Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS16755 and ABIE41_RS16760 are separated by 104 nucleotides ABIE41_RS16760 and ABIE41_RS16765 are separated by 24 nucleotides ABIE41_RS16765 and ABIE41_RS16770 are separated by 5 nucleotides ABIE41_RS16770 and ABIE41_RS16775 are separated by 209 nucleotides
ABIE41_RS16755: ABIE41_RS16755 - DNA translocase FtsK, at 3,451,599 to 3,453,950
_RS16755
ABIE41_RS16760: ABIE41_RS16760 - alpha/beta hydrolase, at 3,454,055 to 3,454,921
_RS16760
ABIE41_RS16765: ABIE41_RS16765 - GTPase HflX, at 3,454,946 to 3,456,328
_RS16765
ABIE41_RS16770: ABIE41_RS16770 - RNA chaperone Hfq, at 3,456,334 to 3,456,582
_RS16770
ABIE41_RS16775: ABIE41_RS16775 - sigma-54 dependent transcriptional regulator, at 3,456,792 to 3,458,159
_RS16775
Position (kb)
3454
3455
3456
3457 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3453.972 kb on + strand at 3454.036 kb on + strand at 3454.213 kb on - strand, within ABIE41_RS16760 at 3454.389 kb on + strand, within ABIE41_RS16760 at 3454.443 kb on + strand, within ABIE41_RS16760 at 3454.444 kb on - strand, within ABIE41_RS16760 at 3454.444 kb on - strand, within ABIE41_RS16760 at 3454.605 kb on + strand, within ABIE41_RS16760 at 3454.606 kb on - strand, within ABIE41_RS16760 at 3454.606 kb on - strand, within ABIE41_RS16760 at 3454.606 kb on - strand, within ABIE41_RS16760 at 3454.947 kb on + strand at 3454.948 kb on - strand at 3455.018 kb on - strand at 3455.121 kb on + strand, within ABIE41_RS16765 at 3455.856 kb on + strand, within ABIE41_RS16765 at 3455.856 kb on + strand, within ABIE41_RS16765 at 3456.078 kb on + strand, within ABIE41_RS16765 at 3456.078 kb on + strand, within ABIE41_RS16765 at 3456.079 kb on - strand, within ABIE41_RS16765 at 3456.079 kb on - strand, within ABIE41_RS16765 at 3456.079 kb on - strand, within ABIE41_RS16765 at 3456.238 kb on - strand at 3456.238 kb on - strand at 3456.238 kb on - strand at 3456.691 kb on - strand at 3456.691 kb on - strand at 3456.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 3,453,972 + -1.2 3,454,036 + -0.2 3,454,213 - ABIE41_RS16760 0.18 -1.5 3,454,389 + ABIE41_RS16760 0.39 +2.0 3,454,443 + ABIE41_RS16760 0.45 -0.9 3,454,444 - ABIE41_RS16760 0.45 -0.1 3,454,444 - ABIE41_RS16760 0.45 -1.5 3,454,605 + ABIE41_RS16760 0.63 -0.9 3,454,606 - ABIE41_RS16760 0.64 -0.1 3,454,606 - ABIE41_RS16760 0.64 -0.1 3,454,606 - ABIE41_RS16760 0.64 -1.7 3,454,947 + -0.9 3,454,948 - +1.1 3,455,018 - +0.6 3,455,121 + ABIE41_RS16765 0.13 +1.3 3,455,856 + ABIE41_RS16765 0.66 -1.3 3,455,856 + ABIE41_RS16765 0.66 +0.6 3,456,078 + ABIE41_RS16765 0.82 -0.0 3,456,078 + ABIE41_RS16765 0.82 +1.4 3,456,079 - ABIE41_RS16765 0.82 +2.1 3,456,079 - ABIE41_RS16765 0.82 +1.0 3,456,079 - ABIE41_RS16765 0.82 +3.0 3,456,238 - +0.8 3,456,238 - +0.6 3,456,238 - +1.0 3,456,691 - -1.4 3,456,691 - +0.5 3,456,691 - +0.1
Or see this region's nucleotide sequence