Strain Fitness in Pseudomonas sp. RS175 around PFR28_03073

Experiment: methyl-trans-p-coumarate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl-trans-p-coumarate (C)
3,574,003	+		PFR28_03072	0.77	+2.7
3,574,003	+		PFR28_03072	0.77	-0.1
3,574,003	+		PFR28_03072	0.77	-0.3
3,574,003	+		PFR28_03072	0.77	-0.6
3,574,003	+		PFR28_03072	0.77	-0.0
3,574,003	+		PFR28_03072	0.77	-2.2
3,574,003	+		PFR28_03072	0.77	-0.1
3,574,003	+		PFR28_03072	0.77	+0.2
3,574,003	+		PFR28_03072	0.77	-1.3
3,574,003	+		PFR28_03072	0.77	+1.2
3,574,003	+		PFR28_03072	0.77	+0.7
3,574,004	-		PFR28_03072	0.77	-1.8
3,574,004	-		PFR28_03072	0.77	-0.7
3,574,004	-		PFR28_03072	0.77	+1.1
3,574,004	-		PFR28_03072	0.77	-0.7
3,574,004	-		PFR28_03072	0.77	-3.0
3,574,004	-		PFR28_03072	0.77	-0.5
3,574,005	+		PFR28_03072	0.77	+2.9
3,574,006	-		PFR28_03072	0.77	+0.3
3,574,026	+		PFR28_03072	0.78	-1.1
3,574,421	-				+1.3
3,574,608	+				+2.1
3,574,609	-				+1.7
3,574,609	-				+0.9
3,574,614	+				+1.5
3,574,614	+				+1.9
3,574,614	+				+2.0
3,574,614	+				+1.4
3,574,614	+				-0.7
3,574,614	+				+0.3
3,574,614	+				+1.5
3,574,614	+				+1.4
3,574,614	+				-1.7
3,574,614	+				+0.8
3,574,614	+				+1.5
3,574,614	+				-0.3
3,574,615	-				+0.3
3,574,615	-				+0.8
3,574,615	-				+0.4
3,574,615	-				+2.5
3,574,615	-				-0.9
3,574,615	-				-0.6
3,574,615	-				-0.3
3,574,616	+				+1.8
3,574,650	+				+1.9
3,574,651	-				-1.3
3,574,679	+				+1.7
3,574,679	+				+1.1
3,574,679	+				+2.1
3,574,679	+				+2.5
3,574,679	+				+1.6
3,574,679	+				+1.2
3,574,679	+				+2.1
3,574,679	+				+2.8
3,574,679	+				+1.3
3,574,679	+				+1.5
3,574,679	+				+0.7
3,574,679	+				+1.5
3,574,679	+				-0.2
3,574,679	+				+0.4
3,574,679	+				+0.7
3,574,679	+				+1.1
3,574,679	+				+1.7
3,574,680	-				+0.5
3,574,680	-				-2.1
3,574,680	-				-1.8
3,574,680	-				+0.5
3,574,680	-				+3.2
3,574,680	-				+0.6
3,574,680	-				+0.4
3,574,680	-				+0.2
3,574,680	-				+1.4
3,574,680	-				-0.0
3,574,680	-				+1.0
3,574,680	-				-0.3
3,574,680	-				-0.0
3,574,680	-				+1.0
3,574,680	-				-1.1
3,574,680	-				+0.7
3,574,680	-				-1.7
3,574,680	-				-0.7
3,574,680	-				+0.8
3,574,680	-				-0.4
3,574,815	+		PFR28_03073	0.25	+2.6
3,574,815	+		PFR28_03073	0.25	+1.7
3,574,815	+		PFR28_03073	0.25	+1.6
3,574,816	-		PFR28_03073	0.25	+3.5
3,574,907	+		PFR28_03073	0.45	+3.4
3,574,907	+		PFR28_03073	0.45	+2.2
3,574,907	+		PFR28_03073	0.45	+2.2
3,574,934	+		PFR28_03073	0.52	+1.1
3,574,934	+		PFR28_03073	0.52	+2.5
3,574,934	+		PFR28_03073	0.52	+2.0
3,574,935	-		PFR28_03073	0.52	+1.8
3,574,935	-		PFR28_03073	0.52	+3.4
3,574,935	-		PFR28_03073	0.52	+2.1
3,575,091	+		PFR28_03073	0.87	+1.5
3,575,092	-		PFR28_03073	0.87	+1.3
3,575,092	-		PFR28_03073	0.87	+1.9
3,575,092	-		PFR28_03073	0.87	+2.6
3,575,092	-		PFR28_03073	0.87	+3.1
3,575,098	-		PFR28_03073	0.89	+1.1
3,575,130	+				+1.6
3,575,130	+				+2.2
3,575,130	+				+3.1
3,575,130	+				+2.8
3,575,131	-				+3.2
3,575,131	-				+3.4
3,575,131	-				+1.2
3,575,131	-				+2.5
3,575,131	-				+1.9
3,575,131	-				+2.5
3,575,131	-				+2.2
3,575,131	-				+2.2
3,575,213	-				-3.2
3,575,213	-				-2.2
3,575,357	+		PFR28_03074	0.32	+0.9
3,575,509	+		PFR28_03074	0.66	+1.2
3,575,509	+		PFR28_03074	0.66	+0.3
3,575,510	-		PFR28_03074	0.66	-0.4
3,575,521	+		PFR28_03074	0.68	+0.8
3,575,521	+		PFR28_03074	0.68	+0.2
3,575,521	+		PFR28_03074	0.68	+2.7
3,575,521	+		PFR28_03074	0.68	+1.8
3,575,521	+		PFR28_03074	0.68	+1.8
3,575,522	-		PFR28_03074	0.69	-0.1
3,575,522	-		PFR28_03074	0.69	-1.8
3,575,522	-		PFR28_03074	0.69	-1.7
3,575,522	-		PFR28_03074	0.69	-0.5
3,575,522	-		PFR28_03074	0.69	-2.4
3,575,568	+		PFR28_03074	0.79	+2.3
3,575,568	+		PFR28_03074	0.79	+3.0
3,575,568	+		PFR28_03074	0.79	+2.6
3,575,568	+		PFR28_03074	0.79	+1.2
3,575,568	+		PFR28_03074	0.79	-0.0
3,575,568	+		PFR28_03074	0.79	+0.8
3,575,569	-		PFR28_03074	0.79	-1.3
3,575,569	-		PFR28_03074	0.79	-1.9
3,575,569	-		PFR28_03074	0.79	-1.7
3,575,655	+				+1.6
3,575,655	+				+3.9
3,575,655	+				+3.1
3,575,656	-				+0.1
3,575,656	-				-0.9
3,575,656	-				-1.4
3,575,663	+				+0.8
3,575,663	+				+1.2
3,575,664	-				-1.4
3,575,664	-				-0.2
3,575,865	+		PFR28_03075	0.59	+1.2
3,575,865	+		PFR28_03075	0.59	+0.3
3,575,866	-		PFR28_03075	0.59	-0.9
3,575,866	-		PFR28_03075	0.59	+0.8
3,575,878	-		PFR28_03075	0.63	-0.4
3,575,878	-		PFR28_03075	0.63	-0.5
3,575,940	+		PFR28_03075	0.80	+2.5
3,575,940	+		PFR28_03075	0.80	+5.8
3,575,940	+		PFR28_03075	0.80	+1.4
3,575,940	+		PFR28_03075	0.80	+1.8
3,575,940	+		PFR28_03075	0.80	+2.0
3,575,940	+		PFR28_03075	0.80	+1.6
3,575,940	+		PFR28_03075	0.80	+1.8
3,575,941	-		PFR28_03075	0.81	-1.5
3,575,941	-		PFR28_03075	0.81	-0.8
3,575,941	-		PFR28_03075	0.81	+1.6
3,575,941	-		PFR28_03075	0.81	-1.1
3,575,941	-		PFR28_03075	0.81	-0.3
3,575,941	-		PFR28_03075	0.81	+0.1
3,575,941	-		PFR28_03075	0.81	-0.3
3,575,979	+				+0.9
3,575,979	+				+1.9
3,575,979	+				+2.1
3,575,980	-				-1.4