Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02705 and ABIE41_RS02710 overlap by 4 nucleotides ABIE41_RS02710 and ABIE41_RS02715 are separated by 236 nucleotides ABIE41_RS02715 and ABIE41_RS02720 overlap by 8 nucleotides
ABIE41_RS02705: ABIE41_RS02705 - ATP-binding protein, at 548,004 to 550,430
_RS02705
ABIE41_RS02710: ABIE41_RS02710 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 550,427 to 551,971
_RS02710
ABIE41_RS02715: ABIE41_RS02715 - nucleotidyltransferase family protein, at 552,208 to 552,927
_RS02715
ABIE41_RS02720: ABIE41_RS02720 - double-strand break repair protein AddB, at 552,920 to 556,027
_RS02720
Position (kb) 550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 550.970 kb on + strand, within ABIE41_RS02710 at 550.970 kb on + strand, within ABIE41_RS02710 at 550.970 kb on + strand, within ABIE41_RS02710 at 550.971 kb on - strand, within ABIE41_RS02710 at 550.971 kb on - strand, within ABIE41_RS02710 at 550.971 kb on - strand, within ABIE41_RS02710 at 550.971 kb on - strand, within ABIE41_RS02710 at 550.971 kb on - strand, within ABIE41_RS02710 at 551.094 kb on - strand, within ABIE41_RS02710 at 551.094 kb on - strand, within ABIE41_RS02710 at 551.094 kb on - strand, within ABIE41_RS02710 at 551.094 kb on - strand, within ABIE41_RS02710 at 551.094 kb on - strand, within ABIE41_RS02710 at 551.094 kb on - strand, within ABIE41_RS02710 at 551.186 kb on + strand, within ABIE41_RS02710 at 551.186 kb on + strand, within ABIE41_RS02710 at 551.276 kb on + strand, within ABIE41_RS02710 at 551.277 kb on - strand, within ABIE41_RS02710 at 551.372 kb on + strand, within ABIE41_RS02710 at 551.372 kb on + strand, within ABIE41_RS02710 at 551.421 kb on - strand, within ABIE41_RS02710 at 551.636 kb on + strand, within ABIE41_RS02710 at 551.772 kb on - strand, within ABIE41_RS02710 at 551.852 kb on + strand at 551.853 kb on - strand at 551.882 kb on + strand at 551.883 kb on - strand at 551.934 kb on - strand at 551.934 kb on - strand at 551.993 kb on + strand at 551.993 kb on + strand at 551.993 kb on + strand at 551.993 kb on + strand at 551.993 kb on + strand at 551.993 kb on + strand at 551.994 kb on - strand at 552.403 kb on - strand, within ABIE41_RS02715 at 552.403 kb on - strand, within ABIE41_RS02715 at 552.710 kb on - strand, within ABIE41_RS02715 at 552.751 kb on - strand, within ABIE41_RS02715 at 552.853 kb on - strand, within ABIE41_RS02715
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 550,970 + ABIE41_RS02710 0.35 -0.9 550,970 + ABIE41_RS02710 0.35 -0.9 550,970 + ABIE41_RS02710 0.35 +1.4 550,971 - ABIE41_RS02710 0.35 -1.2 550,971 - ABIE41_RS02710 0.35 -0.5 550,971 - ABIE41_RS02710 0.35 -0.1 550,971 - ABIE41_RS02710 0.35 -0.8 550,971 - ABIE41_RS02710 0.35 +0.1 551,094 - ABIE41_RS02710 0.43 +0.1 551,094 - ABIE41_RS02710 0.43 +0.1 551,094 - ABIE41_RS02710 0.43 -1.4 551,094 - ABIE41_RS02710 0.43 +1.9 551,094 - ABIE41_RS02710 0.43 -0.2 551,094 - ABIE41_RS02710 0.43 +1.9 551,186 + ABIE41_RS02710 0.49 -2.5 551,186 + ABIE41_RS02710 0.49 -2.1 551,276 + ABIE41_RS02710 0.55 -0.5 551,277 - ABIE41_RS02710 0.55 +0.1 551,372 + ABIE41_RS02710 0.61 -0.3 551,372 + ABIE41_RS02710 0.61 -0.0 551,421 - ABIE41_RS02710 0.64 +0.3 551,636 + ABIE41_RS02710 0.78 -2.5 551,772 - ABIE41_RS02710 0.87 -0.9 551,852 + +2.9 551,853 - -0.6 551,882 + -1.0 551,883 - -0.8 551,934 - -0.9 551,934 - -3.3 551,993 + +0.5 551,993 + -1.0 551,993 + +0.3 551,993 + +0.9 551,993 + -1.5 551,993 + -0.0 551,994 - -1.1 552,403 - ABIE41_RS02715 0.27 -1.1 552,403 - ABIE41_RS02715 0.27 +0.3 552,710 - ABIE41_RS02715 0.70 +0.6 552,751 - ABIE41_RS02715 0.75 -0.2 552,853 - ABIE41_RS02715 0.90 -2.1
Or see this region's nucleotide sequence