311 + PFR28_04134 0.88 -1.0
4,724,312 - PFR28_04134 0.88 -0.1
4,724,312 - PFR28_04134 0.88 +0.8
4,724,312 - PFR28_04134 0.88 -0.4
4,724,312 - PFR28_04134 0.88 -0.5
4,724,359 + +0.3
4,724,360 - -0.6
4,724,360 - +0.9
4,724,447 - +0.2
4,724,456 + -0.4
4,724,456 + -1.5
4,724,456 + +0.1
4,724,457 - -2.1
4,724,457 - -0.2
4,724,457 - +0.9
4,724,457 - +1.3
4,724,457 - +0.7
4,724,457 - +0.3
4,724,457 - +0.4
4,724,457 - -0.1
4,724,464 - -0.1
4,724,464 - +1.4
4,724,464 - +0.6
4,724,486 - +2.1
4,724,805 + PFR28_04135 0.26 -2.3
4,724,805 + PFR28_04135 0.26 +0.1
4,724,805 + PFR28_04135 0.26 -1.1
4,724,805 + PFR28_04135 0.26 +0.3
4,724,805 + PFR28_04135 0.26 +0.5
4,724,805 + PFR28_04135 0.26 +0.6
4,724,805 + PFR28_04135 0.26 +0.4
4,724,805 + PFR28_04135 0.26 +0.5
4,724,805 + PFR28_04135 0.26 +0.1
4,724,805 + PFR28_04135 0.26 -0.1
4,724,805 + PFR28_04135 0.26 -0.3
4,724,806 - PFR28_04135 0.26 -0.3
4,724,806 - PFR28_04135 0.26 -0.4
4,724,806 - PFR28_04135 0.26 +0.9
4,724,806 - PFR28_04135 0.26 +0.3
4,724,806 - PFR28_04135 0.26 +1.8
4,724,872 + PFR28_04135 0.31 +1.1
4,725,073 + PFR28_04135 0.47 +0.6
4,725,074 - PFR28_04135 0.48 -0.7
4,725,265 + PFR28_04135 0.63 +0.6
4,725,298 + PFR28_04135 0.65 -0.5
4,725,313 + PFR28_04135 0.67 +0.2
4,725,313 + PFR28_04135 0.67 +1.1
4,725,313 + PFR28_04135 0.67 -2.3
4,725,313 + PFR28_04135 0.67 +0.5
4,725,314 - PFR28_04135 0.67 +1.8
4,725,314 - PFR28_04135 0.67 +0.8
4,725,314 - PFR28_04135 0.67 -0.5

Or see this region's nucleotide sequence