Strain Fitness in Pseudomonas sp. RS175 around PFR28_03693

Experiment: methyl-trans-p-coumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03690 and PFR28_03691 are separated by 253 nucleotidesPFR28_03691 and PFR28_03692 are separated by 27 nucleotidesPFR28_03692 and PFR28_03693 are separated by 66 nucleotidesPFR28_03693 and PFR28_03694 are separated by 545 nucleotides PFR28_03690: PFR28_03690 - 23S ribosomal RNA, at 4,255,136 to 4,258,024 _03690 PFR28_03691: PFR28_03691 - tRNA-Ala, at 4,258,278 to 4,258,353 _03691 PFR28_03692: PFR28_03692 - tRNA-Ile, at 4,258,381 to 4,258,457 _03692 PFR28_03693: PFR28_03693 - 16S ribosomal RNA, at 4,258,524 to 4,260,055 _03693 PFR28_03694: PFR28_03694 - Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 4,260,601 to 4,261,221 _03694 Position (kb) 4258 4259 4260 4261Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4260.694 kb on + strand, within PFR28_03694at 4260.694 kb on + strand, within PFR28_03694at 4260.694 kb on + strand, within PFR28_03694at 4260.704 kb on + strand, within PFR28_03694at 4260.704 kb on + strand, within PFR28_03694at 4260.704 kb on + strand, within PFR28_03694at 4260.704 kb on + strand, within PFR28_03694at 4260.705 kb on - strand, within PFR28_03694at 4260.705 kb on - strand, within PFR28_03694at 4260.705 kb on - strand, within PFR28_03694at 4260.705 kb on - strand, within PFR28_03694at 4260.705 kb on - strand, within PFR28_03694at 4260.705 kb on - strand, within PFR28_03694at 4260.705 kb on - strand, within PFR28_03694at 4260.705 kb on - strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.747 kb on + strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.748 kb on - strand, within PFR28_03694at 4260.825 kb on + strand, within PFR28_03694at 4260.826 kb on - strand, within PFR28_03694at 4260.828 kb on - strand, within PFR28_03694at 4260.856 kb on + strand, within PFR28_03694at 4260.885 kb on + strand, within PFR28_03694at 4260.885 kb on + strand, within PFR28_03694at 4260.885 kb on + strand, within PFR28_03694at 4260.885 kb on + strand, within PFR28_03694at 4260.885 kb on + strand, within PFR28_03694at 4260.885 kb on + strand, within PFR28_03694at 4260.885 kb on + strand, within PFR28_03694at 4260.885 kb on + strand, within PFR28_03694at 4260.886 kb on - strand, within PFR28_03694at 4260.886 kb on - strand, within PFR28_03694at 4260.886 kb on - strand, within PFR28_03694at 4260.890 kb on + strand, within PFR28_03694at 4260.890 kb on + strand, within PFR28_03694at 4260.890 kb on + strand, within PFR28_03694at 4260.890 kb on + strand, within PFR28_03694at 4260.890 kb on + strand, within PFR28_03694at 4260.890 kb on + strand, within PFR28_03694at 4260.891 kb on - strand, within PFR28_03694at 4260.891 kb on - strand, within PFR28_03694at 4260.891 kb on - strand, within PFR28_03694at 4260.891 kb on - strand, within PFR28_03694at 4260.891 kb on - strand, within PFR28_03694at 4260.916 kb on + strand, within PFR28_03694at 4260.917 kb on - strand, within PFR28_03694at 4260.917 kb on - strand, within PFR28_03694at 4260.953 kb on + strand, within PFR28_03694at 4260.953 kb on + strand, within PFR28_03694at 4260.953 kb on + strand, within PFR28_03694at 4260.953 kb on + strand, within PFR28_03694at 4260.954 kb on - strand, within PFR28_03694at 4260.954 kb on - strand, within PFR28_03694at 4260.977 kb on + strand, within PFR28_03694at 4260.977 kb on + strand, within PFR28_03694at 4260.977 kb on + strand, within PFR28_03694at 4260.977 kb on + strand, within PFR28_03694at 4260.978 kb on - strand, within PFR28_03694at 4260.978 kb on - strand, within PFR28_03694at 4260.978 kb on - strand, within PFR28_03694at 4260.978 kb on - strand, within PFR28_03694at 4260.978 kb on - strand, within PFR28_03694

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl-trans-p-coumarate (C)
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4,260,694 + PFR28_03694 0.15 -2.9
4,260,694 + PFR28_03694 0.15 -0.1
4,260,694 + PFR28_03694 0.15 +0.4
4,260,704 + PFR28_03694 0.17 -0.4
4,260,704 + PFR28_03694 0.17 +0.8
4,260,704 + PFR28_03694 0.17 +0.2
4,260,704 + PFR28_03694 0.17 +0.2
4,260,705 - PFR28_03694 0.17 +0.4
4,260,705 - PFR28_03694 0.17 +0.5
4,260,705 - PFR28_03694 0.17 +1.3
4,260,705 - PFR28_03694 0.17 -1.9
4,260,705 - PFR28_03694 0.17 +0.2
4,260,705 - PFR28_03694 0.17 -3.9
4,260,705 - PFR28_03694 0.17 -0.9
4,260,705 - PFR28_03694 0.17 +2.2
4,260,747 + PFR28_03694 0.24 +0.1
4,260,747 + PFR28_03694 0.24 -0.9
4,260,747 + PFR28_03694 0.24 -1.8
4,260,747 + PFR28_03694 0.24 +0.7
4,260,747 + PFR28_03694 0.24 -1.1
4,260,747 + PFR28_03694 0.24 -0.1
4,260,747 + PFR28_03694 0.24 +1.1
4,260,747 + PFR28_03694 0.24 -1.8
4,260,747 + PFR28_03694 0.24 -1.6
4,260,747 + PFR28_03694 0.24 -2.6
4,260,747 + PFR28_03694 0.24 +0.1
4,260,747 + PFR28_03694 0.24 -1.1
4,260,747 + PFR28_03694 0.24 -0.0
4,260,747 + PFR28_03694 0.24 -3.2
4,260,747 + PFR28_03694 0.24 -3.4
4,260,747 + PFR28_03694 0.24 +0.7
4,260,747 + PFR28_03694 0.24 -2.0
4,260,747 + PFR28_03694 0.24 -2.6
4,260,747 + PFR28_03694 0.24 -0.7
4,260,747 + PFR28_03694 0.24 -1.4
4,260,748 - PFR28_03694 0.24 -0.3
4,260,748 - PFR28_03694 0.24 -0.1
4,260,748 - PFR28_03694 0.24 +1.3
4,260,748 - PFR28_03694 0.24 +1.0
4,260,748 - PFR28_03694 0.24 +0.1
4,260,748 - PFR28_03694 0.24 -1.0
4,260,748 - PFR28_03694 0.24 +0.1
4,260,748 - PFR28_03694 0.24 -0.0
4,260,748 - PFR28_03694 0.24 -2.3
4,260,748 - PFR28_03694 0.24 -0.2
4,260,748 - PFR28_03694 0.24 -0.2
4,260,748 - PFR28_03694 0.24 +0.5
4,260,748 - PFR28_03694 0.24 +1.5
4,260,748 - PFR28_03694 0.24 -1.3
4,260,748 - PFR28_03694 0.24 -0.7
4,260,748 - PFR28_03694 0.24 -0.7
4,260,748 - PFR28_03694 0.24 +0.6
4,260,748 - PFR28_03694 0.24 +0.4
4,260,748 - PFR28_03694 0.24 -1.1
4,260,748 - PFR28_03694 0.24 -0.6
4,260,825 + PFR28_03694 0.36 +1.4
4,260,826 - PFR28_03694 0.36 +1.0
4,260,828 - PFR28_03694 0.37 -0.1
4,260,856 + PFR28_03694 0.41 -2.9
4,260,885 + PFR28_03694 0.46 -0.4
4,260,885 + PFR28_03694 0.46 -0.4
4,260,885 + PFR28_03694 0.46 -0.3
4,260,885 + PFR28_03694 0.46 -0.4
4,260,885 + PFR28_03694 0.46 +0.9
4,260,885 + PFR28_03694 0.46 -0.4
4,260,885 + PFR28_03694 0.46 -2.7
4,260,885 + PFR28_03694 0.46 -0.4
4,260,886 - PFR28_03694 0.46 -0.8
4,260,886 - PFR28_03694 0.46 +0.9
4,260,886 - PFR28_03694 0.46 -0.9
4,260,890 + PFR28_03694 0.47 +0.2
4,260,890 + PFR28_03694 0.47 -0.1
4,260,890 + PFR28_03694 0.47 -0.6
4,260,890 + PFR28_03694 0.47 +1.7
4,260,890 + PFR28_03694 0.47 -0.7
4,260,890 + PFR28_03694 0.47 -0.2
4,260,891 - PFR28_03694 0.47 -1.7
4,260,891 - PFR28_03694 0.47 -1.7
4,260,891 - PFR28_03694 0.47 +1.4
4,260,891 - PFR28_03694 0.47 +0.5
4,260,891 - PFR28_03694 0.47 +0.5
4,260,916 + PFR28_03694 0.51 -1.1
4,260,917 - PFR28_03694 0.51 -0.0
4,260,917 - PFR28_03694 0.51 +0.2
4,260,953 + PFR28_03694 0.57 -0.1
4,260,953 + PFR28_03694 0.57 -2.4
4,260,953 + PFR28_03694 0.57 -1.0
4,260,953 + PFR28_03694 0.57 -3.9
4,260,954 - PFR28_03694 0.57 -2.1
4,260,954 - PFR28_03694 0.57 -0.1
4,260,977 + PFR28_03694 0.61 -1.1
4,260,977 + PFR28_03694 0.61 -0.2
4,260,977 + PFR28_03694 0.61 +0.1
4,260,977 + PFR28_03694 0.61 -2.0
4,260,978 - PFR28_03694 0.61 -1.1
4,260,978 - PFR28_03694 0.61 -0.3
4,260,978 - PFR28_03694 0.61 +4.0
4,260,978 - PFR28_03694 0.61 -0.1
4,260,978 - PFR28_03694 0.61 -0.9

Or see this region's nucleotide sequence