Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07275 and ABIE41_RS07280 are separated by 73 nucleotides ABIE41_RS07280 and ABIE41_RS07285 are separated by 276 nucleotides
ABIE41_RS07275: ABIE41_RS07275 - esterase-like activity of phytase family protein, at 1,500,990 to 1,501,991
_RS07275
ABIE41_RS07280: ABIE41_RS07280 - 50S ribosomal protein L28, at 1,502,065 to 1,502,352
_RS07280
ABIE41_RS07285: ABIE41_RS07285 - DUF3108 domain-containing protein, at 1,502,629 to 1,503,450
_RS07285
Position (kb) 1502
1503 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1501.381 kb on - strand, within ABIE41_RS07275 at 1501.381 kb on - strand, within ABIE41_RS07275 at 1501.383 kb on + strand, within ABIE41_RS07275 at 1501.383 kb on + strand, within ABIE41_RS07275 at 1501.384 kb on - strand, within ABIE41_RS07275 at 1501.384 kb on - strand, within ABIE41_RS07275 at 1501.384 kb on - strand, within ABIE41_RS07275 at 1501.423 kb on - strand, within ABIE41_RS07275 at 1501.423 kb on - strand, within ABIE41_RS07275 at 1501.423 kb on - strand, within ABIE41_RS07275 at 1501.941 kb on - strand at 1501.941 kb on - strand at 1501.941 kb on - strand at 1502.717 kb on + strand, within ABIE41_RS07285 at 1502.717 kb on + strand, within ABIE41_RS07285 at 1502.717 kb on + strand, within ABIE41_RS07285 at 1502.717 kb on + strand, within ABIE41_RS07285 at 1502.718 kb on - strand, within ABIE41_RS07285 at 1502.718 kb on - strand, within ABIE41_RS07285 at 1502.718 kb on - strand, within ABIE41_RS07285 at 1502.797 kb on + strand, within ABIE41_RS07285 at 1502.798 kb on - strand, within ABIE41_RS07285 at 1502.798 kb on - strand, within ABIE41_RS07285 at 1503.154 kb on + strand, within ABIE41_RS07285 at 1503.155 kb on - strand, within ABIE41_RS07285 at 1503.205 kb on + strand, within ABIE41_RS07285 at 1503.205 kb on + strand, within ABIE41_RS07285 at 1503.206 kb on - strand, within ABIE41_RS07285 at 1503.206 kb on - strand, within ABIE41_RS07285 at 1503.207 kb on + strand, within ABIE41_RS07285 at 1503.238 kb on + strand, within ABIE41_RS07285 at 1503.238 kb on + strand, within ABIE41_RS07285 at 1503.238 kb on + strand, within ABIE41_RS07285 at 1503.238 kb on + strand, within ABIE41_RS07285 at 1503.239 kb on - strand, within ABIE41_RS07285 at 1503.239 kb on - strand, within ABIE41_RS07285 at 1503.239 kb on - strand, within ABIE41_RS07285 at 1503.239 kb on - strand, within ABIE41_RS07285 at 1503.239 kb on - strand, within ABIE41_RS07285 at 1503.239 kb on - strand, within ABIE41_RS07285
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 1,501,381 - ABIE41_RS07275 0.39 -0.5 1,501,381 - ABIE41_RS07275 0.39 -0.4 1,501,383 + ABIE41_RS07275 0.39 -0.3 1,501,383 + ABIE41_RS07275 0.39 +1.0 1,501,384 - ABIE41_RS07275 0.39 -3.0 1,501,384 - ABIE41_RS07275 0.39 +0.4 1,501,384 - ABIE41_RS07275 0.39 -0.2 1,501,423 - ABIE41_RS07275 0.43 +1.1 1,501,423 - ABIE41_RS07275 0.43 -0.1 1,501,423 - ABIE41_RS07275 0.43 -0.9 1,501,941 - -0.3 1,501,941 - -0.7 1,501,941 - -0.1 1,502,717 + ABIE41_RS07285 0.11 +1.1 1,502,717 + ABIE41_RS07285 0.11 -0.2 1,502,717 + ABIE41_RS07285 0.11 -0.1 1,502,717 + ABIE41_RS07285 0.11 -1.3 1,502,718 - ABIE41_RS07285 0.11 -0.6 1,502,718 - ABIE41_RS07285 0.11 -0.5 1,502,718 - ABIE41_RS07285 0.11 +2.9 1,502,797 + ABIE41_RS07285 0.20 -0.5 1,502,798 - ABIE41_RS07285 0.21 -0.3 1,502,798 - ABIE41_RS07285 0.21 -0.7 1,503,154 + ABIE41_RS07285 0.64 -0.5 1,503,155 - ABIE41_RS07285 0.64 -0.1 1,503,205 + ABIE41_RS07285 0.70 +0.4 1,503,205 + ABIE41_RS07285 0.70 -1.6 1,503,206 - ABIE41_RS07285 0.70 -0.9 1,503,206 - ABIE41_RS07285 0.70 -0.2 1,503,207 + ABIE41_RS07285 0.70 -0.3 1,503,238 + ABIE41_RS07285 0.74 +2.9 1,503,238 + ABIE41_RS07285 0.74 -0.8 1,503,238 + ABIE41_RS07285 0.74 +0.5 1,503,238 + ABIE41_RS07285 0.74 -2.8 1,503,239 - ABIE41_RS07285 0.74 -0.4 1,503,239 - ABIE41_RS07285 0.74 -0.2 1,503,239 - ABIE41_RS07285 0.74 -0.2 1,503,239 - ABIE41_RS07285 0.74 -0.9 1,503,239 - ABIE41_RS07285 0.74 -0.7 1,503,239 - ABIE41_RS07285 0.74 -1.0
Or see this region's nucleotide sequence