Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16765

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16755 and ABIE41_RS16760 are separated by 104 nucleotidesABIE41_RS16760 and ABIE41_RS16765 are separated by 24 nucleotidesABIE41_RS16765 and ABIE41_RS16770 are separated by 5 nucleotidesABIE41_RS16770 and ABIE41_RS16775 are separated by 209 nucleotides ABIE41_RS16755: ABIE41_RS16755 - DNA translocase FtsK, at 3,451,599 to 3,453,950 _RS16755 ABIE41_RS16760: ABIE41_RS16760 - alpha/beta hydrolase, at 3,454,055 to 3,454,921 _RS16760 ABIE41_RS16765: ABIE41_RS16765 - GTPase HflX, at 3,454,946 to 3,456,328 _RS16765 ABIE41_RS16770: ABIE41_RS16770 - RNA chaperone Hfq, at 3,456,334 to 3,456,582 _RS16770 ABIE41_RS16775: ABIE41_RS16775 - sigma-54 dependent transcriptional regulator, at 3,456,792 to 3,458,159 _RS16775 Position (kb) 3454 3455 3456 3457Strain fitness (log2 ratio) -1 0 1 2 3at 3453.972 kb on + strandat 3454.036 kb on + strandat 3454.213 kb on - strand, within ABIE41_RS16760at 3454.389 kb on + strand, within ABIE41_RS16760at 3454.443 kb on + strand, within ABIE41_RS16760at 3454.444 kb on - strand, within ABIE41_RS16760at 3454.444 kb on - strand, within ABIE41_RS16760at 3454.605 kb on + strand, within ABIE41_RS16760at 3454.606 kb on - strand, within ABIE41_RS16760at 3454.606 kb on - strand, within ABIE41_RS16760at 3454.606 kb on - strand, within ABIE41_RS16760at 3454.947 kb on + strandat 3454.948 kb on - strandat 3455.018 kb on - strandat 3455.121 kb on + strand, within ABIE41_RS16765at 3455.856 kb on + strand, within ABIE41_RS16765at 3455.856 kb on + strand, within ABIE41_RS16765at 3456.078 kb on + strand, within ABIE41_RS16765at 3456.078 kb on + strand, within ABIE41_RS16765at 3456.079 kb on - strand, within ABIE41_RS16765at 3456.079 kb on - strand, within ABIE41_RS16765at 3456.079 kb on - strand, within ABIE41_RS16765at 3456.238 kb on - strandat 3456.238 kb on - strandat 3456.238 kb on - strandat 3456.691 kb on - strandat 3456.691 kb on - strandat 3456.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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3,453,972 + -1.2
3,454,036 + -0.2
3,454,213 - ABIE41_RS16760 0.18 -1.5
3,454,389 + ABIE41_RS16760 0.39 +2.0
3,454,443 + ABIE41_RS16760 0.45 -0.9
3,454,444 - ABIE41_RS16760 0.45 -0.1
3,454,444 - ABIE41_RS16760 0.45 -1.5
3,454,605 + ABIE41_RS16760 0.63 -0.9
3,454,606 - ABIE41_RS16760 0.64 -0.1
3,454,606 - ABIE41_RS16760 0.64 -0.1
3,454,606 - ABIE41_RS16760 0.64 -1.7
3,454,947 + -0.9
3,454,948 - +1.1
3,455,018 - +0.6
3,455,121 + ABIE41_RS16765 0.13 +1.3
3,455,856 + ABIE41_RS16765 0.66 -1.3
3,455,856 + ABIE41_RS16765 0.66 +0.6
3,456,078 + ABIE41_RS16765 0.82 -0.0
3,456,078 + ABIE41_RS16765 0.82 +1.4
3,456,079 - ABIE41_RS16765 0.82 +2.1
3,456,079 - ABIE41_RS16765 0.82 +1.0
3,456,079 - ABIE41_RS16765 0.82 +3.0
3,456,238 - +0.8
3,456,238 - +0.6
3,456,238 - +1.0
3,456,691 - -1.4
3,456,691 - +0.5
3,456,691 - +0.1

Or see this region's nucleotide sequence