Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20330

Experiment: R2A no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS20325 and ABIE41_RS20330 are separated by 39 nucleotidesABIE41_RS20330 and ABIE41_RS20335 are separated by 43 nucleotides ABIE41_RS20325: ABIE41_RS20325 - patatin-like phospholipase family protein, at 4,175,516 to 4,176,685 _RS20325 ABIE41_RS20330: ABIE41_RS20330 - hypothetical protein, at 4,176,725 to 4,177,360 _RS20330 ABIE41_RS20335: ABIE41_RS20335 - tetratricopeptide repeat protein, at 4,177,404 to 4,178,720 _RS20335 Position (kb) 4176 4177 4178Strain fitness (log2 ratio) -2 -1 0 1 2at 4175.755 kb on - strand, within ABIE41_RS20325at 4175.755 kb on - strand, within ABIE41_RS20325at 4175.799 kb on + strand, within ABIE41_RS20325at 4175.926 kb on - strand, within ABIE41_RS20325at 4176.033 kb on + strand, within ABIE41_RS20325at 4176.033 kb on + strand, within ABIE41_RS20325at 4176.045 kb on + strand, within ABIE41_RS20325at 4176.045 kb on + strand, within ABIE41_RS20325at 4176.045 kb on + strand, within ABIE41_RS20325at 4176.045 kb on + strand, within ABIE41_RS20325at 4176.046 kb on - strand, within ABIE41_RS20325at 4176.046 kb on - strand, within ABIE41_RS20325at 4176.046 kb on - strand, within ABIE41_RS20325at 4176.084 kb on + strand, within ABIE41_RS20325at 4176.085 kb on - strand, within ABIE41_RS20325at 4176.183 kb on + strand, within ABIE41_RS20325at 4176.183 kb on + strand, within ABIE41_RS20325at 4176.277 kb on + strand, within ABIE41_RS20325at 4176.277 kb on + strand, within ABIE41_RS20325at 4176.301 kb on - strand, within ABIE41_RS20325at 4176.586 kb on - strandat 4176.586 kb on - strandat 4176.601 kb on - strandat 4176.783 kb on + strandat 4176.808 kb on + strand, within ABIE41_RS20330at 4176.809 kb on - strand, within ABIE41_RS20330at 4176.809 kb on - strand, within ABIE41_RS20330at 4176.809 kb on - strand, within ABIE41_RS20330at 4176.809 kb on - strand, within ABIE41_RS20330at 4176.809 kb on - strand, within ABIE41_RS20330at 4176.810 kb on + strand, within ABIE41_RS20330at 4176.810 kb on + strand, within ABIE41_RS20330at 4176.810 kb on + strand, within ABIE41_RS20330at 4176.810 kb on + strand, within ABIE41_RS20330at 4176.810 kb on + strand, within ABIE41_RS20330at 4176.810 kb on + strand, within ABIE41_RS20330at 4176.811 kb on - strand, within ABIE41_RS20330at 4176.811 kb on - strand, within ABIE41_RS20330at 4176.811 kb on - strand, within ABIE41_RS20330at 4176.811 kb on - strand, within ABIE41_RS20330at 4176.811 kb on - strand, within ABIE41_RS20330at 4176.840 kb on + strand, within ABIE41_RS20330at 4176.840 kb on + strand, within ABIE41_RS20330at 4176.840 kb on + strand, within ABIE41_RS20330at 4176.840 kb on + strand, within ABIE41_RS20330at 4176.841 kb on - strand, within ABIE41_RS20330at 4176.841 kb on - strand, within ABIE41_RS20330at 4177.104 kb on + strand, within ABIE41_RS20330at 4177.105 kb on - strand, within ABIE41_RS20330at 4177.105 kb on - strand, within ABIE41_RS20330at 4177.105 kb on - strand, within ABIE41_RS20330at 4177.105 kb on - strand, within ABIE41_RS20330at 4177.105 kb on - strand, within ABIE41_RS20330at 4177.161 kb on + strand, within ABIE41_RS20330at 4177.162 kb on - strand, within ABIE41_RS20330at 4177.464 kb on + strandat 4177.465 kb on - strandat 4177.507 kb on + strandat 4177.948 kb on + strand, within ABIE41_RS20335at 4177.948 kb on + strand, within ABIE41_RS20335at 4177.949 kb on - strand, within ABIE41_RS20335at 4177.949 kb on - strand, within ABIE41_RS20335at 4177.949 kb on - strand, within ABIE41_RS20335at 4178.230 kb on + strand, within ABIE41_RS20335at 4178.231 kb on - strand, within ABIE41_RS20335at 4178.231 kb on - strand, within ABIE41_RS20335at 4178.231 kb on - strand, within ABIE41_RS20335at 4178.236 kb on + strand, within ABIE41_RS20335

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
remove
4,175,755 - ABIE41_RS20325 0.20 -0.2
4,175,755 - ABIE41_RS20325 0.20 -0.3
4,175,799 + ABIE41_RS20325 0.24 +0.2
4,175,926 - ABIE41_RS20325 0.35 +1.4
4,176,033 + ABIE41_RS20325 0.44 +0.5
4,176,033 + ABIE41_RS20325 0.44 +0.3
4,176,045 + ABIE41_RS20325 0.45 +0.5
4,176,045 + ABIE41_RS20325 0.45 +2.1
4,176,045 + ABIE41_RS20325 0.45 +0.6
4,176,045 + ABIE41_RS20325 0.45 +0.5
4,176,046 - ABIE41_RS20325 0.45 +0.8
4,176,046 - ABIE41_RS20325 0.45 -0.9
4,176,046 - ABIE41_RS20325 0.45 +0.3
4,176,084 + ABIE41_RS20325 0.49 +1.4
4,176,085 - ABIE41_RS20325 0.49 -0.2
4,176,183 + ABIE41_RS20325 0.57 +0.9
4,176,183 + ABIE41_RS20325 0.57 -0.0
4,176,277 + ABIE41_RS20325 0.65 -0.5
4,176,277 + ABIE41_RS20325 0.65 -0.5
4,176,301 - ABIE41_RS20325 0.67 -0.2
4,176,586 - +0.6
4,176,586 - +0.3
4,176,601 - +0.2
4,176,783 + -0.4
4,176,808 + ABIE41_RS20330 0.13 -0.0
4,176,809 - ABIE41_RS20330 0.13 -0.8
4,176,809 - ABIE41_RS20330 0.13 +1.3
4,176,809 - ABIE41_RS20330 0.13 +0.6
4,176,809 - ABIE41_RS20330 0.13 -0.6
4,176,809 - ABIE41_RS20330 0.13 -0.1
4,176,810 + ABIE41_RS20330 0.13 +0.2
4,176,810 + ABIE41_RS20330 0.13 +0.8
4,176,810 + ABIE41_RS20330 0.13 -0.4
4,176,810 + ABIE41_RS20330 0.13 -0.7
4,176,810 + ABIE41_RS20330 0.13 +0.1
4,176,810 + ABIE41_RS20330 0.13 +0.4
4,176,811 - ABIE41_RS20330 0.14 +0.5
4,176,811 - ABIE41_RS20330 0.14 -2.0
4,176,811 - ABIE41_RS20330 0.14 -2.7
4,176,811 - ABIE41_RS20330 0.14 -0.7
4,176,811 - ABIE41_RS20330 0.14 +0.8
4,176,840 + ABIE41_RS20330 0.18 +0.2
4,176,840 + ABIE41_RS20330 0.18 -0.3
4,176,840 + ABIE41_RS20330 0.18 -0.1
4,176,840 + ABIE41_RS20330 0.18 -0.5
4,176,841 - ABIE41_RS20330 0.18 +0.5
4,176,841 - ABIE41_RS20330 0.18 +0.0
4,177,104 + ABIE41_RS20330 0.60 +0.8
4,177,105 - ABIE41_RS20330 0.60 +1.8
4,177,105 - ABIE41_RS20330 0.60 -0.8
4,177,105 - ABIE41_RS20330 0.60 -0.9
4,177,105 - ABIE41_RS20330 0.60 -0.4
4,177,105 - ABIE41_RS20330 0.60 -0.5
4,177,161 + ABIE41_RS20330 0.69 -1.3
4,177,162 - ABIE41_RS20330 0.69 -0.6
4,177,464 + +0.8
4,177,465 - -0.3
4,177,507 + +1.1
4,177,948 + ABIE41_RS20335 0.41 -1.8
4,177,948 + ABIE41_RS20335 0.41 -0.5
4,177,949 - ABIE41_RS20335 0.41 +0.1
4,177,949 - ABIE41_RS20335 0.41 -0.7
4,177,949 - ABIE41_RS20335 0.41 -0.8
4,178,230 + ABIE41_RS20335 0.63 -1.0
4,178,231 - ABIE41_RS20335 0.63 +0.9
4,178,231 - ABIE41_RS20335 0.63 +0.0
4,178,231 - ABIE41_RS20335 0.63 -0.4
4,178,236 + ABIE41_RS20335 0.63 -1.2

Or see this region's nucleotide sequence