Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12930

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS12920 and ABIE41_RS12925 are separated by 192 nucleotidesABIE41_RS12925 and ABIE41_RS12930 are separated by 24 nucleotidesABIE41_RS12930 and ABIE41_RS12935 are separated by 174 nucleotidesABIE41_RS12935 and ABIE41_RS12940 are separated by 205 nucleotides ABIE41_RS12920: ABIE41_RS12920 - ketol-acid reductoisomerase, at 2,644,230 to 2,645,250 _RS12920 ABIE41_RS12925: ABIE41_RS12925 - hypothetical protein, at 2,645,443 to 2,645,619 _RS12925 ABIE41_RS12930: ABIE41_RS12930 - hypothetical protein, at 2,645,644 to 2,645,877 _RS12930 ABIE41_RS12935: ABIE41_RS12935 - DedA family protein, at 2,646,052 to 2,646,594 _RS12935 ABIE41_RS12940: ABIE41_RS12940 - ABC transporter ATP-binding protein, at 2,646,800 to 2,647,687 _RS12940 Position (kb) 2645 2646Strain fitness (log2 ratio) -1 0 1 2 3at 2645.661 kb on + strandat 2645.661 kb on + strandat 2645.918 kb on + strandat 2645.919 kb on - strandat 2645.945 kb on + strandat 2645.945 kb on + strandat 2645.946 kb on - strandat 2645.946 kb on - strandat 2646.108 kb on - strand, within ABIE41_RS12935at 2646.108 kb on - strand, within ABIE41_RS12935at 2646.108 kb on - strand, within ABIE41_RS12935at 2646.108 kb on - strand, within ABIE41_RS12935at 2646.315 kb on - strand, within ABIE41_RS12935at 2646.354 kb on - strand, within ABIE41_RS12935at 2646.629 kb on + strandat 2646.630 kb on - strandat 2646.670 kb on + strandat 2646.670 kb on + strandat 2646.723 kb on + strandat 2646.723 kb on + strandat 2646.723 kb on + strandat 2646.724 kb on - strandat 2646.799 kb on + strandat 2646.799 kb on + strandat 2646.799 kb on + strandat 2646.799 kb on + strandat 2646.799 kb on + strandat 2646.800 kb on - strandat 2646.800 kb on - strandat 2646.800 kb on - strandat 2646.800 kb on - strandat 2646.800 kb on - strandat 2646.807 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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2,645,661 + +0.6
2,645,661 + +1.3
2,645,918 + +0.3
2,645,919 - +0.0
2,645,945 + +2.2
2,645,945 + -1.2
2,645,946 - +1.1
2,645,946 - -0.4
2,646,108 - ABIE41_RS12935 0.10 +0.2
2,646,108 - ABIE41_RS12935 0.10 -0.1
2,646,108 - ABIE41_RS12935 0.10 +1.1
2,646,108 - ABIE41_RS12935 0.10 -0.0
2,646,315 - ABIE41_RS12935 0.48 +0.6
2,646,354 - ABIE41_RS12935 0.56 -0.1
2,646,629 + -1.0
2,646,630 - +0.0
2,646,670 + +0.1
2,646,670 + -1.4
2,646,723 + +0.9
2,646,723 + -0.1
2,646,723 + -0.1
2,646,724 - -1.0
2,646,799 + +0.4
2,646,799 + -0.7
2,646,799 + +1.5
2,646,799 + -0.5
2,646,799 + -0.2
2,646,800 - -0.0
2,646,800 - +2.2
2,646,800 - +2.8
2,646,800 - -0.8
2,646,800 - +0.2
2,646,807 + -0.3

Or see this region's nucleotide sequence