Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08855

Experiment: R2A no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS08845 and ABIE41_RS08850 are separated by 11 nucleotidesABIE41_RS08850 and ABIE41_RS08855 are separated by 221 nucleotidesABIE41_RS08855 and ABIE41_RS08860 are separated by 164 nucleotidesABIE41_RS08860 and ABIE41_RS08865 are separated by 2 nucleotides ABIE41_RS08845: ABIE41_RS08845 - dihydrodipicolinate synthase family protein, at 1,830,896 to 1,831,789 _RS08845 ABIE41_RS08850: ABIE41_RS08850 - GntR family transcriptional regulator, at 1,831,801 to 1,832,478 _RS08850 ABIE41_RS08855: ABIE41_RS08855 - sialic acid TRAP transporter substrate-binding protein SiaP, at 1,832,700 to 1,833,695 _RS08855 ABIE41_RS08860: ABIE41_RS08860 - TRAP transporter small permease, at 1,833,860 to 1,834,357 _RS08860 ABIE41_RS08865: ABIE41_RS08865 - TRAP transporter large permease, at 1,834,360 to 1,835,640 _RS08865 Position (kb) 1832 1833 1834Strain fitness (log2 ratio) -1 0 1 2 3at 1831.861 kb on + strandat 1831.861 kb on + strandat 1832.442 kb on + strandat 1832.443 kb on - strandat 1832.457 kb on + strandat 1832.473 kb on + strandat 1832.891 kb on + strand, within ABIE41_RS08855at 1833.039 kb on + strand, within ABIE41_RS08855at 1833.039 kb on + strand, within ABIE41_RS08855at 1833.040 kb on - strand, within ABIE41_RS08855at 1833.150 kb on + strand, within ABIE41_RS08855at 1833.150 kb on + strand, within ABIE41_RS08855at 1833.150 kb on + strand, within ABIE41_RS08855at 1833.150 kb on + strand, within ABIE41_RS08855at 1833.150 kb on + strand, within ABIE41_RS08855at 1833.151 kb on - strand, within ABIE41_RS08855at 1833.151 kb on - strand, within ABIE41_RS08855at 1833.151 kb on - strand, within ABIE41_RS08855at 1833.151 kb on - strand, within ABIE41_RS08855at 1833.151 kb on - strand, within ABIE41_RS08855at 1833.151 kb on - strand, within ABIE41_RS08855at 1833.306 kb on + strand, within ABIE41_RS08855at 1833.307 kb on - strand, within ABIE41_RS08855at 1833.307 kb on - strand, within ABIE41_RS08855at 1834.004 kb on + strand, within ABIE41_RS08860at 1834.005 kb on - strand, within ABIE41_RS08860at 1834.005 kb on - strand, within ABIE41_RS08860at 1834.063 kb on + strand, within ABIE41_RS08860at 1834.064 kb on - strand, within ABIE41_RS08860at 1834.169 kb on + strand, within ABIE41_RS08860at 1834.169 kb on + strand, within ABIE41_RS08860at 1834.241 kb on + strand, within ABIE41_RS08860at 1834.241 kb on + strand, within ABIE41_RS08860at 1834.241 kb on + strand, within ABIE41_RS08860at 1834.322 kb on + strandat 1834.322 kb on + strandat 1834.323 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
remove
1,831,861 + +0.5
1,831,861 + +0.1
1,832,442 + -0.4
1,832,443 - -0.5
1,832,457 + -0.1
1,832,473 + -0.8
1,832,891 + ABIE41_RS08855 0.19 +0.8
1,833,039 + ABIE41_RS08855 0.34 +0.1
1,833,039 + ABIE41_RS08855 0.34 +2.1
1,833,040 - ABIE41_RS08855 0.34 +1.8
1,833,150 + ABIE41_RS08855 0.45 +0.7
1,833,150 + ABIE41_RS08855 0.45 +0.7
1,833,150 + ABIE41_RS08855 0.45 -0.2
1,833,150 + ABIE41_RS08855 0.45 +0.2
1,833,150 + ABIE41_RS08855 0.45 -0.5
1,833,151 - ABIE41_RS08855 0.45 -1.0
1,833,151 - ABIE41_RS08855 0.45 +3.6
1,833,151 - ABIE41_RS08855 0.45 -0.2
1,833,151 - ABIE41_RS08855 0.45 +0.0
1,833,151 - ABIE41_RS08855 0.45 +0.8
1,833,151 - ABIE41_RS08855 0.45 -0.7
1,833,306 + ABIE41_RS08855 0.61 -0.1
1,833,307 - ABIE41_RS08855 0.61 -0.9
1,833,307 - ABIE41_RS08855 0.61 +0.9
1,834,004 + ABIE41_RS08860 0.29 +0.8
1,834,005 - ABIE41_RS08860 0.29 +0.0
1,834,005 - ABIE41_RS08860 0.29 -0.2
1,834,063 + ABIE41_RS08860 0.41 -0.8
1,834,064 - ABIE41_RS08860 0.41 +0.3
1,834,169 + ABIE41_RS08860 0.62 -0.7
1,834,169 + ABIE41_RS08860 0.62 +0.5
1,834,241 + ABIE41_RS08860 0.77 -1.5
1,834,241 + ABIE41_RS08860 0.77 +0.5
1,834,241 + ABIE41_RS08860 0.77 +0.6
1,834,322 + +0.5
1,834,322 + +0.3
1,834,323 - +0.3

Or see this region's nucleotide sequence