Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS22415 and ABIE41_RS22420 are separated by 32 nucleotides ABIE41_RS22420 and ABIE41_RS22425 are separated by 143 nucleotides ABIE41_RS22425 and ABIE41_RS22430 are separated by 19 nucleotides ABIE41_RS22430 and ABIE41_RS22435 are separated by 31 nucleotides
ABIE41_RS22415: ABIE41_RS22415 - hypothetical protein, at 4,615,591 to 4,616,358
_RS22415
ABIE41_RS22420: ABIE41_RS22420 - hypothetical protein, at 4,616,391 to 4,616,621
_RS22420
ABIE41_RS22425: ABIE41_RS22425 - DUF2336 domain-containing protein, at 4,616,765 to 4,617,898
_RS22425
ABIE41_RS22430: ABIE41_RS22430 - DUF1491 family protein, at 4,617,918 to 4,618,253
_RS22430
ABIE41_RS22435: ABIE41_RS22435 - hypothetical protein, at 4,618,285 to 4,618,899
_RS22435
Position (kb) 4616
4617
4618 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4615.782 kb on - strand, within ABIE41_RS22415 at 4615.787 kb on + strand, within ABIE41_RS22415 at 4615.787 kb on + strand, within ABIE41_RS22415 at 4615.787 kb on + strand, within ABIE41_RS22415 at 4615.788 kb on - strand, within ABIE41_RS22415 at 4615.788 kb on - strand, within ABIE41_RS22415 at 4615.788 kb on - strand, within ABIE41_RS22415 at 4615.788 kb on - strand, within ABIE41_RS22415 at 4616.009 kb on + strand, within ABIE41_RS22415 at 4616.009 kb on + strand, within ABIE41_RS22415 at 4616.010 kb on - strand, within ABIE41_RS22415 at 4616.203 kb on - strand, within ABIE41_RS22415 at 4616.516 kb on - strand, within ABIE41_RS22420 at 4616.711 kb on + strand at 4616.727 kb on - strand at 4617.171 kb on + strand, within ABIE41_RS22425 at 4617.172 kb on - strand, within ABIE41_RS22425 at 4617.912 kb on + strand at 4617.912 kb on + strand at 4617.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 4,615,782 - ABIE41_RS22415 0.25 +0.1 4,615,787 + ABIE41_RS22415 0.26 +1.6 4,615,787 + ABIE41_RS22415 0.26 +0.2 4,615,787 + ABIE41_RS22415 0.26 +3.8 4,615,788 - ABIE41_RS22415 0.26 -1.0 4,615,788 - ABIE41_RS22415 0.26 +1.8 4,615,788 - ABIE41_RS22415 0.26 +0.3 4,615,788 - ABIE41_RS22415 0.26 +0.5 4,616,009 + ABIE41_RS22415 0.54 -0.3 4,616,009 + ABIE41_RS22415 0.54 -1.6 4,616,010 - ABIE41_RS22415 0.55 -1.5 4,616,203 - ABIE41_RS22415 0.80 +0.2 4,616,516 - ABIE41_RS22420 0.54 +1.4 4,616,711 + -1.8 4,616,727 - -0.9 4,617,171 + ABIE41_RS22425 0.36 +0.2 4,617,172 - ABIE41_RS22425 0.36 -0.5 4,617,912 + +0.0 4,617,912 + +0.3 4,617,913 - +1.0
Or see this region's nucleotide sequence