Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18090

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS18075 and ABIE41_RS18080 are separated by 26 nucleotidesABIE41_RS18080 and ABIE41_RS18085 are separated by 15 nucleotidesABIE41_RS18085 and ABIE41_RS18090 are separated by 6 nucleotidesABIE41_RS18090 and ABIE41_RS18095 are separated by 117 nucleotidesABIE41_RS18095 and ABIE41_RS18100 are separated by 5 nucleotides ABIE41_RS18075: ABIE41_RS18075 - multicopper oxidase family protein, at 3,724,185 to 3,725,621 _RS18075 ABIE41_RS18080: ABIE41_RS18080 - DoxX family protein, at 3,725,648 to 3,726,022 _RS18080 ABIE41_RS18085: ABIE41_RS18085 - gluconokinase, at 3,726,038 to 3,726,565 _RS18085 ABIE41_RS18090: ABIE41_RS18090 - phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating), at 3,726,572 to 3,727,558 _RS18090 ABIE41_RS18095: ABIE41_RS18095 - hypothetical protein, at 3,727,676 to 3,727,978 _RS18095 ABIE41_RS18100: ABIE41_RS18100 - 1-aminocyclopropane-1-carboxylate deaminase, at 3,727,984 to 3,728,994 _RS18100 Position (kb) 3726 3727 3728Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3725.672 kb on + strandat 3725.760 kb on + strand, within ABIE41_RS18080at 3725.761 kb on - strand, within ABIE41_RS18080at 3725.761 kb on - strand, within ABIE41_RS18080at 3725.761 kb on - strand, within ABIE41_RS18080at 3725.849 kb on + strand, within ABIE41_RS18080at 3725.849 kb on + strand, within ABIE41_RS18080at 3725.931 kb on - strand, within ABIE41_RS18080at 3725.931 kb on - strand, within ABIE41_RS18080at 3726.235 kb on - strand, within ABIE41_RS18085at 3726.235 kb on - strand, within ABIE41_RS18085at 3726.318 kb on + strand, within ABIE41_RS18085at 3726.772 kb on - strand, within ABIE41_RS18090at 3726.891 kb on + strand, within ABIE41_RS18090at 3726.970 kb on - strand, within ABIE41_RS18090at 3727.032 kb on + strand, within ABIE41_RS18090at 3727.032 kb on + strand, within ABIE41_RS18090at 3727.033 kb on - strand, within ABIE41_RS18090at 3727.215 kb on + strand, within ABIE41_RS18090at 3727.216 kb on - strand, within ABIE41_RS18090at 3727.216 kb on - strand, within ABIE41_RS18090at 3727.216 kb on - strand, within ABIE41_RS18090at 3727.216 kb on - strand, within ABIE41_RS18090at 3728.003 kb on + strandat 3728.003 kb on + strandat 3728.003 kb on + strandat 3728.003 kb on + strandat 3728.003 kb on + strandat 3728.003 kb on + strandat 3728.004 kb on - strandat 3728.004 kb on - strandat 3728.004 kb on - strandat 3728.004 kb on - strandat 3728.004 kb on - strandat 3728.004 kb on - strandat 3728.004 kb on - strandat 3728.009 kb on + strandat 3728.009 kb on + strandat 3728.045 kb on + strandat 3728.046 kb on - strandat 3728.046 kb on - strandat 3728.046 kb on - strandat 3728.046 kb on - strandat 3728.121 kb on - strand, within ABIE41_RS18100at 3728.213 kb on + strand, within ABIE41_RS18100at 3728.213 kb on + strand, within ABIE41_RS18100at 3728.214 kb on - strand, within ABIE41_RS18100at 3728.421 kb on + strand, within ABIE41_RS18100at 3728.421 kb on + strand, within ABIE41_RS18100at 3728.422 kb on - strand, within ABIE41_RS18100at 3728.422 kb on - strand, within ABIE41_RS18100at 3728.422 kb on - strand, within ABIE41_RS18100at 3728.422 kb on - strand, within ABIE41_RS18100at 3728.424 kb on - strand, within ABIE41_RS18100at 3728.483 kb on + strand, within ABIE41_RS18100at 3728.483 kb on + strand, within ABIE41_RS18100at 3728.484 kb on - strand, within ABIE41_RS18100

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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3,725,672 + -1.1
3,725,760 + ABIE41_RS18080 0.30 +1.8
3,725,761 - ABIE41_RS18080 0.30 +0.9
3,725,761 - ABIE41_RS18080 0.30 +0.6
3,725,761 - ABIE41_RS18080 0.30 -1.0
3,725,849 + ABIE41_RS18080 0.54 +0.2
3,725,849 + ABIE41_RS18080 0.54 +0.4
3,725,931 - ABIE41_RS18080 0.75 +0.6
3,725,931 - ABIE41_RS18080 0.75 +1.4
3,726,235 - ABIE41_RS18085 0.37 -0.2
3,726,235 - ABIE41_RS18085 0.37 -2.0
3,726,318 + ABIE41_RS18085 0.53 +0.9
3,726,772 - ABIE41_RS18090 0.20 -0.2
3,726,891 + ABIE41_RS18090 0.32 +0.7
3,726,970 - ABIE41_RS18090 0.40 -0.8
3,727,032 + ABIE41_RS18090 0.47 -0.8
3,727,032 + ABIE41_RS18090 0.47 -1.1
3,727,033 - ABIE41_RS18090 0.47 -0.1
3,727,215 + ABIE41_RS18090 0.65 +1.5
3,727,216 - ABIE41_RS18090 0.65 +0.5
3,727,216 - ABIE41_RS18090 0.65 -3.2
3,727,216 - ABIE41_RS18090 0.65 -1.3
3,727,216 - ABIE41_RS18090 0.65 +1.8
3,728,003 + -1.1
3,728,003 + +0.8
3,728,003 + +0.3
3,728,003 + -0.8
3,728,003 + +0.5
3,728,003 + +1.2
3,728,004 - -0.0
3,728,004 - +0.6
3,728,004 - +0.1
3,728,004 - -1.0
3,728,004 - +0.5
3,728,004 - -0.4
3,728,004 - -0.7
3,728,009 + -0.2
3,728,009 + +0.8
3,728,045 + +0.5
3,728,046 - -1.5
3,728,046 - +0.5
3,728,046 - +0.3
3,728,046 - +0.6
3,728,121 - ABIE41_RS18100 0.14 +0.3
3,728,213 + ABIE41_RS18100 0.23 +0.3
3,728,213 + ABIE41_RS18100 0.23 +0.1
3,728,214 - ABIE41_RS18100 0.23 +1.0
3,728,421 + ABIE41_RS18100 0.43 +4.4
3,728,421 + ABIE41_RS18100 0.43 +0.9
3,728,422 - ABIE41_RS18100 0.43 +0.1
3,728,422 - ABIE41_RS18100 0.43 -1.0
3,728,422 - ABIE41_RS18100 0.43 +2.4
3,728,422 - ABIE41_RS18100 0.43 +0.3
3,728,424 - ABIE41_RS18100 0.44 +0.2
3,728,483 + ABIE41_RS18100 0.49 +0.8
3,728,483 + ABIE41_RS18100 0.49 -0.9
3,728,484 - ABIE41_RS18100 0.49 -0.1

Or see this region's nucleotide sequence