Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04950 and ABIE41_RS04955 are separated by 183 nucleotides ABIE41_RS04955 and ABIE41_RS04960 are separated by 265 nucleotides ABIE41_RS04960 and ABIE41_RS04965 are separated by 112 nucleotides
ABIE41_RS04950: ABIE41_RS04950 - 3-hydroxyacyl-ACP dehydratase FabZ family protein, at 1,029,973 to 1,030,446
_RS04950
ABIE41_RS04955: ABIE41_RS04955 - acyl carrier protein, at 1,030,630 to 1,030,911
_RS04955
ABIE41_RS04960: ABIE41_RS04960 - methyl-accepting chemotaxis protein, at 1,031,177 to 1,033,111
_RS04960
ABIE41_RS04965: ABIE41_RS04965 - aconitate hydratase AcnA, at 1,033,224 to 1,035,923
_RS04965
Position (kb) 1031
1032
1033
1034 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1030.262 kb on + strand, within ABIE41_RS04950 at 1030.262 kb on + strand, within ABIE41_RS04950 at 1030.433 kb on + strand at 1030.691 kb on + strand, within ABIE41_RS04955 at 1030.691 kb on + strand, within ABIE41_RS04955 at 1031.017 kb on - strand at 1031.258 kb on + strand at 1031.258 kb on + strand at 1031.259 kb on - strand at 1031.259 kb on - strand at 1031.259 kb on - strand at 1031.259 kb on - strand at 1031.259 kb on - strand at 1031.369 kb on + strand at 1031.369 kb on + strand at 1031.369 kb on + strand at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.777 kb on + strand, within ABIE41_RS04960 at 1031.777 kb on + strand, within ABIE41_RS04960 at 1031.777 kb on + strand, within ABIE41_RS04960 at 1031.778 kb on - strand, within ABIE41_RS04960 at 1031.924 kb on + strand, within ABIE41_RS04960 at 1032.228 kb on - strand, within ABIE41_RS04960 at 1032.418 kb on + strand, within ABIE41_RS04960 at 1032.419 kb on - strand, within ABIE41_RS04960 at 1032.769 kb on + strand, within ABIE41_RS04960 at 1032.769 kb on + strand, within ABIE41_RS04960 at 1032.769 kb on + strand, within ABIE41_RS04960 at 1032.770 kb on - strand, within ABIE41_RS04960
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 1,030,262 + ABIE41_RS04950 0.61 -1.4 1,030,262 + ABIE41_RS04950 0.61 +0.3 1,030,433 + +0.3 1,030,691 + ABIE41_RS04955 0.22 -0.8 1,030,691 + ABIE41_RS04955 0.22 -2.4 1,031,017 - -0.3 1,031,258 + +1.4 1,031,258 + +0.4 1,031,259 - +0.1 1,031,259 - -0.5 1,031,259 - +0.1 1,031,259 - -0.0 1,031,259 - -2.0 1,031,369 + -0.1 1,031,369 + -2.2 1,031,369 + +0.3 1,031,537 + ABIE41_RS04960 0.19 -0.4 1,031,537 + ABIE41_RS04960 0.19 +0.2 1,031,537 + ABIE41_RS04960 0.19 -0.0 1,031,537 + ABIE41_RS04960 0.19 +1.3 1,031,537 + ABIE41_RS04960 0.19 -0.2 1,031,537 + ABIE41_RS04960 0.19 -0.3 1,031,537 + ABIE41_RS04960 0.19 +0.3 1,031,537 + ABIE41_RS04960 0.19 -0.8 1,031,537 + ABIE41_RS04960 0.19 -0.2 1,031,537 + ABIE41_RS04960 0.19 +0.4 1,031,538 - ABIE41_RS04960 0.19 +0.0 1,031,538 - ABIE41_RS04960 0.19 -0.5 1,031,538 - ABIE41_RS04960 0.19 +0.1 1,031,538 - ABIE41_RS04960 0.19 +0.6 1,031,538 - ABIE41_RS04960 0.19 +0.3 1,031,538 - ABIE41_RS04960 0.19 -2.0 1,031,538 - ABIE41_RS04960 0.19 +0.2 1,031,538 - ABIE41_RS04960 0.19 -1.6 1,031,777 + ABIE41_RS04960 0.31 +0.5 1,031,777 + ABIE41_RS04960 0.31 +0.1 1,031,777 + ABIE41_RS04960 0.31 +0.7 1,031,778 - ABIE41_RS04960 0.31 -0.0 1,031,924 + ABIE41_RS04960 0.39 -0.5 1,032,228 - ABIE41_RS04960 0.54 +1.9 1,032,418 + ABIE41_RS04960 0.64 -0.3 1,032,419 - ABIE41_RS04960 0.64 +0.2 1,032,769 + ABIE41_RS04960 0.82 -1.1 1,032,769 + ABIE41_RS04960 0.82 -0.1 1,032,769 + ABIE41_RS04960 0.82 -0.3 1,032,770 - ABIE41_RS04960 0.82 +0.8
Or see this region's nucleotide sequence