Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS12920 and ABIE41_RS12925 are separated by 192 nucleotides ABIE41_RS12925 and ABIE41_RS12930 are separated by 24 nucleotides ABIE41_RS12930 and ABIE41_RS12935 are separated by 174 nucleotides ABIE41_RS12935 and ABIE41_RS12940 are separated by 205 nucleotides
ABIE41_RS12920: ABIE41_RS12920 - ketol-acid reductoisomerase, at 2,644,230 to 2,645,250
_RS12920
ABIE41_RS12925: ABIE41_RS12925 - hypothetical protein, at 2,645,443 to 2,645,619
_RS12925
ABIE41_RS12930: ABIE41_RS12930 - hypothetical protein, at 2,645,644 to 2,645,877
_RS12930
ABIE41_RS12935: ABIE41_RS12935 - DedA family protein, at 2,646,052 to 2,646,594
_RS12935
ABIE41_RS12940: ABIE41_RS12940 - ABC transporter ATP-binding protein, at 2,646,800 to 2,647,687
_RS12940
Position (kb)
2645
2646 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2645.661 kb on + strand at 2645.661 kb on + strand at 2645.918 kb on + strand at 2645.919 kb on - strand at 2645.945 kb on + strand at 2645.945 kb on + strand at 2645.946 kb on - strand at 2645.946 kb on - strand at 2646.108 kb on - strand, within ABIE41_RS12935 at 2646.108 kb on - strand, within ABIE41_RS12935 at 2646.108 kb on - strand, within ABIE41_RS12935 at 2646.108 kb on - strand, within ABIE41_RS12935 at 2646.315 kb on - strand, within ABIE41_RS12935 at 2646.354 kb on - strand, within ABIE41_RS12935 at 2646.629 kb on + strand at 2646.630 kb on - strand at 2646.670 kb on + strand at 2646.670 kb on + strand at 2646.723 kb on + strand at 2646.723 kb on + strand at 2646.723 kb on + strand at 2646.724 kb on - strand at 2646.799 kb on + strand at 2646.799 kb on + strand at 2646.799 kb on + strand at 2646.799 kb on + strand at 2646.799 kb on + strand at 2646.800 kb on - strand at 2646.800 kb on - strand at 2646.800 kb on - strand at 2646.800 kb on - strand at 2646.800 kb on - strand at 2646.807 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 2,645,661 + +0.6 2,645,661 + +1.3 2,645,918 + +0.3 2,645,919 - +0.0 2,645,945 + +2.2 2,645,945 + -1.2 2,645,946 - +1.1 2,645,946 - -0.4 2,646,108 - ABIE41_RS12935 0.10 +0.2 2,646,108 - ABIE41_RS12935 0.10 -0.1 2,646,108 - ABIE41_RS12935 0.10 +1.1 2,646,108 - ABIE41_RS12935 0.10 -0.0 2,646,315 - ABIE41_RS12935 0.48 +0.6 2,646,354 - ABIE41_RS12935 0.56 -0.1 2,646,629 + -1.0 2,646,630 - +0.0 2,646,670 + +0.1 2,646,670 + -1.4 2,646,723 + +0.9 2,646,723 + -0.1 2,646,723 + -0.1 2,646,724 - -1.0 2,646,799 + +0.4 2,646,799 + -0.7 2,646,799 + +1.5 2,646,799 + -0.5 2,646,799 + -0.2 2,646,800 - -0.0 2,646,800 - +2.2 2,646,800 - +2.8 2,646,800 - -0.8 2,646,800 - +0.2 2,646,807 + -0.3
Or see this region's nucleotide sequence