Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20335 and ABIE41_RS20340 are separated by 254 nucleotides ABIE41_RS20340 and ABIE41_RS20345 are separated by 386 nucleotides
ABIE41_RS20335: ABIE41_RS20335 - tetratricopeptide repeat protein, at 4,177,404 to 4,178,720
_RS20335
ABIE41_RS20340: ABIE41_RS20340 - AraC family transcriptional regulator, at 4,178,975 to 4,179,883
_RS20340
ABIE41_RS20345: ABIE41_RS20345 - hydantoinase/oxoprolinase family protein, at 4,180,270 to 4,182,327
_RS20345
Position (kb) 4178
4179
4180 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4178.230 kb on + strand, within ABIE41_RS20335 at 4178.231 kb on - strand, within ABIE41_RS20335 at 4178.231 kb on - strand, within ABIE41_RS20335 at 4178.231 kb on - strand, within ABIE41_RS20335 at 4178.236 kb on + strand, within ABIE41_RS20335 at 4178.365 kb on + strand, within ABIE41_RS20335 at 4179.032 kb on + strand at 4179.032 kb on + strand at 4179.032 kb on + strand at 4179.032 kb on + strand at 4179.032 kb on + strand at 4179.032 kb on + strand at 4179.033 kb on - strand at 4179.033 kb on - strand at 4179.048 kb on - strand at 4179.396 kb on - strand, within ABIE41_RS20340 at 4179.406 kb on + strand, within ABIE41_RS20340 at 4179.406 kb on + strand, within ABIE41_RS20340 at 4179.407 kb on - strand, within ABIE41_RS20340 at 4179.407 kb on - strand, within ABIE41_RS20340 at 4179.407 kb on - strand, within ABIE41_RS20340 at 4179.407 kb on - strand, within ABIE41_RS20340 at 4179.407 kb on - strand, within ABIE41_RS20340 at 4179.551 kb on + strand, within ABIE41_RS20340 at 4179.552 kb on - strand, within ABIE41_RS20340 at 4179.584 kb on + strand, within ABIE41_RS20340 at 4179.585 kb on - strand, within ABIE41_RS20340 at 4179.704 kb on + strand, within ABIE41_RS20340 at 4179.704 kb on + strand, within ABIE41_RS20340 at 4179.705 kb on - strand, within ABIE41_RS20340 at 4179.705 kb on - strand, within ABIE41_RS20340 at 4179.705 kb on - strand, within ABIE41_RS20340 at 4179.705 kb on - strand, within ABIE41_RS20340 at 4179.918 kb on + strand at 4179.918 kb on + strand at 4179.919 kb on - strand at 4179.919 kb on - strand at 4180.591 kb on + strand, within ABIE41_RS20345 at 4180.591 kb on + strand, within ABIE41_RS20345 at 4180.591 kb on + strand, within ABIE41_RS20345 at 4180.591 kb on + strand, within ABIE41_RS20345 at 4180.592 kb on - strand, within ABIE41_RS20345 at 4180.592 kb on - strand, within ABIE41_RS20345 at 4180.592 kb on - strand, within ABIE41_RS20345 at 4180.592 kb on - strand, within ABIE41_RS20345
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 4,178,230 + ABIE41_RS20335 0.63 -1.0 4,178,231 - ABIE41_RS20335 0.63 +0.9 4,178,231 - ABIE41_RS20335 0.63 +0.0 4,178,231 - ABIE41_RS20335 0.63 -0.4 4,178,236 + ABIE41_RS20335 0.63 -1.2 4,178,365 + ABIE41_RS20335 0.73 +1.8 4,179,032 + -0.6 4,179,032 + -1.0 4,179,032 + -0.2 4,179,032 + +4.7 4,179,032 + -1.4 4,179,032 + +0.2 4,179,033 - -1.7 4,179,033 - +0.5 4,179,048 - +0.5 4,179,396 - ABIE41_RS20340 0.46 -0.2 4,179,406 + ABIE41_RS20340 0.47 +1.2 4,179,406 + ABIE41_RS20340 0.47 +2.2 4,179,407 - ABIE41_RS20340 0.48 +0.6 4,179,407 - ABIE41_RS20340 0.48 -0.5 4,179,407 - ABIE41_RS20340 0.48 -0.1 4,179,407 - ABIE41_RS20340 0.48 +0.4 4,179,407 - ABIE41_RS20340 0.48 -0.8 4,179,551 + ABIE41_RS20340 0.63 -1.0 4,179,552 - ABIE41_RS20340 0.63 +0.3 4,179,584 + ABIE41_RS20340 0.67 +0.1 4,179,585 - ABIE41_RS20340 0.67 +0.5 4,179,704 + ABIE41_RS20340 0.80 -0.6 4,179,704 + ABIE41_RS20340 0.80 -0.4 4,179,705 - ABIE41_RS20340 0.80 -0.3 4,179,705 - ABIE41_RS20340 0.80 -1.6 4,179,705 - ABIE41_RS20340 0.80 -1.3 4,179,705 - ABIE41_RS20340 0.80 -1.1 4,179,918 + -0.6 4,179,918 + +0.1 4,179,919 - +1.3 4,179,919 - -1.3 4,180,591 + ABIE41_RS20345 0.16 -1.9 4,180,591 + ABIE41_RS20345 0.16 +1.5 4,180,591 + ABIE41_RS20345 0.16 +0.5 4,180,591 + ABIE41_RS20345 0.16 -1.3 4,180,592 - ABIE41_RS20345 0.16 -0.4 4,180,592 - ABIE41_RS20345 0.16 +0.9 4,180,592 - ABIE41_RS20345 0.16 +0.7 4,180,592 - ABIE41_RS20345 0.16 -0.3
Or see this region's nucleotide sequence