Strain Fitness in Pseudomonas sp. RS175 around PFR28_02091

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
2,399,918	-		PFR28_02090	0.79	+0.9
2,400,035	+		PFR28_02090	0.82	+0.3
2,400,092	+		PFR28_02090	0.83	+2.1
2,400,092	+		PFR28_02090	0.83	-0.7
2,400,092	+		PFR28_02090	0.83	+1.1
2,400,092	+		PFR28_02090	0.83	+0.0
2,400,092	+		PFR28_02090	0.83	+1.9
2,400,092	+		PFR28_02090	0.83	+0.9
2,400,092	+		PFR28_02090	0.83	+0.3
2,400,093	-		PFR28_02090	0.83	-0.4
2,400,131	+		PFR28_02090	0.84	-0.4
2,400,131	+		PFR28_02090	0.84	-0.2
2,400,490	+				+1.1
2,400,490	+				-0.7
2,400,491	-				+1.1
2,400,491	-				-0.2
2,400,546	+				-0.6
2,400,546	+				+0.8
2,400,546	+				+1.4
2,400,546	+				-0.5
2,400,546	+				-1.4
2,400,546	+				-1.1
2,400,546	+				-0.7
2,400,546	+				-0.6
2,400,546	+				+0.0
2,400,546	+				-0.5
2,400,546	+				+0.2
2,400,547	-				-0.2
2,400,547	-				-1.5
2,400,547	-				+0.9
2,400,547	-				-0.2
2,400,547	-				-0.6
2,400,547	-				-1.0
2,400,547	-				+0.1
2,400,547	-				-1.0
2,400,547	-				+0.9
2,400,547	-				-0.1
2,400,547	-				+0.4
2,400,547	-				-0.4
2,400,745	+				-1.7
2,400,745	+				-0.2
2,400,745	+				-1.6
2,400,746	-				-2.5
2,400,888	+				-0.2
2,400,889	-				-0.8
2,400,977	+		PFR28_02091	0.15	-0.5
2,401,017	+		PFR28_02091	0.17	-1.0
2,401,018	-		PFR28_02091	0.17	+0.3
2,401,074	-		PFR28_02091	0.21	-2.1
2,401,425	+		PFR28_02091	0.42	-1.1
2,401,425	+		PFR28_02091	0.42	-0.1
2,401,425	+		PFR28_02091	0.42	-2.1
2,401,425	+		PFR28_02091	0.42	+0.0
2,401,425	+		PFR28_02091	0.42	-1.0
2,401,425	+		PFR28_02091	0.42	-0.7
2,401,425	+		PFR28_02091	0.42	-0.7
2,401,425	+		PFR28_02091	0.42	-1.7
2,401,426	-		PFR28_02091	0.42	-2.7
2,401,426	-		PFR28_02091	0.42	-1.8
2,401,426	-		PFR28_02091	0.42	-1.4
2,401,426	-		PFR28_02091	0.42	-2.7
2,401,426	-		PFR28_02091	0.42	+0.3
2,401,426	-		PFR28_02091	0.42	+0.1
2,401,426	-		PFR28_02091	0.42	-1.4
2,401,426	-		PFR28_02091	0.42	-1.9
2,401,426	-		PFR28_02091	0.42	-1.0
2,401,426	-		PFR28_02091	0.42	-1.0
2,401,426	-		PFR28_02091	0.42	-0.9
2,401,461	+		PFR28_02091	0.44	-1.2
2,401,461	+		PFR28_02091	0.44	-2.4
2,401,461	+		PFR28_02091	0.44	-0.7
2,401,461	+		PFR28_02091	0.44	-2.5
2,401,461	+		PFR28_02091	0.44	-1.4
2,401,461	+		PFR28_02091	0.44	-1.5
2,401,462	-		PFR28_02091	0.44	-0.7
2,401,462	-		PFR28_02091	0.44	+0.6
2,401,462	-		PFR28_02091	0.44	-0.5
2,401,462	-		PFR28_02091	0.44	-0.5
2,401,462	-		PFR28_02091	0.44	-0.9
2,401,534	-		PFR28_02091	0.49	-0.6
2,401,534	-		PFR28_02091	0.49	-0.1
2,401,534	-		PFR28_02091	0.49	-1.5
2,401,551	+		PFR28_02091	0.50	+1.2
2,401,551	+		PFR28_02091	0.50	-1.1
2,401,551	+		PFR28_02091	0.50	-0.5
2,401,551	+		PFR28_02091	0.50	-1.7
2,401,551	+		PFR28_02091	0.50	-0.5
2,401,551	+		PFR28_02091	0.50	-1.3
2,401,552	-		PFR28_02091	0.50	+0.5
2,401,552	-		PFR28_02091	0.50	-1.1
2,401,552	-		PFR28_02091	0.50	-3.4
2,401,552	-		PFR28_02091	0.50	-0.2
2,401,552	-		PFR28_02091	0.50	+0.5
2,401,728	+		PFR28_02091	0.60	-0.6
2,401,728	+		PFR28_02091	0.60	-0.3
2,401,728	+		PFR28_02091	0.60	-1.2
2,401,728	+		PFR28_02091	0.60	-0.8
2,401,728	+		PFR28_02091	0.60	+2.9
2,401,728	+		PFR28_02091	0.60	-1.7
2,401,728	+		PFR28_02091	0.60	-0.3
2,401,728	+		PFR28_02091	0.60	-1.1
2,401,728	+		PFR28_02091	0.60	+2.4
2,401,729	-		PFR28_02091	0.60	-0.2
2,401,729	-		PFR28_02091	0.60	-0.5
2,401,729	-		PFR28_02091	0.60	-3.4
2,401,729	-		PFR28_02091	0.60	-1.5
2,401,729	-		PFR28_02091	0.60	-1.5
2,401,729	-		PFR28_02091	0.60	+0.1
2,401,729	-		PFR28_02091	0.60	+0.3
2,401,729	-		PFR28_02091	0.60	-0.9
2,401,729	-		PFR28_02091	0.60	-0.5
2,401,729	-		PFR28_02091	0.60	-0.9
2,401,729	-		PFR28_02091	0.60	-0.7
2,401,731	+		PFR28_02091	0.60	-2.0
2,401,731	+		PFR28_02091	0.60	-0.9
2,401,732	-		PFR28_02091	0.60	+0.8
2,401,863	+		PFR28_02091	0.68	-1.2
2,401,864	-		PFR28_02091	0.68	-1.5
2,401,864	-		PFR28_02091	0.68	+0.1
2,401,888	+		PFR28_02091	0.70	-1.1
2,401,888	+		PFR28_02091	0.70	+0.3
2,401,889	-		PFR28_02091	0.70	+0.6
2,401,889	-		PFR28_02091	0.70	-2.1
2,401,889	-		PFR28_02091	0.70	-0.2
2,401,889	-		PFR28_02091	0.70	-1.8
2,402,025	+		PFR28_02091	0.78	+1.1
2,402,025	+		PFR28_02091	0.78	-0.2
2,402,026	-		PFR28_02091	0.78	-0.6
2,402,051	+		PFR28_02091	0.80	-1.1
2,402,051	+		PFR28_02091	0.80	-1.5
2,402,051	+		PFR28_02091	0.80	-1.5
2,402,051	+		PFR28_02091	0.80	-1.7
2,402,052	-		PFR28_02091	0.80	-0.4
2,402,052	-		PFR28_02091	0.80	-0.3
2,402,134	-		PFR28_02091	0.85	-2.6
2,402,154	+		PFR28_02091	0.86	-2.9
2,402,154	+		PFR28_02091	0.86	-0.7
2,402,154	+		PFR28_02091	0.86	-0.5
2,402,154	+		PFR28_02091	0.86	-1.0
2,402,155	-		PFR28_02091	0.86	+0.1
2,402,155	-		PFR28_02091	0.86	-0.2
2,402,208	+		PFR28_02091	0.89	-2.0
2,402,209	-		PFR28_02091	0.89	-1.0
2,402,277	+				-1.5
2,402,277	+				-0.7
2,402,277	+				-1.0
2,402,278	-				-0.8
2,402,278	-				-0.8
2,402,376	+				-1.1
2,402,376	+				+0.5
2,402,376	+				-0.9
2,402,376	+				-0.9
2,402,376	+				-0.3
2,402,382	+				+0.7
2,402,382	+				+0.9
2,402,383	-				-0.4
2,402,383	-				-1.0
2,402,422	+				+1.9
2,402,422	+				-0.4
2,402,423	-				-1.0
2,402,438	-				-2.4
2,402,530	+		PFR28_02092	0.17	-2.6
2,402,745	+		PFR28_02092	0.46	-0.5
2,402,745	+		PFR28_02092	0.46	+2.1
2,402,746	-		PFR28_02092	0.46	-0.6
2,402,746	-		PFR28_02092	0.46	-2.7
2,402,825	-		PFR28_02092	0.57	+0.7
2,402,989	+		PFR28_02092	0.80	-0.7
2,402,989	+		PFR28_02092	0.80	-2.6
2,402,989	+		PFR28_02092	0.80	-0.5
2,402,989	+		PFR28_02092	0.80	+0.2
2,402,989	+		PFR28_02092	0.80	-2.4
2,402,990	-		PFR28_02092	0.80	-1.7
2,402,990	-		PFR28_02092	0.80	-1.0
2,402,990	-		PFR28_02092	0.80	+0.5
2,402,990	-		PFR28_02092	0.80	-0.9
2,402,990	-		PFR28_02092	0.80	-0.2
2,402,990	-		PFR28_02092	0.80	+0.5
2,402,990	-		PFR28_02092	0.80	-0.1
2,403,243	-				-0.0
2,403,327	+				-0.9
2,403,327	+				+0.3
2,403,327	+				-0.5
2,403,359	+				+0.5
2,403,359	+				-0.4
2,403,359	+				-1.8