Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18075 and ABIE41_RS18080 are separated by 26 nucleotides ABIE41_RS18080 and ABIE41_RS18085 are separated by 15 nucleotides ABIE41_RS18085 and ABIE41_RS18090 are separated by 6 nucleotides ABIE41_RS18090 and ABIE41_RS18095 are separated by 117 nucleotides ABIE41_RS18095 and ABIE41_RS18100 are separated by 5 nucleotides
ABIE41_RS18075: ABIE41_RS18075 - multicopper oxidase family protein, at 3,724,185 to 3,725,621
_RS18075
ABIE41_RS18080: ABIE41_RS18080 - DoxX family protein, at 3,725,648 to 3,726,022
_RS18080
ABIE41_RS18085: ABIE41_RS18085 - gluconokinase, at 3,726,038 to 3,726,565
_RS18085
ABIE41_RS18090: ABIE41_RS18090 - phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating), at 3,726,572 to 3,727,558
_RS18090
ABIE41_RS18095: ABIE41_RS18095 - hypothetical protein, at 3,727,676 to 3,727,978
_RS18095
ABIE41_RS18100: ABIE41_RS18100 - 1-aminocyclopropane-1-carboxylate deaminase, at 3,727,984 to 3,728,994
_RS18100
Position (kb)
3726
3727
3728 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3725.672 kb on + strand at 3725.760 kb on + strand, within ABIE41_RS18080 at 3725.761 kb on - strand, within ABIE41_RS18080 at 3725.761 kb on - strand, within ABIE41_RS18080 at 3725.761 kb on - strand, within ABIE41_RS18080 at 3725.849 kb on + strand, within ABIE41_RS18080 at 3725.849 kb on + strand, within ABIE41_RS18080 at 3725.931 kb on - strand, within ABIE41_RS18080 at 3725.931 kb on - strand, within ABIE41_RS18080 at 3726.235 kb on - strand, within ABIE41_RS18085 at 3726.235 kb on - strand, within ABIE41_RS18085 at 3726.318 kb on + strand, within ABIE41_RS18085 at 3726.772 kb on - strand, within ABIE41_RS18090 at 3726.891 kb on + strand, within ABIE41_RS18090 at 3726.970 kb on - strand, within ABIE41_RS18090 at 3727.032 kb on + strand, within ABIE41_RS18090 at 3727.032 kb on + strand, within ABIE41_RS18090 at 3727.033 kb on - strand, within ABIE41_RS18090 at 3727.215 kb on + strand, within ABIE41_RS18090 at 3727.216 kb on - strand, within ABIE41_RS18090 at 3727.216 kb on - strand, within ABIE41_RS18090 at 3727.216 kb on - strand, within ABIE41_RS18090 at 3727.216 kb on - strand, within ABIE41_RS18090 at 3728.003 kb on + strand at 3728.003 kb on + strand at 3728.003 kb on + strand at 3728.003 kb on + strand at 3728.003 kb on + strand at 3728.003 kb on + strand at 3728.004 kb on - strand at 3728.004 kb on - strand at 3728.004 kb on - strand at 3728.004 kb on - strand at 3728.004 kb on - strand at 3728.004 kb on - strand at 3728.004 kb on - strand at 3728.009 kb on + strand at 3728.009 kb on + strand at 3728.045 kb on + strand at 3728.046 kb on - strand at 3728.046 kb on - strand at 3728.046 kb on - strand at 3728.046 kb on - strand at 3728.121 kb on - strand, within ABIE41_RS18100 at 3728.213 kb on + strand, within ABIE41_RS18100 at 3728.213 kb on + strand, within ABIE41_RS18100 at 3728.214 kb on - strand, within ABIE41_RS18100 at 3728.421 kb on + strand, within ABIE41_RS18100 at 3728.421 kb on + strand, within ABIE41_RS18100 at 3728.422 kb on - strand, within ABIE41_RS18100 at 3728.422 kb on - strand, within ABIE41_RS18100 at 3728.422 kb on - strand, within ABIE41_RS18100 at 3728.422 kb on - strand, within ABIE41_RS18100 at 3728.424 kb on - strand, within ABIE41_RS18100 at 3728.483 kb on + strand, within ABIE41_RS18100 at 3728.483 kb on + strand, within ABIE41_RS18100 at 3728.484 kb on - strand, within ABIE41_RS18100
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 3,725,672 + -1.1 3,725,760 + ABIE41_RS18080 0.30 +1.8 3,725,761 - ABIE41_RS18080 0.30 +0.9 3,725,761 - ABIE41_RS18080 0.30 +0.6 3,725,761 - ABIE41_RS18080 0.30 -1.0 3,725,849 + ABIE41_RS18080 0.54 +0.2 3,725,849 + ABIE41_RS18080 0.54 +0.4 3,725,931 - ABIE41_RS18080 0.75 +0.6 3,725,931 - ABIE41_RS18080 0.75 +1.4 3,726,235 - ABIE41_RS18085 0.37 -0.2 3,726,235 - ABIE41_RS18085 0.37 -2.0 3,726,318 + ABIE41_RS18085 0.53 +0.9 3,726,772 - ABIE41_RS18090 0.20 -0.2 3,726,891 + ABIE41_RS18090 0.32 +0.7 3,726,970 - ABIE41_RS18090 0.40 -0.8 3,727,032 + ABIE41_RS18090 0.47 -0.8 3,727,032 + ABIE41_RS18090 0.47 -1.1 3,727,033 - ABIE41_RS18090 0.47 -0.1 3,727,215 + ABIE41_RS18090 0.65 +1.5 3,727,216 - ABIE41_RS18090 0.65 +0.5 3,727,216 - ABIE41_RS18090 0.65 -3.2 3,727,216 - ABIE41_RS18090 0.65 -1.3 3,727,216 - ABIE41_RS18090 0.65 +1.8 3,728,003 + -1.1 3,728,003 + +0.8 3,728,003 + +0.3 3,728,003 + -0.8 3,728,003 + +0.5 3,728,003 + +1.2 3,728,004 - -0.0 3,728,004 - +0.6 3,728,004 - +0.1 3,728,004 - -1.0 3,728,004 - +0.5 3,728,004 - -0.4 3,728,004 - -0.7 3,728,009 + -0.2 3,728,009 + +0.8 3,728,045 + +0.5 3,728,046 - -1.5 3,728,046 - +0.5 3,728,046 - +0.3 3,728,046 - +0.6 3,728,121 - ABIE41_RS18100 0.14 +0.3 3,728,213 + ABIE41_RS18100 0.23 +0.3 3,728,213 + ABIE41_RS18100 0.23 +0.1 3,728,214 - ABIE41_RS18100 0.23 +1.0 3,728,421 + ABIE41_RS18100 0.43 +4.4 3,728,421 + ABIE41_RS18100 0.43 +0.9 3,728,422 - ABIE41_RS18100 0.43 +0.1 3,728,422 - ABIE41_RS18100 0.43 -1.0 3,728,422 - ABIE41_RS18100 0.43 +2.4 3,728,422 - ABIE41_RS18100 0.43 +0.3 3,728,424 - ABIE41_RS18100 0.44 +0.2 3,728,483 + ABIE41_RS18100 0.49 +0.8 3,728,483 + ABIE41_RS18100 0.49 -0.9 3,728,484 - ABIE41_RS18100 0.49 -0.1
Or see this region's nucleotide sequence