Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS11290 and ABIE41_RS11295 are separated by 16 nucleotides ABIE41_RS11295 and ABIE41_RS11300 are separated by 9 nucleotides ABIE41_RS11300 and ABIE41_RS11305 overlap by 11 nucleotides ABIE41_RS11305 and ABIE41_RS11310 are separated by 144 nucleotides
ABIE41_RS11290: ABIE41_RS11290 - MaoC family dehydratase, at 2,321,909 to 2,322,922
_RS11290
ABIE41_RS11295: ABIE41_RS11295 - redox-regulated ATPase YchF, at 2,322,939 to 2,324,036
_RS11295
ABIE41_RS11300: ABIE41_RS11300 - PIN domain-containing protein, at 2,324,046 to 2,324,492
_RS11300
ABIE41_RS11305: ABIE41_RS11305 - hypothetical protein, at 2,324,482 to 2,324,712
_RS11305
ABIE41_RS11310: ABIE41_RS11310 - hypothetical protein, at 2,324,857 to 2,325,453
_RS11310
Position (kb)
2322
2323
2324
2325 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2322.054 kb on + strand, within ABIE41_RS11290 at 2322.055 kb on - strand, within ABIE41_RS11290 at 2322.055 kb on - strand, within ABIE41_RS11290 at 2322.435 kb on + strand, within ABIE41_RS11290 at 2322.435 kb on + strand, within ABIE41_RS11290 at 2322.436 kb on - strand, within ABIE41_RS11290 at 2322.436 kb on - strand, within ABIE41_RS11290 at 2322.986 kb on - strand at 2323.085 kb on - strand, within ABIE41_RS11295 at 2323.187 kb on - strand, within ABIE41_RS11295 at 2323.423 kb on + strand, within ABIE41_RS11295 at 2323.424 kb on - strand, within ABIE41_RS11295 at 2324.130 kb on - strand, within ABIE41_RS11300 at 2324.130 kb on - strand, within ABIE41_RS11300 at 2324.146 kb on + strand, within ABIE41_RS11300 at 2324.146 kb on + strand, within ABIE41_RS11300 at 2324.201 kb on - strand, within ABIE41_RS11300 at 2324.237 kb on + strand, within ABIE41_RS11300 at 2324.237 kb on + strand, within ABIE41_RS11300 at 2324.266 kb on + strand, within ABIE41_RS11300 at 2324.355 kb on + strand, within ABIE41_RS11300 at 2324.356 kb on - strand, within ABIE41_RS11300 at 2324.429 kb on + strand, within ABIE41_RS11300 at 2324.429 kb on + strand, within ABIE41_RS11300 at 2324.429 kb on + strand, within ABIE41_RS11300 at 2324.430 kb on - strand, within ABIE41_RS11300 at 2324.430 kb on - strand, within ABIE41_RS11300 at 2324.452 kb on + strand at 2324.453 kb on - strand at 2324.483 kb on + strand at 2324.492 kb on + strand at 2324.493 kb on - strand at 2324.493 kb on - strand at 2324.493 kb on - strand at 2324.624 kb on + strand, within ABIE41_RS11305 at 2324.625 kb on - strand, within ABIE41_RS11305 at 2324.633 kb on - strand, within ABIE41_RS11305 at 2324.931 kb on + strand, within ABIE41_RS11310 at 2324.931 kb on + strand, within ABIE41_RS11310 at 2324.931 kb on + strand, within ABIE41_RS11310 at 2324.932 kb on - strand, within ABIE41_RS11310 at 2325.023 kb on - strand, within ABIE41_RS11310 at 2325.023 kb on - strand, within ABIE41_RS11310
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 2,322,054 + ABIE41_RS11290 0.14 -1.2 2,322,055 - ABIE41_RS11290 0.14 +0.2 2,322,055 - ABIE41_RS11290 0.14 -0.2 2,322,435 + ABIE41_RS11290 0.52 -1.0 2,322,435 + ABIE41_RS11290 0.52 +1.8 2,322,436 - ABIE41_RS11290 0.52 +0.7 2,322,436 - ABIE41_RS11290 0.52 -0.7 2,322,986 - +0.8 2,323,085 - ABIE41_RS11295 0.13 -0.2 2,323,187 - ABIE41_RS11295 0.23 -1.8 2,323,423 + ABIE41_RS11295 0.44 +0.5 2,323,424 - ABIE41_RS11295 0.44 +0.8 2,324,130 - ABIE41_RS11300 0.19 -0.3 2,324,130 - ABIE41_RS11300 0.19 +0.2 2,324,146 + ABIE41_RS11300 0.22 -1.6 2,324,146 + ABIE41_RS11300 0.22 +1.8 2,324,201 - ABIE41_RS11300 0.35 +0.6 2,324,237 + ABIE41_RS11300 0.43 +1.5 2,324,237 + ABIE41_RS11300 0.43 -0.0 2,324,266 + ABIE41_RS11300 0.49 -0.0 2,324,355 + ABIE41_RS11300 0.69 +0.9 2,324,356 - ABIE41_RS11300 0.69 +0.5 2,324,429 + ABIE41_RS11300 0.86 -0.2 2,324,429 + ABIE41_RS11300 0.86 -0.1 2,324,429 + ABIE41_RS11300 0.86 -0.2 2,324,430 - ABIE41_RS11300 0.86 -0.1 2,324,430 - ABIE41_RS11300 0.86 +1.8 2,324,452 + +0.2 2,324,453 - +0.5 2,324,483 + +1.1 2,324,492 + +0.2 2,324,493 - +0.5 2,324,493 - +0.1 2,324,493 - -0.5 2,324,624 + ABIE41_RS11305 0.61 +1.2 2,324,625 - ABIE41_RS11305 0.62 -0.6 2,324,633 - ABIE41_RS11305 0.65 -1.4 2,324,931 + ABIE41_RS11310 0.12 -2.6 2,324,931 + ABIE41_RS11310 0.12 -0.4 2,324,931 + ABIE41_RS11310 0.12 -0.3 2,324,932 - ABIE41_RS11310 0.13 -1.3 2,325,023 - ABIE41_RS11310 0.28 -0.5 2,325,023 - ABIE41_RS11310 0.28 +0.3
Or see this region's nucleotide sequence