Strain Fitness in Pseudomonas sp. RS175 around PFR28_04329

Experiment: methyl-trans-p-coumarate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl-trans-p-coumarate (C)
4,934,418	+				+1.2
4,934,418	+				-0.9
4,934,419	-				+1.0
4,934,432	-				-2.2
4,935,002	+		PFR28_04328	0.57	+0.7
4,935,002	+		PFR28_04328	0.57	-0.8
4,935,002	+		PFR28_04328	0.57	-0.6
4,935,096	-		PFR28_04328	0.67	-0.0
4,935,121	+		PFR28_04328	0.69	-0.9
4,935,121	+		PFR28_04328	0.69	-0.7
4,935,121	+		PFR28_04328	0.69	+0.9
4,935,121	+		PFR28_04328	0.69	+0.4
4,935,121	+		PFR28_04328	0.69	-0.8
4,935,121	+		PFR28_04328	0.69	-1.0
4,935,121	+		PFR28_04328	0.69	+0.8
4,935,121	+		PFR28_04328	0.69	+0.8
4,935,122	-		PFR28_04328	0.69	+0.1
4,935,122	-		PFR28_04328	0.69	-0.1
4,935,122	-		PFR28_04328	0.69	-1.1
4,935,122	-		PFR28_04328	0.69	+0.4
4,935,122	-		PFR28_04328	0.69	-1.2
4,935,122	-		PFR28_04328	0.69	+0.8
4,935,122	-		PFR28_04328	0.69	+0.1
4,935,133	+		PFR28_04328	0.70	+0.5
4,935,133	+		PFR28_04328	0.70	+0.6
4,935,133	+		PFR28_04328	0.70	+0.9
4,935,157	-		PFR28_04328	0.73	-1.8
4,935,299	+		PFR28_04328	0.88	+1.1
4,935,300	-		PFR28_04328	0.88	-1.1
4,935,300	-		PFR28_04328	0.88	-2.2
4,935,314	+		PFR28_04328	0.89	-2.3
4,935,314	+		PFR28_04328	0.89	+0.8
4,935,315	-		PFR28_04328	0.89	+0.2
4,935,616	+				-0.3
4,935,617	-				-2.4
4,935,617	-				-0.1
4,935,617	-				+0.6
4,935,722	-		PFR28_04329	0.11	+1.1
4,935,761	-		PFR28_04329	0.13	-0.2
4,935,973	+		PFR28_04329	0.20	-1.4
4,935,974	-		PFR28_04329	0.21	+0.6
4,935,974	-		PFR28_04329	0.21	+1.2
4,935,974	-		PFR28_04329	0.21	-0.8
4,935,982	+		PFR28_04329	0.21	-0.2
4,935,982	+		PFR28_04329	0.21	+0.7
4,935,982	+		PFR28_04329	0.21	-0.2
4,935,982	+		PFR28_04329	0.21	+4.5
4,935,982	+		PFR28_04329	0.21	+0.2
4,935,982	+		PFR28_04329	0.21	-2.6
4,935,983	-		PFR28_04329	0.21	+0.3
4,935,983	-		PFR28_04329	0.21	+0.3
4,935,983	-		PFR28_04329	0.21	-1.4
4,935,983	-		PFR28_04329	0.21	-1.5
4,935,983	-		PFR28_04329	0.21	+1.7
4,935,983	-		PFR28_04329	0.21	-0.2
4,935,983	-		PFR28_04329	0.21	+0.2
4,935,983	-		PFR28_04329	0.21	+0.8
4,936,026	+		PFR28_04329	0.22	+0.2
4,936,026	+		PFR28_04329	0.22	+2.5
4,936,026	+		PFR28_04329	0.22	+0.3
4,936,026	+		PFR28_04329	0.22	+1.7
4,936,026	+		PFR28_04329	0.22	+0.1
4,936,026	+		PFR28_04329	0.22	+1.1
4,936,026	+		PFR28_04329	0.22	-2.2
4,936,026	+		PFR28_04329	0.22	+0.1
4,936,026	+		PFR28_04329	0.22	-1.4
4,936,026	+		PFR28_04329	0.22	-0.8
4,936,027	-		PFR28_04329	0.22	+0.9
4,936,027	-		PFR28_04329	0.22	+0.3
4,936,027	-		PFR28_04329	0.22	+0.1
4,936,027	-		PFR28_04329	0.22	-0.6
4,936,027	-		PFR28_04329	0.22	-0.6
4,936,027	-		PFR28_04329	0.22	+0.4
4,936,028	+		PFR28_04329	0.23	+1.2
4,936,028	+		PFR28_04329	0.23	+0.4
4,936,028	+		PFR28_04329	0.23	-1.2
4,936,028	+		PFR28_04329	0.23	-1.6
4,936,029	-		PFR28_04329	0.23	-1.8
4,936,029	-		PFR28_04329	0.23	+1.1
4,936,029	-		PFR28_04329	0.23	+1.2
4,936,453	+		PFR28_04329	0.38	-1.8
4,936,453	+		PFR28_04329	0.38	+1.1
4,936,454	-		PFR28_04329	0.38	+0.0
4,936,454	-		PFR28_04329	0.38	-0.2
4,936,454	-		PFR28_04329	0.38	+2.7
4,936,482	+		PFR28_04329	0.39	-0.5
4,936,482	+		PFR28_04329	0.39	+0.9
4,936,482	+		PFR28_04329	0.39	-0.3
4,936,482	+		PFR28_04329	0.39	+0.1
4,936,482	+		PFR28_04329	0.39	+1.7
4,936,482	+		PFR28_04329	0.39	-1.0
4,936,483	-		PFR28_04329	0.39	+0.1
4,936,483	-		PFR28_04329	0.39	-1.4
4,936,483	-		PFR28_04329	0.39	+2.6
4,936,868	+		PFR28_04329	0.53	+0.2
4,937,208	+		PFR28_04329	0.66	+1.1
4,937,208	+		PFR28_04329	0.66	+1.5
4,937,209	-		PFR28_04329	0.66	+0.2
4,937,209	-		PFR28_04329	0.66	-0.5
4,937,235	+		PFR28_04329	0.67	-2.3
4,937,235	+		PFR28_04329	0.67	-0.3
4,937,236	-		PFR28_04329	0.67	-1.4
4,937,346	+		PFR28_04329	0.71	-0.6
4,937,346	+		PFR28_04329	0.71	-0.5
4,937,346	+		PFR28_04329	0.71	+0.8
4,937,346	+		PFR28_04329	0.71	+0.2
4,937,346	+		PFR28_04329	0.71	+0.6
4,937,346	+		PFR28_04329	0.71	-0.5
4,937,346	+		PFR28_04329	0.71	+1.6
4,937,347	-		PFR28_04329	0.71	-2.6
4,937,347	-		PFR28_04329	0.71	-1.1
4,937,347	-		PFR28_04329	0.71	-0.7
4,937,417	+		PFR28_04329	0.73	-1.9
4,937,417	+		PFR28_04329	0.73	+0.4
4,937,417	+		PFR28_04329	0.73	-0.9
4,937,418	-		PFR28_04329	0.73	-1.2
4,937,418	-		PFR28_04329	0.73	+0.8
4,937,418	-		PFR28_04329	0.73	+0.3
4,937,421	+		PFR28_04329	0.74	+0.9
4,937,421	+		PFR28_04329	0.74	+0.0
4,937,421	+		PFR28_04329	0.74	-0.4
4,937,421	+		PFR28_04329	0.74	+1.9
4,937,421	+		PFR28_04329	0.74	+0.5
4,937,421	+		PFR28_04329	0.74	+0.3
4,937,422	-		PFR28_04329	0.74	-0.4
4,937,422	-		PFR28_04329	0.74	+0.6
4,937,422	-		PFR28_04329	0.74	+0.2
4,937,422	-		PFR28_04329	0.74	-1.7
4,937,655	+		PFR28_04329	0.82	+1.0
4,937,655	+		PFR28_04329	0.82	-3.8
4,937,655	+		PFR28_04329	0.82	-0.3
4,937,707	-		PFR28_04329	0.84	-0.7
4,937,817	+		PFR28_04329	0.88	-2.3
4,937,818	-		PFR28_04329	0.88	+0.4
4,937,818	-		PFR28_04329	0.88	+0.8
4,937,818	-		PFR28_04329	0.88	-0.7
4,937,818	-		PFR28_04329	0.88	+1.9
4,937,818	-		PFR28_04329	0.88	-1.7
4,937,818	-		PFR28_04329	0.88	-0.4
4,938,000	+				+0.8
4,938,001	-				+3.8
4,938,107	+				-1.1
4,938,145	+				-2.7
4,938,145	+				-0.6
4,938,146	-				-0.3
4,938,146	-				+0.5
4,938,146	-				+0.9
4,938,146	-				-0.2
4,938,197	+				+0.5
4,938,197	+				-0.1
4,938,198	-				-0.0
4,938,198	-				-1.3
4,938,198	-				-0.8
4,938,227	+				-0.2
4,938,227	+				+0.5
4,938,248	+				-0.3
4,938,248	+				+1.0
4,938,248	+				-2.0
4,938,248	+				+1.8
4,938,248	+				+0.7
4,938,248	+				+1.5
4,938,248	+				+2.2
4,938,248	+				+0.9
4,938,248	+				+1.3
4,938,248	+				-1.7
4,938,248	+				-0.5
4,938,248	+				-3.3
4,938,248	+				-2.7
4,938,248	+				+1.2
4,938,248	+				+1.3
4,938,248	+				-0.1
4,938,249	-				+1.1
4,938,249	-				-0.6
4,938,249	-				-1.3
4,938,249	-				-0.2
4,938,249	-				+0.9
4,938,249	-				+1.9
4,938,249	-				-0.7
4,938,249	-				+0.8
4,938,249	-				+0.6
4,938,249	-				-0.4
4,938,249	-				+3.0
4,938,249	-				+0.7
4,938,249	-				+0.3
4,938,422	+		PFR28_04330	0.25	+0.1
4,938,423	-		PFR28_04330	0.25	+0.6
4,938,542	+		PFR28_04330	0.36	-0.6
4,938,543	-		PFR28_04330	0.36	-0.7
4,938,543	-		PFR28_04330	0.36	-0.1
4,938,578	+		PFR28_04330	0.39	-1.1
4,938,578	+		PFR28_04330	0.39	-1.1
4,938,579	-		PFR28_04330	0.39	+0.7
4,938,579	-		PFR28_04330	0.39	+0.7
4,938,579	-		PFR28_04330	0.39	+0.5
4,938,691	+		PFR28_04330	0.49	-0.7
4,938,691	+		PFR28_04330	0.49	+0.8
4,938,692	-		PFR28_04330	0.49	+0.1
4,938,692	-		PFR28_04330	0.49	+1.3
4,938,823	+		PFR28_04330	0.61	+0.0
4,938,823	+		PFR28_04330	0.61	+0.6
4,938,823	+		PFR28_04330	0.61	-0.2
4,938,823	+		PFR28_04330	0.61	-0.8
4,938,824	-		PFR28_04330	0.61	+0.2
4,938,824	-		PFR28_04330	0.61	+0.0
4,938,824	-		PFR28_04330	0.61	+0.9
4,938,824	-		PFR28_04330	0.61	-0.1
4,938,824	-		PFR28_04330	0.61	+1.8
4,938,824	-		PFR28_04330	0.61	-0.2
4,938,844	+		PFR28_04330	0.63	+0.6
4,938,844	+		PFR28_04330	0.63	-2.6
4,938,844	+		PFR28_04330	0.63	+0.9
4,938,844	+		PFR28_04330	0.63	-2.9
4,938,844	+		PFR28_04330	0.63	+0.8
4,938,845	-		PFR28_04330	0.63	+0.5
4,938,845	-		PFR28_04330	0.63	-0.1
4,938,935	+		PFR28_04330	0.71	+0.8
4,938,935	+		PFR28_04330	0.71	-1.0
4,938,935	+		PFR28_04330	0.71	-0.2
4,938,935	+		PFR28_04330	0.71	-0.0
4,938,935	+		PFR28_04330	0.71	-0.4
4,938,935	+		PFR28_04330	0.71	-0.6
4,938,936	-		PFR28_04330	0.71	+1.0
4,938,936	-		PFR28_04330	0.71	-0.4
4,939,054	+		PFR28_04330	0.82	-1.4
4,939,054	+		PFR28_04330	0.82	-0.2
4,939,054	+		PFR28_04330	0.82	-0.0