Strain Fitness in Bosea sp. OAE506 around ABIE41_RS23265

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS23260 and ABIE41_RS23265 are separated by 327 nucleotidesABIE41_RS23265 and ABIE41_RS23270 are separated by 104 nucleotidesABIE41_RS23270 and ABIE41_RS23275 are separated by 265 nucleotides ABIE41_RS23260: ABIE41_RS23260 - isoleucine--tRNA ligase, at 4,785,321 to 4,788,293 _RS23260 ABIE41_RS23265: ABIE41_RS23265 - bifunctional riboflavin kinase/FAD synthetase, at 4,788,621 to 4,789,589 _RS23265 ABIE41_RS23270: ABIE41_RS23270 - MaoC family dehydratase, at 4,789,694 to 4,790,137 _RS23270 ABIE41_RS23275: ABIE41_RS23275 - response regulator, at 4,790,403 to 4,790,786 _RS23275 Position (kb) 4788 4789 4790Strain fitness (log2 ratio) -1 0 1at 4788.434 kb on - strandat 4788.434 kb on - strandat 4788.518 kb on + strandat 4788.519 kb on - strandat 4788.608 kb on + strandat 4788.609 kb on - strandat 4788.609 kb on - strandat 4788.609 kb on - strandat 4789.884 kb on + strand, within ABIE41_RS23270at 4789.884 kb on + strand, within ABIE41_RS23270at 4789.885 kb on - strand, within ABIE41_RS23270at 4789.885 kb on - strand, within ABIE41_RS23270at 4789.978 kb on + strand, within ABIE41_RS23270at 4789.978 kb on + strand, within ABIE41_RS23270at 4789.979 kb on - strand, within ABIE41_RS23270at 4789.979 kb on - strand, within ABIE41_RS23270at 4790.119 kb on + strandat 4790.120 kb on - strandat 4790.121 kb on + strandat 4790.121 kb on + strandat 4790.121 kb on + strandat 4790.122 kb on - strandat 4790.122 kb on - strandat 4790.292 kb on - strandat 4790.316 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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4,788,434 - +0.2
4,788,434 - -1.7
4,788,518 + +0.8
4,788,519 - +0.0
4,788,608 + -1.1
4,788,609 - +0.8
4,788,609 - -0.1
4,788,609 - +0.3
4,789,884 + ABIE41_RS23270 0.43 -0.3
4,789,884 + ABIE41_RS23270 0.43 +0.0
4,789,885 - ABIE41_RS23270 0.43 +1.1
4,789,885 - ABIE41_RS23270 0.43 +0.0
4,789,978 + ABIE41_RS23270 0.64 +0.1
4,789,978 + ABIE41_RS23270 0.64 -0.6
4,789,979 - ABIE41_RS23270 0.64 -1.4
4,789,979 - ABIE41_RS23270 0.64 +1.3
4,790,119 + +0.4
4,790,120 - +0.3
4,790,121 + +0.0
4,790,121 + +0.5
4,790,121 + -0.7
4,790,122 - +0.4
4,790,122 - -0.0
4,790,292 - +0.4
4,790,316 + -0.6

Or see this region's nucleotide sequence