Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14760

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14750 and ABIE41_RS14755 are separated by 13 nucleotidesABIE41_RS14755 and ABIE41_RS14760 are separated by 108 nucleotidesABIE41_RS14760 and ABIE41_RS14765 overlap by 4 nucleotidesABIE41_RS14765 and ABIE41_RS14770 are separated by 9 nucleotidesABIE41_RS14770 and ABIE41_RS14775 are separated by 125 nucleotides ABIE41_RS14750: ABIE41_RS14750 - DUF3253 domain-containing protein, at 3,017,945 to 3,018,214 _RS14750 ABIE41_RS14755: ABIE41_RS14755 - DUF599 family protein, at 3,018,228 to 3,018,938 _RS14755 ABIE41_RS14760: ABIE41_RS14760 - rhodanese-like domain-containing protein, at 3,019,047 to 3,019,475 _RS14760 ABIE41_RS14765: ABIE41_RS14765 - hypothetical protein, at 3,019,472 to 3,019,654 _RS14765 ABIE41_RS14770: ABIE41_RS14770 - gamma-glutamylcyclotransferase family protein, at 3,019,664 to 3,020,179 _RS14770 ABIE41_RS14775: ABIE41_RS14775 - isovaleryl-CoA dehydrogenase, at 3,020,305 to 3,021,477 _RS14775 Position (kb) 3019 3020Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3018.304 kb on + strand, within ABIE41_RS14755at 3018.304 kb on + strand, within ABIE41_RS14755at 3018.369 kb on - strand, within ABIE41_RS14755at 3018.369 kb on - strand, within ABIE41_RS14755at 3018.369 kb on - strand, within ABIE41_RS14755at 3018.369 kb on - strand, within ABIE41_RS14755at 3018.370 kb on + strand, within ABIE41_RS14755at 3018.370 kb on + strand, within ABIE41_RS14755at 3018.370 kb on + strand, within ABIE41_RS14755at 3018.370 kb on + strand, within ABIE41_RS14755at 3018.371 kb on - strand, within ABIE41_RS14755at 3018.371 kb on - strand, within ABIE41_RS14755at 3018.371 kb on - strand, within ABIE41_RS14755at 3018.371 kb on - strand, within ABIE41_RS14755at 3018.371 kb on - strand, within ABIE41_RS14755at 3018.520 kb on + strand, within ABIE41_RS14755at 3018.520 kb on + strand, within ABIE41_RS14755at 3018.521 kb on - strand, within ABIE41_RS14755at 3018.535 kb on + strand, within ABIE41_RS14755at 3019.071 kb on + strandat 3019.270 kb on - strand, within ABIE41_RS14760at 3019.791 kb on + strand, within ABIE41_RS14770at 3019.791 kb on + strand, within ABIE41_RS14770at 3019.791 kb on + strand, within ABIE41_RS14770at 3019.792 kb on - strand, within ABIE41_RS14770at 3019.792 kb on - strand, within ABIE41_RS14770at 3019.792 kb on - strand, within ABIE41_RS14770at 3019.840 kb on + strand, within ABIE41_RS14770at 3019.841 kb on - strand, within ABIE41_RS14770at 3019.843 kb on - strand, within ABIE41_RS14770at 3019.884 kb on + strand, within ABIE41_RS14770at 3019.885 kb on - strand, within ABIE41_RS14770at 3019.885 kb on - strand, within ABIE41_RS14770at 3019.941 kb on + strand, within ABIE41_RS14770at 3019.941 kb on + strand, within ABIE41_RS14770at 3019.941 kb on + strand, within ABIE41_RS14770at 3019.941 kb on + strand, within ABIE41_RS14770at 3019.941 kb on + strand, within ABIE41_RS14770at 3019.942 kb on - strand, within ABIE41_RS14770at 3020.378 kb on + strandat 3020.379 kb on - strandat 3020.426 kb on + strand, within ABIE41_RS14775at 3020.426 kb on + strand, within ABIE41_RS14775at 3020.427 kb on - strand, within ABIE41_RS14775

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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3,018,304 + ABIE41_RS14755 0.11 +3.2
3,018,304 + ABIE41_RS14755 0.11 +0.4
3,018,369 - ABIE41_RS14755 0.20 +0.9
3,018,369 - ABIE41_RS14755 0.20 +0.3
3,018,369 - ABIE41_RS14755 0.20 -0.0
3,018,369 - ABIE41_RS14755 0.20 -1.0
3,018,370 + ABIE41_RS14755 0.20 +0.2
3,018,370 + ABIE41_RS14755 0.20 +0.1
3,018,370 + ABIE41_RS14755 0.20 +2.4
3,018,370 + ABIE41_RS14755 0.20 -0.2
3,018,371 - ABIE41_RS14755 0.20 +0.2
3,018,371 - ABIE41_RS14755 0.20 -1.4
3,018,371 - ABIE41_RS14755 0.20 +0.3
3,018,371 - ABIE41_RS14755 0.20 -0.4
3,018,371 - ABIE41_RS14755 0.20 -0.7
3,018,520 + ABIE41_RS14755 0.41 +0.0
3,018,520 + ABIE41_RS14755 0.41 +0.2
3,018,521 - ABIE41_RS14755 0.41 +1.4
3,018,535 + ABIE41_RS14755 0.43 +0.3
3,019,071 + +0.1
3,019,270 - ABIE41_RS14760 0.52 +0.8
3,019,791 + ABIE41_RS14770 0.25 +0.1
3,019,791 + ABIE41_RS14770 0.25 -0.4
3,019,791 + ABIE41_RS14770 0.25 -1.7
3,019,792 - ABIE41_RS14770 0.25 +0.4
3,019,792 - ABIE41_RS14770 0.25 +0.3
3,019,792 - ABIE41_RS14770 0.25 -0.0
3,019,840 + ABIE41_RS14770 0.34 +0.3
3,019,841 - ABIE41_RS14770 0.34 +0.9
3,019,843 - ABIE41_RS14770 0.35 +1.2
3,019,884 + ABIE41_RS14770 0.43 +0.2
3,019,885 - ABIE41_RS14770 0.43 +1.3
3,019,885 - ABIE41_RS14770 0.43 +1.5
3,019,941 + ABIE41_RS14770 0.54 +1.7
3,019,941 + ABIE41_RS14770 0.54 +1.9
3,019,941 + ABIE41_RS14770 0.54 +0.2
3,019,941 + ABIE41_RS14770 0.54 -0.8
3,019,941 + ABIE41_RS14770 0.54 +1.0
3,019,942 - ABIE41_RS14770 0.54 +0.2
3,020,378 + +0.4
3,020,379 - -2.3
3,020,426 + ABIE41_RS14775 0.10 -1.0
3,020,426 + ABIE41_RS14775 0.10 +0.1
3,020,427 - ABIE41_RS14775 0.10 +2.5

Or see this region's nucleotide sequence