Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04960 and ABIE41_RS04965 are separated by 112 nucleotides ABIE41_RS04965 and ABIE41_RS04970 are separated by 233 nucleotides ABIE41_RS04970 and ABIE41_RS04975 overlap by 4 nucleotides
ABIE41_RS04960: ABIE41_RS04960 - methyl-accepting chemotaxis protein, at 1,031,177 to 1,033,111
_RS04960
ABIE41_RS04965: ABIE41_RS04965 - aconitate hydratase AcnA, at 1,033,224 to 1,035,923
_RS04965
ABIE41_RS04970: ABIE41_RS04970 - heme ABC exporter ATP-binding protein CcmA, at 1,036,157 to 1,036,777
_RS04970
ABIE41_RS04975: ABIE41_RS04975 - heme exporter protein CcmB, at 1,036,774 to 1,037,442
_RS04975
Position (kb)
1033
1034
1035
1036 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1032.228 kb on - strand, within ABIE41_RS04960 at 1032.418 kb on + strand, within ABIE41_RS04960 at 1032.419 kb on - strand, within ABIE41_RS04960 at 1032.769 kb on + strand, within ABIE41_RS04960 at 1032.769 kb on + strand, within ABIE41_RS04960 at 1032.769 kb on + strand, within ABIE41_RS04960 at 1032.770 kb on - strand, within ABIE41_RS04960 at 1035.999 kb on - strand at 1035.999 kb on - strand at 1035.999 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.079 kb on - strand at 1036.079 kb on - strand at 1036.079 kb on - strand at 1036.079 kb on - strand at 1036.102 kb on - strand at 1036.102 kb on - strand at 1036.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 1,032,228 - ABIE41_RS04960 0.54 +1.9 1,032,418 + ABIE41_RS04960 0.64 -0.3 1,032,419 - ABIE41_RS04960 0.64 +0.2 1,032,769 + ABIE41_RS04960 0.82 -1.1 1,032,769 + ABIE41_RS04960 0.82 -0.1 1,032,769 + ABIE41_RS04960 0.82 -0.3 1,032,770 - ABIE41_RS04960 0.82 +0.8 1,035,999 - +0.3 1,035,999 - +1.3 1,035,999 - -2.1 1,036,077 - -1.2 1,036,077 - +0.4 1,036,077 - -0.1 1,036,077 - -1.4 1,036,077 - -0.9 1,036,077 - -0.1 1,036,079 - -0.1 1,036,079 - +0.3 1,036,079 - +0.2 1,036,079 - +0.6 1,036,102 - -1.4 1,036,102 - -0.1 1,036,102 - +0.2
Or see this region's nucleotide sequence