Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20285 and ABIE41_RS20290 overlap by 1 nucleotides ABIE41_RS20290 and ABIE41_RS20295 are separated by 72 nucleotides ABIE41_RS20295 and ABIE41_RS20300 are separated by 11 nucleotides
ABIE41_RS20285: ABIE41_RS20285 - ABC transporter ATP-binding protein, at 4,169,369 to 4,170,118
_RS20285
ABIE41_RS20290: ABIE41_RS20290 - hypothetical protein, at 4,170,118 to 4,171,650
_RS20290
ABIE41_RS20295: ABIE41_RS20295 - chlorite dismutase family protein, at 4,171,723 to 4,172,331
_RS20295
ABIE41_RS20300: ABIE41_RS20300 - SDR family NAD(P)-dependent oxidoreductase, at 4,172,343 to 4,173,053
_RS20300
Position (kb) 4170
4171
4172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4169.175 kb on + strand at 4169.314 kb on - strand at 4169.340 kb on + strand at 4169.472 kb on - strand, within ABIE41_RS20285 at 4169.472 kb on - strand, within ABIE41_RS20285 at 4169.472 kb on - strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.640 kb on - strand, within ABIE41_RS20285 at 4169.640 kb on - strand, within ABIE41_RS20285 at 4169.640 kb on - strand, within ABIE41_RS20285 at 4169.640 kb on - strand, within ABIE41_RS20285 at 4169.664 kb on - strand, within ABIE41_RS20285 at 4169.954 kb on - strand, within ABIE41_RS20285 at 4169.987 kb on - strand, within ABIE41_RS20285 at 4170.403 kb on + strand, within ABIE41_RS20290 at 4170.403 kb on + strand, within ABIE41_RS20290 at 4170.404 kb on - strand, within ABIE41_RS20290 at 4170.404 kb on - strand, within ABIE41_RS20290 at 4170.407 kb on - strand, within ABIE41_RS20290 at 4170.411 kb on - strand, within ABIE41_RS20290 at 4170.412 kb on + strand, within ABIE41_RS20290 at 4170.412 kb on + strand, within ABIE41_RS20290 at 4170.412 kb on + strand, within ABIE41_RS20290 at 4170.413 kb on - strand, within ABIE41_RS20290 at 4170.413 kb on - strand, within ABIE41_RS20290 at 4170.523 kb on + strand, within ABIE41_RS20290 at 4170.524 kb on - strand, within ABIE41_RS20290 at 4170.524 kb on - strand, within ABIE41_RS20290 at 4170.784 kb on + strand, within ABIE41_RS20290 at 4170.784 kb on + strand, within ABIE41_RS20290 at 4170.785 kb on - strand, within ABIE41_RS20290 at 4170.785 kb on - strand, within ABIE41_RS20290 at 4171.129 kb on + strand, within ABIE41_RS20290 at 4171.129 kb on + strand, within ABIE41_RS20290 at 4171.567 kb on + strand at 4171.567 kb on + strand at 4171.567 kb on + strand at 4171.567 kb on + strand at 4171.621 kb on + strand at 4171.621 kb on + strand at 4171.622 kb on - strand at 4171.786 kb on + strand, within ABIE41_RS20295 at 4171.786 kb on + strand, within ABIE41_RS20295 at 4171.786 kb on + strand, within ABIE41_RS20295 at 4171.787 kb on - strand, within ABIE41_RS20295 at 4171.787 kb on - strand, within ABIE41_RS20295 at 4171.787 kb on - strand, within ABIE41_RS20295 at 4172.075 kb on - strand, within ABIE41_RS20295 at 4172.134 kb on + strand, within ABIE41_RS20295 at 4172.135 kb on - strand, within ABIE41_RS20295 at 4172.594 kb on - strand, within ABIE41_RS20300 at 4172.594 kb on - strand, within ABIE41_RS20300
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 4,169,175 + -0.5 4,169,314 - +0.1 4,169,340 + +0.2 4,169,472 - ABIE41_RS20285 0.14 -2.4 4,169,472 - ABIE41_RS20285 0.14 -1.6 4,169,472 - ABIE41_RS20285 0.14 -0.8 4,169,639 + ABIE41_RS20285 0.36 +0.5 4,169,639 + ABIE41_RS20285 0.36 -0.8 4,169,639 + ABIE41_RS20285 0.36 +0.2 4,169,639 + ABIE41_RS20285 0.36 -0.1 4,169,639 + ABIE41_RS20285 0.36 -0.5 4,169,640 - ABIE41_RS20285 0.36 -0.0 4,169,640 - ABIE41_RS20285 0.36 +0.1 4,169,640 - ABIE41_RS20285 0.36 -0.2 4,169,640 - ABIE41_RS20285 0.36 -0.2 4,169,664 - ABIE41_RS20285 0.39 +1.8 4,169,954 - ABIE41_RS20285 0.78 -0.7 4,169,987 - ABIE41_RS20285 0.82 -0.8 4,170,403 + ABIE41_RS20290 0.19 +0.4 4,170,403 + ABIE41_RS20290 0.19 -1.1 4,170,404 - ABIE41_RS20290 0.19 +0.2 4,170,404 - ABIE41_RS20290 0.19 +0.4 4,170,407 - ABIE41_RS20290 0.19 +0.0 4,170,411 - ABIE41_RS20290 0.19 +0.6 4,170,412 + ABIE41_RS20290 0.19 +1.4 4,170,412 + ABIE41_RS20290 0.19 +0.1 4,170,412 + ABIE41_RS20290 0.19 -2.0 4,170,413 - ABIE41_RS20290 0.19 +0.7 4,170,413 - ABIE41_RS20290 0.19 +0.5 4,170,523 + ABIE41_RS20290 0.26 +0.6 4,170,524 - ABIE41_RS20290 0.26 -0.3 4,170,524 - ABIE41_RS20290 0.26 +0.5 4,170,784 + ABIE41_RS20290 0.43 +0.5 4,170,784 + ABIE41_RS20290 0.43 -0.1 4,170,785 - ABIE41_RS20290 0.44 +0.2 4,170,785 - ABIE41_RS20290 0.44 +0.7 4,171,129 + ABIE41_RS20290 0.66 -0.1 4,171,129 + ABIE41_RS20290 0.66 -0.1 4,171,567 + +0.3 4,171,567 + +0.5 4,171,567 + -0.2 4,171,567 + -1.0 4,171,621 + +2.2 4,171,621 + -0.9 4,171,622 - +0.6 4,171,786 + ABIE41_RS20295 0.10 +0.0 4,171,786 + ABIE41_RS20295 0.10 -0.3 4,171,786 + ABIE41_RS20295 0.10 -0.6 4,171,787 - ABIE41_RS20295 0.11 -0.2 4,171,787 - ABIE41_RS20295 0.11 -2.0 4,171,787 - ABIE41_RS20295 0.11 +0.7 4,172,075 - ABIE41_RS20295 0.58 -0.5 4,172,134 + ABIE41_RS20295 0.67 -0.5 4,172,135 - ABIE41_RS20295 0.68 -0.1 4,172,594 - ABIE41_RS20300 0.35 -1.2 4,172,594 - ABIE41_RS20300 0.35 -0.3
Or see this region's nucleotide sequence