Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16770

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16765 and ABIE41_RS16770 are separated by 5 nucleotidesABIE41_RS16770 and ABIE41_RS16775 are separated by 209 nucleotides ABIE41_RS16765: ABIE41_RS16765 - GTPase HflX, at 3,454,946 to 3,456,328 _RS16765 ABIE41_RS16770: ABIE41_RS16770 - RNA chaperone Hfq, at 3,456,334 to 3,456,582 _RS16770 ABIE41_RS16775: ABIE41_RS16775 - sigma-54 dependent transcriptional regulator, at 3,456,792 to 3,458,159 _RS16775 Position (kb) 3456 3457Strain fitness (log2 ratio) -1 0 1 2 3at 3455.856 kb on + strand, within ABIE41_RS16765at 3455.856 kb on + strand, within ABIE41_RS16765at 3456.078 kb on + strand, within ABIE41_RS16765at 3456.078 kb on + strand, within ABIE41_RS16765at 3456.079 kb on - strand, within ABIE41_RS16765at 3456.079 kb on - strand, within ABIE41_RS16765at 3456.079 kb on - strand, within ABIE41_RS16765at 3456.238 kb on - strandat 3456.238 kb on - strandat 3456.238 kb on - strandat 3456.691 kb on - strandat 3456.691 kb on - strandat 3456.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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3,455,856 + ABIE41_RS16765 0.66 -1.3
3,455,856 + ABIE41_RS16765 0.66 +0.6
3,456,078 + ABIE41_RS16765 0.82 -0.0
3,456,078 + ABIE41_RS16765 0.82 +1.4
3,456,079 - ABIE41_RS16765 0.82 +2.1
3,456,079 - ABIE41_RS16765 0.82 +1.0
3,456,079 - ABIE41_RS16765 0.82 +3.0
3,456,238 - +0.8
3,456,238 - +0.6
3,456,238 - +1.0
3,456,691 - -1.4
3,456,691 - +0.5
3,456,691 - +0.1

Or see this region's nucleotide sequence