Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00523 and PFR28_00524 overlap by 53 nucleotides PFR28_00524 and PFR28_00525 are separated by 171 nucleotides PFR28_00525 and PFR28_00526 are separated by 252 nucleotides
PFR28_00523: PFR28_00523 - 'Pyridoxine/pyridoxamine 5'-phosphate oxidase' transl_table=11, at 558,324 to 558,971
_00523
PFR28_00524: PFR28_00524 - hypothetical protein, at 558,919 to 559,203
_00524
PFR28_00525: PFR28_00525 - Outer membrane lipoprotein SlyB, at 559,375 to 559,839
_00525
PFR28_00526: PFR28_00526 - Na(+)/H(+) antiporter NhaA, at 560,092 to 561,276
_00526
Position (kb) 559
560 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 559.067 kb on + strand, within PFR28_00524 at 559.067 kb on + strand, within PFR28_00524 at 559.067 kb on + strand, within PFR28_00524 at 559.067 kb on + strand, within PFR28_00524 at 559.067 kb on + strand, within PFR28_00524 at 559.068 kb on - strand, within PFR28_00524 at 559.068 kb on - strand, within PFR28_00524 at 559.068 kb on - strand, within PFR28_00524 at 559.068 kb on - strand, within PFR28_00524 at 559.068 kb on - strand, within PFR28_00524 at 559.068 kb on - strand, within PFR28_00524 at 559.068 kb on - strand, within PFR28_00524 at 559.120 kb on + strand, within PFR28_00524 at 559.120 kb on + strand, within PFR28_00524 at 559.121 kb on - strand, within PFR28_00524 at 559.121 kb on - strand, within PFR28_00524 at 559.121 kb on - strand, within PFR28_00524 at 559.121 kb on - strand, within PFR28_00524 at 559.139 kb on - strand, within PFR28_00524 at 559.139 kb on - strand, within PFR28_00524 at 559.142 kb on + strand, within PFR28_00524 at 559.142 kb on + strand, within PFR28_00524 at 559.142 kb on + strand, within PFR28_00524 at 559.143 kb on - strand, within PFR28_00524 at 559.143 kb on - strand, within PFR28_00524 at 559.143 kb on - strand, within PFR28_00524 at 559.160 kb on + strand, within PFR28_00524 at 559.160 kb on + strand, within PFR28_00524 at 559.160 kb on + strand, within PFR28_00524 at 559.160 kb on + strand, within PFR28_00524 at 559.161 kb on - strand, within PFR28_00524 at 559.161 kb on - strand, within PFR28_00524 at 559.196 kb on + strand at 559.197 kb on - strand at 559.197 kb on - strand at 559.197 kb on - strand at 559.197 kb on - strand at 559.197 kb on - strand at 559.197 kb on - strand at 559.270 kb on + strand at 559.271 kb on - strand at 559.304 kb on - strand at 559.343 kb on + strand at 559.344 kb on - strand at 559.350 kb on + strand at 559.350 kb on + strand at 559.350 kb on + strand at 559.350 kb on + strand at 559.351 kb on - strand at 559.351 kb on - strand at 559.351 kb on - strand at 559.351 kb on - strand at 559.351 kb on - strand at 559.351 kb on - strand at 559.374 kb on + strand at 559.374 kb on + strand at 559.374 kb on + strand at 559.375 kb on - strand at 559.375 kb on - strand at 559.375 kb on - strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.380 kb on + strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.381 kb on - strand at 559.463 kb on - strand, within PFR28_00525 at 559.463 kb on - strand, within PFR28_00525 at 559.463 kb on - strand, within PFR28_00525 at 559.624 kb on - strand, within PFR28_00525 at 559.735 kb on - strand, within PFR28_00525 at 559.747 kb on + strand, within PFR28_00525 at 559.748 kb on - strand, within PFR28_00525 at 559.748 kb on - strand, within PFR28_00525 at 559.775 kb on + strand, within PFR28_00525 at 559.775 kb on + strand, within PFR28_00525 at 559.775 kb on + strand, within PFR28_00525 at 559.838 kb on - strand at 559.838 kb on - strand at 559.890 kb on + strand at 559.891 kb on - strand at 559.985 kb on + strand at 559.986 kb on - strand at 560.052 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 559,067 + PFR28_00524 0.52 -0.5 559,067 + PFR28_00524 0.52 -1.3 559,067 + PFR28_00524 0.52 +0.8 559,067 + PFR28_00524 0.52 -0.7 559,067 + PFR28_00524 0.52 +0.7 559,068 - PFR28_00524 0.52 -0.8 559,068 - PFR28_00524 0.52 +0.0 559,068 - PFR28_00524 0.52 +2.0 559,068 - PFR28_00524 0.52 +0.8 559,068 - PFR28_00524 0.52 -2.1 559,068 - PFR28_00524 0.52 +1.2 559,068 - PFR28_00524 0.52 -1.5 559,120 + PFR28_00524 0.71 -0.3 559,120 + PFR28_00524 0.71 -1.3 559,121 - PFR28_00524 0.71 +0.1 559,121 - PFR28_00524 0.71 +0.8 559,121 - PFR28_00524 0.71 -0.6 559,121 - PFR28_00524 0.71 -0.7 559,139 - PFR28_00524 0.77 +2.3 559,139 - PFR28_00524 0.77 -0.0 559,142 + PFR28_00524 0.78 +0.3 559,142 + PFR28_00524 0.78 -0.6 559,142 + PFR28_00524 0.78 -0.2 559,143 - PFR28_00524 0.79 -0.2 559,143 - PFR28_00524 0.79 -0.4 559,143 - PFR28_00524 0.79 -0.6 559,160 + PFR28_00524 0.85 -0.2 559,160 + PFR28_00524 0.85 +1.1 559,160 + PFR28_00524 0.85 +2.9 559,160 + PFR28_00524 0.85 +0.9 559,161 - PFR28_00524 0.85 -0.2 559,161 - PFR28_00524 0.85 -3.3 559,196 + +0.1 559,197 - -0.5 559,197 - +0.2 559,197 - +0.7 559,197 - -0.8 559,197 - +0.2 559,197 - -1.2 559,270 + -0.1 559,271 - -0.1 559,304 - -1.6 559,343 + +0.3 559,344 - -0.6 559,350 + -1.8 559,350 + -1.0 559,350 + +0.8 559,350 + +0.2 559,351 - +0.2 559,351 - -1.1 559,351 - -0.4 559,351 - -2.6 559,351 - -0.8 559,351 - -0.3 559,374 + -1.0 559,374 + +0.1 559,374 + -0.5 559,375 - -1.7 559,375 - +0.7 559,375 - +0.2 559,380 + +0.2 559,380 + +0.3 559,380 + -0.7 559,380 + -0.2 559,380 + -0.1 559,380 + -2.2 559,380 + -1.1 559,380 + -3.1 559,380 + -0.1 559,380 + -1.0 559,380 + +0.3 559,380 + +0.4 559,380 + -0.2 559,380 + -0.8 559,380 + -1.9 559,380 + -0.5 559,380 + -1.1 559,380 + -1.3 559,381 - +0.2 559,381 - -1.7 559,381 - -1.2 559,381 - -1.5 559,381 - -0.9 559,381 - +0.0 559,381 - -0.4 559,381 - -1.2 559,381 - -0.2 559,381 - +0.1 559,381 - -1.5 559,381 - -1.4 559,381 - -3.0 559,381 - +0.0 559,381 - -0.9 559,381 - -1.3 559,381 - -0.3 559,463 - PFR28_00525 0.19 -0.8 559,463 - PFR28_00525 0.19 -1.6 559,463 - PFR28_00525 0.19 -0.2 559,624 - PFR28_00525 0.54 -0.3 559,735 - PFR28_00525 0.77 -0.3 559,747 + PFR28_00525 0.80 -1.7 559,748 - PFR28_00525 0.80 +1.3 559,748 - PFR28_00525 0.80 -0.2 559,775 + PFR28_00525 0.86 -0.5 559,775 + PFR28_00525 0.86 -1.1 559,775 + PFR28_00525 0.86 -0.7 559,838 - -0.7 559,838 - -1.8 559,890 + -0.3 559,891 - -0.2 559,985 + -0.4 559,986 - -0.2 560,052 - +0.6
Or see this region's nucleotide sequence