Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08845 and ABIE41_RS08850 are separated by 11 nucleotides ABIE41_RS08850 and ABIE41_RS08855 are separated by 221 nucleotides ABIE41_RS08855 and ABIE41_RS08860 are separated by 164 nucleotides ABIE41_RS08860 and ABIE41_RS08865 are separated by 2 nucleotides
ABIE41_RS08845: ABIE41_RS08845 - dihydrodipicolinate synthase family protein, at 1,830,896 to 1,831,789
_RS08845
ABIE41_RS08850: ABIE41_RS08850 - GntR family transcriptional regulator, at 1,831,801 to 1,832,478
_RS08850
ABIE41_RS08855: ABIE41_RS08855 - sialic acid TRAP transporter substrate-binding protein SiaP, at 1,832,700 to 1,833,695
_RS08855
ABIE41_RS08860: ABIE41_RS08860 - TRAP transporter small permease, at 1,833,860 to 1,834,357
_RS08860
ABIE41_RS08865: ABIE41_RS08865 - TRAP transporter large permease, at 1,834,360 to 1,835,640
_RS08865
Position (kb)
1832
1833
1834 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1831.861 kb on + strand at 1831.861 kb on + strand at 1832.442 kb on + strand at 1832.443 kb on - strand at 1832.457 kb on + strand at 1832.473 kb on + strand at 1832.891 kb on + strand, within ABIE41_RS08855 at 1833.039 kb on + strand, within ABIE41_RS08855 at 1833.039 kb on + strand, within ABIE41_RS08855 at 1833.040 kb on - strand, within ABIE41_RS08855 at 1833.150 kb on + strand, within ABIE41_RS08855 at 1833.150 kb on + strand, within ABIE41_RS08855 at 1833.150 kb on + strand, within ABIE41_RS08855 at 1833.150 kb on + strand, within ABIE41_RS08855 at 1833.150 kb on + strand, within ABIE41_RS08855 at 1833.151 kb on - strand, within ABIE41_RS08855 at 1833.151 kb on - strand, within ABIE41_RS08855 at 1833.151 kb on - strand, within ABIE41_RS08855 at 1833.151 kb on - strand, within ABIE41_RS08855 at 1833.151 kb on - strand, within ABIE41_RS08855 at 1833.151 kb on - strand, within ABIE41_RS08855 at 1833.306 kb on + strand, within ABIE41_RS08855 at 1833.307 kb on - strand, within ABIE41_RS08855 at 1833.307 kb on - strand, within ABIE41_RS08855 at 1834.004 kb on + strand, within ABIE41_RS08860 at 1834.005 kb on - strand, within ABIE41_RS08860 at 1834.005 kb on - strand, within ABIE41_RS08860 at 1834.063 kb on + strand, within ABIE41_RS08860 at 1834.064 kb on - strand, within ABIE41_RS08860 at 1834.169 kb on + strand, within ABIE41_RS08860 at 1834.169 kb on + strand, within ABIE41_RS08860 at 1834.241 kb on + strand, within ABIE41_RS08860 at 1834.241 kb on + strand, within ABIE41_RS08860 at 1834.241 kb on + strand, within ABIE41_RS08860 at 1834.322 kb on + strand at 1834.322 kb on + strand at 1834.323 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 1,831,861 + +0.5 1,831,861 + +0.1 1,832,442 + -0.4 1,832,443 - -0.5 1,832,457 + -0.1 1,832,473 + -0.8 1,832,891 + ABIE41_RS08855 0.19 +0.8 1,833,039 + ABIE41_RS08855 0.34 +0.1 1,833,039 + ABIE41_RS08855 0.34 +2.1 1,833,040 - ABIE41_RS08855 0.34 +1.8 1,833,150 + ABIE41_RS08855 0.45 +0.7 1,833,150 + ABIE41_RS08855 0.45 +0.7 1,833,150 + ABIE41_RS08855 0.45 -0.2 1,833,150 + ABIE41_RS08855 0.45 +0.2 1,833,150 + ABIE41_RS08855 0.45 -0.5 1,833,151 - ABIE41_RS08855 0.45 -1.0 1,833,151 - ABIE41_RS08855 0.45 +3.6 1,833,151 - ABIE41_RS08855 0.45 -0.2 1,833,151 - ABIE41_RS08855 0.45 +0.0 1,833,151 - ABIE41_RS08855 0.45 +0.8 1,833,151 - ABIE41_RS08855 0.45 -0.7 1,833,306 + ABIE41_RS08855 0.61 -0.1 1,833,307 - ABIE41_RS08855 0.61 -0.9 1,833,307 - ABIE41_RS08855 0.61 +0.9 1,834,004 + ABIE41_RS08860 0.29 +0.8 1,834,005 - ABIE41_RS08860 0.29 +0.0 1,834,005 - ABIE41_RS08860 0.29 -0.2 1,834,063 + ABIE41_RS08860 0.41 -0.8 1,834,064 - ABIE41_RS08860 0.41 +0.3 1,834,169 + ABIE41_RS08860 0.62 -0.7 1,834,169 + ABIE41_RS08860 0.62 +0.5 1,834,241 + ABIE41_RS08860 0.77 -1.5 1,834,241 + ABIE41_RS08860 0.77 +0.5 1,834,241 + ABIE41_RS08860 0.77 +0.6 1,834,322 + +0.5 1,834,322 + +0.3 1,834,323 - +0.3
Or see this region's nucleotide sequence