Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS22820 and ABIE41_RS22825 are separated by 132 nucleotides ABIE41_RS22825 and ABIE41_RS22830 are separated by 128 nucleotides ABIE41_RS22830 and ABIE41_RS22835 are separated by 145 nucleotides
ABIE41_RS22820: ABIE41_RS22820 - tripartite tricarboxylate transporter substrate binding protein, at 4,700,113 to 4,701,018
_RS22820
ABIE41_RS22825: ABIE41_RS22825 - fumarylacetoacetate hydrolase family protein, at 4,701,151 to 4,702,038
_RS22825
ABIE41_RS22830: ABIE41_RS22830 - FCD domain-containing protein, at 4,702,167 to 4,702,841
_RS22830
ABIE41_RS22835: ABIE41_RS22835 - GFA family protein, at 4,702,987 to 4,703,385
_RS22835
Position (kb) 4701
4702
4703 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4700.202 kb on + strand at 4700.202 kb on + strand at 4700.203 kb on - strand at 4700.203 kb on - strand at 4700.205 kb on - strand, within ABIE41_RS22820 at 4700.349 kb on - strand, within ABIE41_RS22820 at 4700.349 kb on - strand, within ABIE41_RS22820 at 4700.349 kb on - strand, within ABIE41_RS22820 at 4700.594 kb on + strand, within ABIE41_RS22820 at 4700.594 kb on + strand, within ABIE41_RS22820 at 4700.595 kb on - strand, within ABIE41_RS22820 at 4700.595 kb on - strand, within ABIE41_RS22820 at 4700.621 kb on + strand, within ABIE41_RS22820 at 4700.621 kb on + strand, within ABIE41_RS22820 at 4700.621 kb on + strand, within ABIE41_RS22820 at 4700.622 kb on - strand, within ABIE41_RS22820 at 4700.622 kb on - strand, within ABIE41_RS22820 at 4700.622 kb on - strand, within ABIE41_RS22820 at 4700.622 kb on - strand, within ABIE41_RS22820 at 4700.658 kb on + strand, within ABIE41_RS22820 at 4700.658 kb on + strand, within ABIE41_RS22820 at 4700.658 kb on + strand, within ABIE41_RS22820 at 4700.759 kb on + strand, within ABIE41_RS22820 at 4700.759 kb on + strand, within ABIE41_RS22820 at 4700.759 kb on + strand, within ABIE41_RS22820 at 4700.759 kb on + strand, within ABIE41_RS22820 at 4700.760 kb on - strand, within ABIE41_RS22820 at 4700.822 kb on + strand, within ABIE41_RS22820 at 4700.822 kb on + strand, within ABIE41_RS22820 at 4700.823 kb on - strand, within ABIE41_RS22820 at 4700.945 kb on + strand at 4700.945 kb on + strand at 4700.945 kb on + strand at 4700.946 kb on - strand at 4701.005 kb on + strand at 4701.019 kb on - strand at 4701.299 kb on + strand, within ABIE41_RS22825 at 4701.299 kb on + strand, within ABIE41_RS22825 at 4701.299 kb on + strand, within ABIE41_RS22825 at 4701.300 kb on - strand, within ABIE41_RS22825 at 4701.387 kb on + strand, within ABIE41_RS22825 at 4701.388 kb on - strand, within ABIE41_RS22825 at 4701.388 kb on - strand, within ABIE41_RS22825 at 4701.388 kb on - strand, within ABIE41_RS22825 at 4701.388 kb on - strand, within ABIE41_RS22825 at 4701.388 kb on - strand, within ABIE41_RS22825 at 4701.388 kb on - strand, within ABIE41_RS22825 at 4701.617 kb on + strand, within ABIE41_RS22825 at 4701.618 kb on - strand, within ABIE41_RS22825 at 4701.776 kb on + strand, within ABIE41_RS22825 at 4701.777 kb on - strand, within ABIE41_RS22825 at 4701.777 kb on - strand, within ABIE41_RS22825 at 4701.777 kb on - strand, within ABIE41_RS22825 at 4702.283 kb on - strand, within ABIE41_RS22830 at 4702.304 kb on + strand, within ABIE41_RS22830 at 4702.366 kb on + strand, within ABIE41_RS22830 at 4702.366 kb on + strand, within ABIE41_RS22830 at 4702.367 kb on - strand, within ABIE41_RS22830 at 4702.367 kb on - strand, within ABIE41_RS22830 at 4702.388 kb on + strand, within ABIE41_RS22830 at 4702.389 kb on - strand, within ABIE41_RS22830 at 4702.636 kb on + strand, within ABIE41_RS22830 at 4702.636 kb on + strand, within ABIE41_RS22830 at 4702.636 kb on + strand, within ABIE41_RS22830 at 4702.636 kb on + strand, within ABIE41_RS22830 at 4702.637 kb on - strand, within ABIE41_RS22830 at 4702.637 kb on - strand, within ABIE41_RS22830 at 4702.637 kb on - strand, within ABIE41_RS22830 at 4702.637 kb on - strand, within ABIE41_RS22830 at 4702.637 kb on - strand, within ABIE41_RS22830 at 4702.637 kb on - strand, within ABIE41_RS22830 at 4702.772 kb on - strand, within ABIE41_RS22830 at 4702.772 kb on - strand, within ABIE41_RS22830 at 4702.801 kb on + strand at 4702.801 kb on + strand at 4702.801 kb on + strand at 4702.802 kb on - strand at 4702.802 kb on - strand at 4702.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 4,700,202 + +0.5 4,700,202 + +0.2 4,700,203 - -0.2 4,700,203 - +0.5 4,700,205 - ABIE41_RS22820 0.10 +0.4 4,700,349 - ABIE41_RS22820 0.26 -1.3 4,700,349 - ABIE41_RS22820 0.26 -0.5 4,700,349 - ABIE41_RS22820 0.26 -0.8 4,700,594 + ABIE41_RS22820 0.53 +0.1 4,700,594 + ABIE41_RS22820 0.53 +0.4 4,700,595 - ABIE41_RS22820 0.53 +0.0 4,700,595 - ABIE41_RS22820 0.53 -0.4 4,700,621 + ABIE41_RS22820 0.56 +1.6 4,700,621 + ABIE41_RS22820 0.56 +0.2 4,700,621 + ABIE41_RS22820 0.56 +0.9 4,700,622 - ABIE41_RS22820 0.56 -0.5 4,700,622 - ABIE41_RS22820 0.56 +0.8 4,700,622 - ABIE41_RS22820 0.56 +0.2 4,700,622 - ABIE41_RS22820 0.56 -0.1 4,700,658 + ABIE41_RS22820 0.60 -0.8 4,700,658 + ABIE41_RS22820 0.60 -0.8 4,700,658 + ABIE41_RS22820 0.60 +0.2 4,700,759 + ABIE41_RS22820 0.71 +1.8 4,700,759 + ABIE41_RS22820 0.71 +0.6 4,700,759 + ABIE41_RS22820 0.71 -0.0 4,700,759 + ABIE41_RS22820 0.71 +0.0 4,700,760 - ABIE41_RS22820 0.71 +0.2 4,700,822 + ABIE41_RS22820 0.78 +0.1 4,700,822 + ABIE41_RS22820 0.78 +2.4 4,700,823 - ABIE41_RS22820 0.78 -1.2 4,700,945 + -0.6 4,700,945 + -1.0 4,700,945 + -0.8 4,700,946 - +0.2 4,701,005 + +0.1 4,701,019 - +0.0 4,701,299 + ABIE41_RS22825 0.17 +1.1 4,701,299 + ABIE41_RS22825 0.17 +0.2 4,701,299 + ABIE41_RS22825 0.17 +0.1 4,701,300 - ABIE41_RS22825 0.17 +0.0 4,701,387 + ABIE41_RS22825 0.27 +0.3 4,701,388 - ABIE41_RS22825 0.27 +1.4 4,701,388 - ABIE41_RS22825 0.27 -0.1 4,701,388 - ABIE41_RS22825 0.27 +3.4 4,701,388 - ABIE41_RS22825 0.27 -0.1 4,701,388 - ABIE41_RS22825 0.27 +1.4 4,701,388 - ABIE41_RS22825 0.27 -0.4 4,701,617 + ABIE41_RS22825 0.52 +1.5 4,701,618 - ABIE41_RS22825 0.53 +0.4 4,701,776 + ABIE41_RS22825 0.70 +1.1 4,701,777 - ABIE41_RS22825 0.70 -0.8 4,701,777 - ABIE41_RS22825 0.70 +1.1 4,701,777 - ABIE41_RS22825 0.70 +0.6 4,702,283 - ABIE41_RS22830 0.17 +1.3 4,702,304 + ABIE41_RS22830 0.20 +1.2 4,702,366 + ABIE41_RS22830 0.29 +0.1 4,702,366 + ABIE41_RS22830 0.29 -2.8 4,702,367 - ABIE41_RS22830 0.30 +0.1 4,702,367 - ABIE41_RS22830 0.30 +0.2 4,702,388 + ABIE41_RS22830 0.33 +0.8 4,702,389 - ABIE41_RS22830 0.33 -0.2 4,702,636 + ABIE41_RS22830 0.69 -0.0 4,702,636 + ABIE41_RS22830 0.69 +0.3 4,702,636 + ABIE41_RS22830 0.69 -0.8 4,702,636 + ABIE41_RS22830 0.69 -0.5 4,702,637 - ABIE41_RS22830 0.70 +2.1 4,702,637 - ABIE41_RS22830 0.70 -1.1 4,702,637 - ABIE41_RS22830 0.70 +1.4 4,702,637 - ABIE41_RS22830 0.70 +0.1 4,702,637 - ABIE41_RS22830 0.70 +1.8 4,702,637 - ABIE41_RS22830 0.70 -2.3 4,702,772 - ABIE41_RS22830 0.90 +0.7 4,702,772 - ABIE41_RS22830 0.90 -0.1 4,702,801 + -1.7 4,702,801 + -0.5 4,702,801 + -0.5 4,702,802 - -1.6 4,702,802 - -0.3 4,702,879 + -0.2
Or see this region's nucleotide sequence