Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02290 and ABIE41_RS02295 are separated by 91 nucleotides ABIE41_RS02295 and ABIE41_RS02300 are separated by 437 nucleotides
ABIE41_RS02290: ABIE41_RS02290 - ABC transporter permease, at 457,051 to 458,007
_RS02290
ABIE41_RS02295: ABIE41_RS02295 - ABC transporter substrate-binding protein, at 458,099 to 459,661
_RS02295
ABIE41_RS02300: ABIE41_RS02300 - isochorismatase family cysteine hydrolase, at 460,099 to 460,806
_RS02300
Position (kb) 458
459
460 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 457.574 kb on + strand, within ABIE41_RS02290 at 457.575 kb on - strand, within ABIE41_RS02290 at 457.640 kb on + strand, within ABIE41_RS02290 at 457.643 kb on + strand, within ABIE41_RS02290 at 457.643 kb on + strand, within ABIE41_RS02290 at 457.644 kb on - strand, within ABIE41_RS02290 at 457.644 kb on - strand, within ABIE41_RS02290 at 457.644 kb on - strand, within ABIE41_RS02290 at 457.844 kb on + strand, within ABIE41_RS02290 at 457.844 kb on + strand, within ABIE41_RS02290 at 457.844 kb on + strand, within ABIE41_RS02290 at 457.845 kb on - strand, within ABIE41_RS02290 at 457.845 kb on - strand, within ABIE41_RS02290 at 457.845 kb on - strand, within ABIE41_RS02290 at 457.997 kb on + strand at 457.997 kb on + strand at 457.997 kb on + strand at 457.997 kb on + strand at 457.997 kb on + strand at 457.998 kb on - strand at 458.292 kb on + strand, within ABIE41_RS02295 at 458.293 kb on - strand, within ABIE41_RS02295 at 458.293 kb on - strand, within ABIE41_RS02295 at 458.293 kb on - strand, within ABIE41_RS02295 at 458.332 kb on - strand, within ABIE41_RS02295 at 458.332 kb on - strand, within ABIE41_RS02295 at 458.437 kb on - strand, within ABIE41_RS02295 at 458.437 kb on - strand, within ABIE41_RS02295 at 458.667 kb on + strand, within ABIE41_RS02295 at 458.667 kb on + strand, within ABIE41_RS02295 at 458.667 kb on + strand, within ABIE41_RS02295 at 458.668 kb on - strand, within ABIE41_RS02295 at 458.668 kb on - strand, within ABIE41_RS02295 at 458.668 kb on - strand, within ABIE41_RS02295 at 458.688 kb on + strand, within ABIE41_RS02295 at 458.716 kb on - strand, within ABIE41_RS02295 at 458.772 kb on + strand, within ABIE41_RS02295 at 458.772 kb on + strand, within ABIE41_RS02295 at 458.772 kb on + strand, within ABIE41_RS02295 at 458.773 kb on - strand, within ABIE41_RS02295 at 458.773 kb on - strand, within ABIE41_RS02295 at 458.832 kb on + strand, within ABIE41_RS02295 at 458.833 kb on - strand, within ABIE41_RS02295 at 458.833 kb on - strand, within ABIE41_RS02295 at 458.833 kb on - strand, within ABIE41_RS02295 at 458.851 kb on - strand, within ABIE41_RS02295 at 459.024 kb on + strand, within ABIE41_RS02295 at 459.024 kb on + strand, within ABIE41_RS02295 at 459.025 kb on - strand, within ABIE41_RS02295 at 459.025 kb on - strand, within ABIE41_RS02295 at 459.082 kb on - strand, within ABIE41_RS02295 at 459.111 kb on + strand, within ABIE41_RS02295 at 459.112 kb on - strand, within ABIE41_RS02295 at 459.112 kb on - strand, within ABIE41_RS02295 at 459.112 kb on - strand, within ABIE41_RS02295 at 459.121 kb on - strand, within ABIE41_RS02295 at 459.121 kb on - strand, within ABIE41_RS02295 at 459.180 kb on + strand, within ABIE41_RS02295 at 459.180 kb on + strand, within ABIE41_RS02295 at 459.181 kb on - strand, within ABIE41_RS02295 at 459.181 kb on - strand, within ABIE41_RS02295 at 459.181 kb on - strand, within ABIE41_RS02295 at 459.507 kb on + strand at 459.717 kb on + strand at 459.768 kb on + strand at 460.259 kb on + strand, within ABIE41_RS02300 at 460.259 kb on + strand, within ABIE41_RS02300 at 460.259 kb on + strand, within ABIE41_RS02300 at 460.259 kb on + strand, within ABIE41_RS02300 at 460.259 kb on + strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.445 kb on + strand, within ABIE41_RS02300 at 460.445 kb on + strand, within ABIE41_RS02300 at 460.446 kb on - strand, within ABIE41_RS02300 at 460.574 kb on + strand, within ABIE41_RS02300 at 460.575 kb on - strand, within ABIE41_RS02300 at 460.575 kb on - strand, within ABIE41_RS02300 at 460.575 kb on - strand, within ABIE41_RS02300 at 460.575 kb on - strand, within ABIE41_RS02300 at 460.646 kb on + strand, within ABIE41_RS02300 at 460.647 kb on - strand, within ABIE41_RS02300
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 457,574 + ABIE41_RS02290 0.55 -0.0 457,575 - ABIE41_RS02290 0.55 +0.2 457,640 + ABIE41_RS02290 0.62 +0.2 457,643 + ABIE41_RS02290 0.62 +0.2 457,643 + ABIE41_RS02290 0.62 -3.0 457,644 - ABIE41_RS02290 0.62 +0.1 457,644 - ABIE41_RS02290 0.62 +0.3 457,644 - ABIE41_RS02290 0.62 -0.8 457,844 + ABIE41_RS02290 0.83 +0.1 457,844 + ABIE41_RS02290 0.83 -0.0 457,844 + ABIE41_RS02290 0.83 -0.3 457,845 - ABIE41_RS02290 0.83 -0.5 457,845 - ABIE41_RS02290 0.83 +0.5 457,845 - ABIE41_RS02290 0.83 +0.6 457,997 + +0.9 457,997 + +1.2 457,997 + +0.6 457,997 + +0.1 457,997 + -0.4 457,998 - +0.4 458,292 + ABIE41_RS02295 0.12 -0.9 458,293 - ABIE41_RS02295 0.12 -1.0 458,293 - ABIE41_RS02295 0.12 -3.0 458,293 - ABIE41_RS02295 0.12 -0.0 458,332 - ABIE41_RS02295 0.15 -0.4 458,332 - ABIE41_RS02295 0.15 +0.4 458,437 - ABIE41_RS02295 0.22 -0.7 458,437 - ABIE41_RS02295 0.22 -0.3 458,667 + ABIE41_RS02295 0.36 -1.8 458,667 + ABIE41_RS02295 0.36 +0.2 458,667 + ABIE41_RS02295 0.36 -1.2 458,668 - ABIE41_RS02295 0.36 -0.3 458,668 - ABIE41_RS02295 0.36 +1.9 458,668 - ABIE41_RS02295 0.36 -0.0 458,688 + ABIE41_RS02295 0.38 +0.3 458,716 - ABIE41_RS02295 0.39 +0.1 458,772 + ABIE41_RS02295 0.43 -1.9 458,772 + ABIE41_RS02295 0.43 +1.6 458,772 + ABIE41_RS02295 0.43 +0.1 458,773 - ABIE41_RS02295 0.43 +3.3 458,773 - ABIE41_RS02295 0.43 -1.2 458,832 + ABIE41_RS02295 0.47 +0.6 458,833 - ABIE41_RS02295 0.47 -0.2 458,833 - ABIE41_RS02295 0.47 -0.2 458,833 - ABIE41_RS02295 0.47 -2.2 458,851 - ABIE41_RS02295 0.48 -0.5 459,024 + ABIE41_RS02295 0.59 -0.1 459,024 + ABIE41_RS02295 0.59 +4.2 459,025 - ABIE41_RS02295 0.59 -0.2 459,025 - ABIE41_RS02295 0.59 +0.1 459,082 - ABIE41_RS02295 0.63 +0.1 459,111 + ABIE41_RS02295 0.65 -0.6 459,112 - ABIE41_RS02295 0.65 -1.8 459,112 - ABIE41_RS02295 0.65 -0.9 459,112 - ABIE41_RS02295 0.65 -0.7 459,121 - ABIE41_RS02295 0.65 +0.3 459,121 - ABIE41_RS02295 0.65 -0.2 459,180 + ABIE41_RS02295 0.69 -0.5 459,180 + ABIE41_RS02295 0.69 -1.4 459,181 - ABIE41_RS02295 0.69 +1.2 459,181 - ABIE41_RS02295 0.69 +0.4 459,181 - ABIE41_RS02295 0.69 -0.1 459,507 + -0.7 459,717 + +0.7 459,768 + +0.9 460,259 + ABIE41_RS02300 0.23 -0.2 460,259 + ABIE41_RS02300 0.23 -2.4 460,259 + ABIE41_RS02300 0.23 -0.1 460,259 + ABIE41_RS02300 0.23 +0.1 460,259 + ABIE41_RS02300 0.23 -0.0 460,260 - ABIE41_RS02300 0.23 +1.1 460,260 - ABIE41_RS02300 0.23 +0.0 460,260 - ABIE41_RS02300 0.23 -2.4 460,260 - ABIE41_RS02300 0.23 +1.5 460,260 - ABIE41_RS02300 0.23 +0.3 460,260 - ABIE41_RS02300 0.23 -0.0 460,260 - ABIE41_RS02300 0.23 -0.1 460,260 - ABIE41_RS02300 0.23 -0.3 460,445 + ABIE41_RS02300 0.49 -0.2 460,445 + ABIE41_RS02300 0.49 +0.2 460,446 - ABIE41_RS02300 0.49 -0.2 460,574 + ABIE41_RS02300 0.67 -0.3 460,575 - ABIE41_RS02300 0.67 +0.9 460,575 - ABIE41_RS02300 0.67 +2.0 460,575 - ABIE41_RS02300 0.67 -0.4 460,575 - ABIE41_RS02300 0.67 -0.2 460,646 + ABIE41_RS02300 0.77 +0.1 460,647 - ABIE41_RS02300 0.77 +1.7
Or see this region's nucleotide sequence