Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS24045 and ABIE41_RS24050 are separated by 11 nucleotides ABIE41_RS24050 and ABIE41_RS24055 are separated by 5 nucleotides ABIE41_RS24055 and ABIE41_RS24060 are separated by 164 nucleotides
ABIE41_RS24045: ABIE41_RS24045 - FAD-dependent oxidoreductase, at 4,965,276 to 4,966,721
_RS24045
ABIE41_RS24050: ABIE41_RS24050 - HAMP domain-containing sensor histidine kinase, at 4,966,733 to 4,968,190
_RS24050
ABIE41_RS24055: ABIE41_RS24055 - helix-turn-helix transcriptional regulator, at 4,968,196 to 4,968,825
_RS24055
ABIE41_RS24060: ABIE41_RS24060 - DUF952 domain-containing protein, at 4,968,990 to 4,969,334
_RS24060
Position (kb) 4966
4967
4968
4969 Strain fitness (log2 ratio) -1
0
1
2 at 4966.203 kb on + strand, within ABIE41_RS24045 at 4966.203 kb on + strand, within ABIE41_RS24045 at 4966.204 kb on + strand, within ABIE41_RS24045 at 4966.204 kb on - strand, within ABIE41_RS24045 at 4966.422 kb on + strand, within ABIE41_RS24045 at 4966.422 kb on + strand, within ABIE41_RS24045 at 4966.423 kb on - strand, within ABIE41_RS24045 at 4966.423 kb on - strand, within ABIE41_RS24045 at 4966.862 kb on + strand at 4966.863 kb on - strand at 4966.863 kb on - strand at 4966.863 kb on - strand at 4966.863 kb on - strand at 4967.315 kb on + strand, within ABIE41_RS24050 at 4967.315 kb on + strand, within ABIE41_RS24050 at 4967.315 kb on + strand, within ABIE41_RS24050 at 4967.316 kb on - strand, within ABIE41_RS24050 at 4967.316 kb on - strand, within ABIE41_RS24050 at 4967.316 kb on - strand, within ABIE41_RS24050 at 4967.316 kb on - strand, within ABIE41_RS24050 at 4967.667 kb on - strand, within ABIE41_RS24050 at 4967.690 kb on + strand, within ABIE41_RS24050 at 4967.690 kb on + strand, within ABIE41_RS24050 at 4967.691 kb on - strand, within ABIE41_RS24050 at 4967.691 kb on - strand, within ABIE41_RS24050 at 4968.455 kb on + strand, within ABIE41_RS24055 at 4969.002 kb on + strand at 4969.003 kb on - strand at 4969.003 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 4,966,203 + ABIE41_RS24045 0.64 -0.3 4,966,203 + ABIE41_RS24045 0.64 +2.6 4,966,204 + ABIE41_RS24045 0.64 +0.3 4,966,204 - ABIE41_RS24045 0.64 -0.9 4,966,422 + ABIE41_RS24045 0.79 -0.2 4,966,422 + ABIE41_RS24045 0.79 -0.4 4,966,423 - ABIE41_RS24045 0.79 -0.6 4,966,423 - ABIE41_RS24045 0.79 -0.2 4,966,862 + +1.3 4,966,863 - -0.2 4,966,863 - -0.9 4,966,863 - -0.5 4,966,863 - +0.8 4,967,315 + ABIE41_RS24050 0.40 -0.7 4,967,315 + ABIE41_RS24050 0.40 -0.3 4,967,315 + ABIE41_RS24050 0.40 -1.6 4,967,316 - ABIE41_RS24050 0.40 -1.0 4,967,316 - ABIE41_RS24050 0.40 -0.0 4,967,316 - ABIE41_RS24050 0.40 +1.6 4,967,316 - ABIE41_RS24050 0.40 -0.3 4,967,667 - ABIE41_RS24050 0.64 +0.0 4,967,690 + ABIE41_RS24050 0.66 -1.3 4,967,690 + ABIE41_RS24050 0.66 -0.3 4,967,691 - ABIE41_RS24050 0.66 +0.6 4,967,691 - ABIE41_RS24050 0.66 -0.6 4,968,455 + ABIE41_RS24055 0.41 -1.7 4,969,002 + +0.7 4,969,003 - -1.1 4,969,003 - +0.2
Or see this region's nucleotide sequence