Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04965

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04960 and ABIE41_RS04965 are separated by 112 nucleotidesABIE41_RS04965 and ABIE41_RS04970 are separated by 233 nucleotidesABIE41_RS04970 and ABIE41_RS04975 overlap by 4 nucleotides ABIE41_RS04960: ABIE41_RS04960 - methyl-accepting chemotaxis protein, at 1,031,177 to 1,033,111 _RS04960 ABIE41_RS04965: ABIE41_RS04965 - aconitate hydratase AcnA, at 1,033,224 to 1,035,923 _RS04965 ABIE41_RS04970: ABIE41_RS04970 - heme ABC exporter ATP-binding protein CcmA, at 1,036,157 to 1,036,777 _RS04970 ABIE41_RS04975: ABIE41_RS04975 - heme exporter protein CcmB, at 1,036,774 to 1,037,442 _RS04975 Position (kb) 1033 1034 1035 1036Strain fitness (log2 ratio) -2 -1 0 1 2at 1032.228 kb on - strand, within ABIE41_RS04960at 1032.418 kb on + strand, within ABIE41_RS04960at 1032.419 kb on - strand, within ABIE41_RS04960at 1032.769 kb on + strand, within ABIE41_RS04960at 1032.769 kb on + strand, within ABIE41_RS04960at 1032.769 kb on + strand, within ABIE41_RS04960at 1032.770 kb on - strand, within ABIE41_RS04960at 1035.999 kb on - strandat 1035.999 kb on - strandat 1035.999 kb on - strandat 1036.077 kb on - strandat 1036.077 kb on - strandat 1036.077 kb on - strandat 1036.077 kb on - strandat 1036.077 kb on - strandat 1036.077 kb on - strandat 1036.079 kb on - strandat 1036.079 kb on - strandat 1036.079 kb on - strandat 1036.079 kb on - strandat 1036.102 kb on - strandat 1036.102 kb on - strandat 1036.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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1,032,228 - ABIE41_RS04960 0.54 +1.9
1,032,418 + ABIE41_RS04960 0.64 -0.3
1,032,419 - ABIE41_RS04960 0.64 +0.2
1,032,769 + ABIE41_RS04960 0.82 -1.1
1,032,769 + ABIE41_RS04960 0.82 -0.1
1,032,769 + ABIE41_RS04960 0.82 -0.3
1,032,770 - ABIE41_RS04960 0.82 +0.8
1,035,999 - +0.3
1,035,999 - +1.3
1,035,999 - -2.1
1,036,077 - -1.2
1,036,077 - +0.4
1,036,077 - -0.1
1,036,077 - -1.4
1,036,077 - -0.9
1,036,077 - -0.1
1,036,079 - -0.1
1,036,079 - +0.3
1,036,079 - +0.2
1,036,079 - +0.6
1,036,102 - -1.4
1,036,102 - -0.1
1,036,102 - +0.2

Or see this region's nucleotide sequence