Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS11995 and ABIE41_RS12000 are separated by 47 nucleotides ABIE41_RS12000 and ABIE41_RS12005 overlap by 4 nucleotides ABIE41_RS12005 and ABIE41_RS12010 are separated by 111 nucleotides ABIE41_RS12010 and ABIE41_RS12015 overlap by 4 nucleotides ABIE41_RS12015 and ABIE41_RS12020 are separated by 134 nucleotides
ABIE41_RS11995: ABIE41_RS11995 - RNA polymerase sigma factor RpoD, at 2,451,780 to 2,453,807
_RS11995
ABIE41_RS12000: ABIE41_RS12000 - DUF4160 domain-containing protein, at 2,453,855 to 2,454,121
_RS12000
ABIE41_RS12005: ABIE41_RS12005 - DUF2442 domain-containing protein, at 2,454,118 to 2,454,393
_RS12005
ABIE41_RS12010: ABIE41_RS12010 - SRPBCC family protein, at 2,454,505 to 2,454,987
_RS12010
ABIE41_RS12015: ABIE41_RS12015 - metalloregulator ArsR/SmtB family transcription factor, at 2,454,984 to 2,455,328
_RS12015
ABIE41_RS12020: ABIE41_RS12020 - LysE family translocator, at 2,455,463 to 2,456,074
_RS12020
Position (kb)
2454
2455 Strain fitness (log2 ratio)
-2
-1
0
1 at 2453.897 kb on + strand, within ABIE41_RS12000 at 2453.897 kb on + strand, within ABIE41_RS12000 at 2453.897 kb on + strand, within ABIE41_RS12000 at 2453.897 kb on + strand, within ABIE41_RS12000 at 2453.898 kb on - strand, within ABIE41_RS12000 at 2453.898 kb on - strand, within ABIE41_RS12000 at 2453.898 kb on - strand, within ABIE41_RS12000 at 2453.936 kb on + strand, within ABIE41_RS12000 at 2453.937 kb on - strand, within ABIE41_RS12000 at 2453.937 kb on - strand, within ABIE41_RS12000 at 2453.937 kb on - strand, within ABIE41_RS12000 at 2453.937 kb on - strand, within ABIE41_RS12000 at 2453.992 kb on + strand, within ABIE41_RS12000 at 2453.993 kb on - strand, within ABIE41_RS12000 at 2454.116 kb on + strand at 2454.421 kb on - strand at 2454.623 kb on + strand, within ABIE41_RS12010 at 2454.623 kb on + strand, within ABIE41_RS12010 at 2454.624 kb on - strand, within ABIE41_RS12010 at 2455.526 kb on + strand, within ABIE41_RS12020 at 2455.526 kb on + strand, within ABIE41_RS12020 at 2455.526 kb on + strand, within ABIE41_RS12020 at 2455.527 kb on - strand, within ABIE41_RS12020 at 2455.527 kb on - strand, within ABIE41_RS12020 at 2455.527 kb on - strand, within ABIE41_RS12020 at 2455.527 kb on - strand, within ABIE41_RS12020 at 2455.527 kb on - strand, within ABIE41_RS12020 at 2455.527 kb on - strand, within ABIE41_RS12020 at 2455.679 kb on + strand, within ABIE41_RS12020 at 2455.680 kb on - strand, within ABIE41_RS12020 at 2455.694 kb on + strand, within ABIE41_RS12020 at 2455.695 kb on - strand, within ABIE41_RS12020 at 2455.695 kb on - strand, within ABIE41_RS12020 at 2455.946 kb on + strand, within ABIE41_RS12020 at 2455.946 kb on + strand, within ABIE41_RS12020 at 2455.947 kb on - strand, within ABIE41_RS12020
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 2,453,897 + ABIE41_RS12000 0.16 -1.1 2,453,897 + ABIE41_RS12000 0.16 -0.9 2,453,897 + ABIE41_RS12000 0.16 +0.4 2,453,897 + ABIE41_RS12000 0.16 -1.8 2,453,898 - ABIE41_RS12000 0.16 -0.4 2,453,898 - ABIE41_RS12000 0.16 -0.7 2,453,898 - ABIE41_RS12000 0.16 +1.0 2,453,936 + ABIE41_RS12000 0.30 -0.2 2,453,937 - ABIE41_RS12000 0.31 -0.4 2,453,937 - ABIE41_RS12000 0.31 -0.5 2,453,937 - ABIE41_RS12000 0.31 -0.5 2,453,937 - ABIE41_RS12000 0.31 +1.4 2,453,992 + ABIE41_RS12000 0.51 -0.8 2,453,993 - ABIE41_RS12000 0.52 +0.1 2,454,116 + +0.2 2,454,421 - -0.7 2,454,623 + ABIE41_RS12010 0.24 +0.5 2,454,623 + ABIE41_RS12010 0.24 +0.3 2,454,624 - ABIE41_RS12010 0.25 +0.8 2,455,526 + ABIE41_RS12020 0.10 -0.5 2,455,526 + ABIE41_RS12020 0.10 -0.4 2,455,526 + ABIE41_RS12020 0.10 -1.0 2,455,527 - ABIE41_RS12020 0.10 +0.2 2,455,527 - ABIE41_RS12020 0.10 +0.3 2,455,527 - ABIE41_RS12020 0.10 +0.0 2,455,527 - ABIE41_RS12020 0.10 -0.0 2,455,527 - ABIE41_RS12020 0.10 -0.2 2,455,527 - ABIE41_RS12020 0.10 -0.0 2,455,679 + ABIE41_RS12020 0.35 +0.3 2,455,680 - ABIE41_RS12020 0.35 -0.2 2,455,694 + ABIE41_RS12020 0.38 +0.1 2,455,695 - ABIE41_RS12020 0.38 +0.7 2,455,695 - ABIE41_RS12020 0.38 +1.0 2,455,946 + ABIE41_RS12020 0.79 +0.2 2,455,946 + ABIE41_RS12020 0.79 +0.4 2,455,947 - ABIE41_RS12020 0.79 -0.0
Or see this region's nucleotide sequence