Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12010

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11995 and ABIE41_RS12000 are separated by 47 nucleotidesABIE41_RS12000 and ABIE41_RS12005 overlap by 4 nucleotidesABIE41_RS12005 and ABIE41_RS12010 are separated by 111 nucleotidesABIE41_RS12010 and ABIE41_RS12015 overlap by 4 nucleotidesABIE41_RS12015 and ABIE41_RS12020 are separated by 134 nucleotides ABIE41_RS11995: ABIE41_RS11995 - RNA polymerase sigma factor RpoD, at 2,451,780 to 2,453,807 _RS11995 ABIE41_RS12000: ABIE41_RS12000 - DUF4160 domain-containing protein, at 2,453,855 to 2,454,121 _RS12000 ABIE41_RS12005: ABIE41_RS12005 - DUF2442 domain-containing protein, at 2,454,118 to 2,454,393 _RS12005 ABIE41_RS12010: ABIE41_RS12010 - SRPBCC family protein, at 2,454,505 to 2,454,987 _RS12010 ABIE41_RS12015: ABIE41_RS12015 - metalloregulator ArsR/SmtB family transcription factor, at 2,454,984 to 2,455,328 _RS12015 ABIE41_RS12020: ABIE41_RS12020 - LysE family translocator, at 2,455,463 to 2,456,074 _RS12020 Position (kb) 2454 2455Strain fitness (log2 ratio) -2 -1 0 1at 2453.897 kb on + strand, within ABIE41_RS12000at 2453.897 kb on + strand, within ABIE41_RS12000at 2453.897 kb on + strand, within ABIE41_RS12000at 2453.897 kb on + strand, within ABIE41_RS12000at 2453.898 kb on - strand, within ABIE41_RS12000at 2453.898 kb on - strand, within ABIE41_RS12000at 2453.898 kb on - strand, within ABIE41_RS12000at 2453.936 kb on + strand, within ABIE41_RS12000at 2453.937 kb on - strand, within ABIE41_RS12000at 2453.937 kb on - strand, within ABIE41_RS12000at 2453.937 kb on - strand, within ABIE41_RS12000at 2453.937 kb on - strand, within ABIE41_RS12000at 2453.992 kb on + strand, within ABIE41_RS12000at 2453.993 kb on - strand, within ABIE41_RS12000at 2454.116 kb on + strandat 2454.421 kb on - strandat 2454.623 kb on + strand, within ABIE41_RS12010at 2454.623 kb on + strand, within ABIE41_RS12010at 2454.624 kb on - strand, within ABIE41_RS12010at 2455.526 kb on + strand, within ABIE41_RS12020at 2455.526 kb on + strand, within ABIE41_RS12020at 2455.526 kb on + strand, within ABIE41_RS12020at 2455.527 kb on - strand, within ABIE41_RS12020at 2455.527 kb on - strand, within ABIE41_RS12020at 2455.527 kb on - strand, within ABIE41_RS12020at 2455.527 kb on - strand, within ABIE41_RS12020at 2455.527 kb on - strand, within ABIE41_RS12020at 2455.527 kb on - strand, within ABIE41_RS12020at 2455.679 kb on + strand, within ABIE41_RS12020at 2455.680 kb on - strand, within ABIE41_RS12020at 2455.694 kb on + strand, within ABIE41_RS12020at 2455.695 kb on - strand, within ABIE41_RS12020at 2455.695 kb on - strand, within ABIE41_RS12020at 2455.946 kb on + strand, within ABIE41_RS12020at 2455.946 kb on + strand, within ABIE41_RS12020at 2455.947 kb on - strand, within ABIE41_RS12020

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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2,453,897 + ABIE41_RS12000 0.16 -1.1
2,453,897 + ABIE41_RS12000 0.16 -0.9
2,453,897 + ABIE41_RS12000 0.16 +0.4
2,453,897 + ABIE41_RS12000 0.16 -1.8
2,453,898 - ABIE41_RS12000 0.16 -0.4
2,453,898 - ABIE41_RS12000 0.16 -0.7
2,453,898 - ABIE41_RS12000 0.16 +1.0
2,453,936 + ABIE41_RS12000 0.30 -0.2
2,453,937 - ABIE41_RS12000 0.31 -0.4
2,453,937 - ABIE41_RS12000 0.31 -0.5
2,453,937 - ABIE41_RS12000 0.31 -0.5
2,453,937 - ABIE41_RS12000 0.31 +1.4
2,453,992 + ABIE41_RS12000 0.51 -0.8
2,453,993 - ABIE41_RS12000 0.52 +0.1
2,454,116 + +0.2
2,454,421 - -0.7
2,454,623 + ABIE41_RS12010 0.24 +0.5
2,454,623 + ABIE41_RS12010 0.24 +0.3
2,454,624 - ABIE41_RS12010 0.25 +0.8
2,455,526 + ABIE41_RS12020 0.10 -0.5
2,455,526 + ABIE41_RS12020 0.10 -0.4
2,455,526 + ABIE41_RS12020 0.10 -1.0
2,455,527 - ABIE41_RS12020 0.10 +0.2
2,455,527 - ABIE41_RS12020 0.10 +0.3
2,455,527 - ABIE41_RS12020 0.10 +0.0
2,455,527 - ABIE41_RS12020 0.10 -0.0
2,455,527 - ABIE41_RS12020 0.10 -0.2
2,455,527 - ABIE41_RS12020 0.10 -0.0
2,455,679 + ABIE41_RS12020 0.35 +0.3
2,455,680 - ABIE41_RS12020 0.35 -0.2
2,455,694 + ABIE41_RS12020 0.38 +0.1
2,455,695 - ABIE41_RS12020 0.38 +0.7
2,455,695 - ABIE41_RS12020 0.38 +1.0
2,455,946 + ABIE41_RS12020 0.79 +0.2
2,455,946 + ABIE41_RS12020 0.79 +0.4
2,455,947 - ABIE41_RS12020 0.79 -0.0

Or see this region's nucleotide sequence