Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21930 and ABIE41_RS21935 are separated by 42 nucleotides ABIE41_RS21935 and ABIE41_RS21940 are separated by 1 nucleotides ABIE41_RS21940 and ABIE41_RS21945 are separated by 61 nucleotides ABIE41_RS21945 and ABIE41_RS21950 are separated by 87 nucleotides
ABIE41_RS21930: ABIE41_RS21930 - creatininase family protein, at 4,508,564 to 4,509,367
_RS21930
ABIE41_RS21935: ABIE41_RS21935 - helix-turn-helix domain-containing protein, at 4,509,410 to 4,509,700
_RS21935
ABIE41_RS21940: ABIE41_RS21940 - type II toxin-antitoxin system RelE/ParE family toxin, at 4,509,702 to 4,510,058
_RS21940
ABIE41_RS21945: ABIE41_RS21945 - malonyl-CoA synthase, at 4,510,120 to 4,511,667
_RS21945
ABIE41_RS21950: ABIE41_RS21950 - malonyl-CoA decarboxylase, at 4,511,755 to 4,513,083
_RS21950
Position (kb) 4510
4511
4512 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4509.148 kb on + strand, within ABIE41_RS21930 at 4509.164 kb on + strand, within ABIE41_RS21930 at 4509.165 kb on - strand, within ABIE41_RS21930 at 4509.350 kb on + strand at 4509.350 kb on + strand at 4509.350 kb on + strand at 4509.350 kb on + strand at 4509.350 kb on + strand at 4509.350 kb on + strand at 4509.350 kb on + strand at 4509.351 kb on - strand at 4509.351 kb on - strand at 4509.351 kb on - strand at 4509.408 kb on + strand at 4509.408 kb on + strand at 4509.409 kb on - strand at 4509.409 kb on - strand at 4509.856 kb on + strand, within ABIE41_RS21940 at 4509.857 kb on - strand, within ABIE41_RS21940 at 4509.857 kb on - strand, within ABIE41_RS21940 at 4510.104 kb on + strand at 4510.148 kb on + strand at 4510.148 kb on + strand at 4510.148 kb on + strand at 4510.148 kb on + strand at 4510.148 kb on + strand at 4510.148 kb on + strand at 4510.149 kb on - strand at 4510.149 kb on - strand at 4510.149 kb on - strand at 4510.149 kb on - strand at 4510.149 kb on - strand at 4510.149 kb on - strand at 4510.149 kb on - strand at 4510.160 kb on + strand at 4510.161 kb on - strand at 4510.161 kb on - strand at 4510.433 kb on + strand, within ABIE41_RS21945 at 4510.434 kb on - strand, within ABIE41_RS21945 at 4510.434 kb on - strand, within ABIE41_RS21945 at 4510.434 kb on - strand, within ABIE41_RS21945 at 4510.481 kb on + strand, within ABIE41_RS21945 at 4510.571 kb on + strand, within ABIE41_RS21945 at 4510.716 kb on - strand, within ABIE41_RS21945 at 4510.716 kb on - strand, within ABIE41_RS21945 at 4510.845 kb on + strand, within ABIE41_RS21945 at 4510.845 kb on + strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4511.085 kb on - strand, within ABIE41_RS21945 at 4511.085 kb on - strand, within ABIE41_RS21945 at 4511.085 kb on - strand, within ABIE41_RS21945 at 4511.085 kb on - strand, within ABIE41_RS21945 at 4511.168 kb on + strand, within ABIE41_RS21945 at 4511.169 kb on - strand, within ABIE41_RS21945 at 4511.169 kb on - strand, within ABIE41_RS21945 at 4511.169 kb on - strand, within ABIE41_RS21945 at 4511.406 kb on + strand, within ABIE41_RS21945 at 4511.406 kb on + strand, within ABIE41_RS21945 at 4511.406 kb on + strand, within ABIE41_RS21945 at 4511.407 kb on - strand, within ABIE41_RS21945 at 4511.407 kb on - strand, within ABIE41_RS21945 at 4511.407 kb on - strand, within ABIE41_RS21945 at 4511.408 kb on + strand, within ABIE41_RS21945 at 4511.459 kb on + strand, within ABIE41_RS21945 at 4511.459 kb on - strand, within ABIE41_RS21945 at 4511.576 kb on + strand at 4511.577 kb on - strand at 4511.577 kb on - strand at 4511.577 kb on - strand at 4511.582 kb on + strand at 4511.583 kb on - strand at 4511.688 kb on + strand at 4511.688 kb on + strand at 4511.689 kb on - strand at 4511.859 kb on - strand at 4511.864 kb on + strand at 4511.864 kb on + strand at 4511.864 kb on + strand at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.527 kb on + strand, within ABIE41_RS21950
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 4,509,148 + ABIE41_RS21930 0.73 +0.8 4,509,164 + ABIE41_RS21930 0.75 -0.9 4,509,165 - ABIE41_RS21930 0.75 +0.2 4,509,350 + +0.1 4,509,350 + -0.5 4,509,350 + -0.8 4,509,350 + -0.5 4,509,350 + +0.1 4,509,350 + +0.8 4,509,350 + +1.1 4,509,351 - +1.7 4,509,351 - -0.3 4,509,351 - +0.9 4,509,408 + -1.8 4,509,408 + -1.0 4,509,409 - +0.6 4,509,409 - -2.9 4,509,856 + ABIE41_RS21940 0.43 +0.5 4,509,857 - ABIE41_RS21940 0.43 -2.4 4,509,857 - ABIE41_RS21940 0.43 -0.7 4,510,104 + +0.2 4,510,148 + +0.2 4,510,148 + -0.2 4,510,148 + +0.2 4,510,148 + +1.0 4,510,148 + -0.1 4,510,148 + +0.0 4,510,149 - +3.8 4,510,149 - +1.1 4,510,149 - +1.8 4,510,149 - +1.5 4,510,149 - +0.7 4,510,149 - -0.3 4,510,149 - -0.0 4,510,160 + +0.2 4,510,161 - +0.3 4,510,161 - +1.8 4,510,433 + ABIE41_RS21945 0.20 +0.3 4,510,434 - ABIE41_RS21945 0.20 +0.1 4,510,434 - ABIE41_RS21945 0.20 -2.9 4,510,434 - ABIE41_RS21945 0.20 -0.4 4,510,481 + ABIE41_RS21945 0.23 -0.3 4,510,571 + ABIE41_RS21945 0.29 -0.5 4,510,716 - ABIE41_RS21945 0.39 -0.4 4,510,716 - ABIE41_RS21945 0.39 +0.2 4,510,845 + ABIE41_RS21945 0.47 -0.2 4,510,845 + ABIE41_RS21945 0.47 -0.8 4,510,846 - ABIE41_RS21945 0.47 +0.1 4,510,846 - ABIE41_RS21945 0.47 +0.4 4,510,846 - ABIE41_RS21945 0.47 +1.6 4,510,846 - ABIE41_RS21945 0.47 +0.4 4,510,846 - ABIE41_RS21945 0.47 -1.5 4,510,895 + ABIE41_RS21945 0.50 +0.7 4,510,895 + ABIE41_RS21945 0.50 -0.2 4,510,895 + ABIE41_RS21945 0.50 -2.7 4,510,895 + ABIE41_RS21945 0.50 +0.8 4,510,895 + ABIE41_RS21945 0.50 +0.9 4,510,896 - ABIE41_RS21945 0.50 -0.6 4,510,896 - ABIE41_RS21945 0.50 +0.1 4,510,896 - ABIE41_RS21945 0.50 +1.2 4,510,896 - ABIE41_RS21945 0.50 +1.8 4,510,896 - ABIE41_RS21945 0.50 +1.3 4,510,896 - ABIE41_RS21945 0.50 +0.3 4,510,896 - ABIE41_RS21945 0.50 -0.3 4,511,085 - ABIE41_RS21945 0.62 +1.1 4,511,085 - ABIE41_RS21945 0.62 -0.8 4,511,085 - ABIE41_RS21945 0.62 -0.3 4,511,085 - ABIE41_RS21945 0.62 -0.1 4,511,168 + ABIE41_RS21945 0.68 -0.2 4,511,169 - ABIE41_RS21945 0.68 -0.8 4,511,169 - ABIE41_RS21945 0.68 -1.6 4,511,169 - ABIE41_RS21945 0.68 -0.6 4,511,406 + ABIE41_RS21945 0.83 -0.0 4,511,406 + ABIE41_RS21945 0.83 +0.2 4,511,406 + ABIE41_RS21945 0.83 -0.2 4,511,407 - ABIE41_RS21945 0.83 +1.4 4,511,407 - ABIE41_RS21945 0.83 +1.8 4,511,407 - ABIE41_RS21945 0.83 +0.0 4,511,408 + ABIE41_RS21945 0.83 -1.2 4,511,459 + ABIE41_RS21945 0.86 -0.4 4,511,459 - ABIE41_RS21945 0.86 -1.1 4,511,576 + -0.2 4,511,577 - +0.5 4,511,577 - -0.6 4,511,577 - +0.5 4,511,582 + -0.9 4,511,583 - -0.1 4,511,688 + +1.0 4,511,688 + -2.1 4,511,689 - -0.0 4,511,859 - +0.1 4,511,864 + +0.1 4,511,864 + +0.6 4,511,864 + +1.2 4,512,014 + ABIE41_RS21950 0.19 +0.2 4,512,014 + ABIE41_RS21950 0.19 -0.8 4,512,014 + ABIE41_RS21950 0.19 +0.6 4,512,014 + ABIE41_RS21950 0.19 -1.6 4,512,014 + ABIE41_RS21950 0.19 +0.4 4,512,015 - ABIE41_RS21950 0.20 -0.2 4,512,015 - ABIE41_RS21950 0.20 +0.6 4,512,015 - ABIE41_RS21950 0.20 -0.4 4,512,015 - ABIE41_RS21950 0.20 -0.8 4,512,015 - ABIE41_RS21950 0.20 +0.6 4,512,015 - ABIE41_RS21950 0.20 -2.4 4,512,015 - ABIE41_RS21950 0.20 +0.5 4,512,015 - ABIE41_RS21950 0.20 -0.8 4,512,015 - ABIE41_RS21950 0.20 -2.1 4,512,015 - ABIE41_RS21950 0.20 -0.1 4,512,015 - ABIE41_RS21950 0.20 +1.1 4,512,015 - ABIE41_RS21950 0.20 -0.5 4,512,015 - ABIE41_RS21950 0.20 +2.1 4,512,015 - ABIE41_RS21950 0.20 +0.0 4,512,015 - ABIE41_RS21950 0.20 +1.3 4,512,308 + ABIE41_RS21950 0.42 +0.2 4,512,308 + ABIE41_RS21950 0.42 -1.2 4,512,308 + ABIE41_RS21950 0.42 -0.5 4,512,308 + ABIE41_RS21950 0.42 -0.5 4,512,308 + ABIE41_RS21950 0.42 +0.3 4,512,308 + ABIE41_RS21950 0.42 +0.0 4,512,308 + ABIE41_RS21950 0.42 +0.8 4,512,308 + ABIE41_RS21950 0.42 -0.4 4,512,309 - ABIE41_RS21950 0.42 -0.4 4,512,309 - ABIE41_RS21950 0.42 +0.7 4,512,309 - ABIE41_RS21950 0.42 -0.3 4,512,309 - ABIE41_RS21950 0.42 -0.5 4,512,309 - ABIE41_RS21950 0.42 -0.4 4,512,527 + ABIE41_RS21950 0.58 +0.3
Or see this region's nucleotide sequence