Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01715

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01700 and ABIE41_RS01705 overlap by 4 nucleotidesABIE41_RS01705 and ABIE41_RS01710 are separated by 2 nucleotidesABIE41_RS01710 and ABIE41_RS01715 are separated by 287 nucleotidesABIE41_RS01715 and ABIE41_RS01720 are separated by 113 nucleotidesABIE41_RS01720 and ABIE41_RS01725 are separated by 0 nucleotides ABIE41_RS01700: ABIE41_RS01700 - chemotaxis protein CheA, at 344,680 to 346,764 _RS01700 ABIE41_RS01705: ABIE41_RS01705 - response regulator, at 346,761 to 347,126 _RS01705 ABIE41_RS01710: ABIE41_RS01710 - STAS domain-containing protein, at 347,129 to 347,440 _RS01710 ABIE41_RS01715: ABIE41_RS01715 - AraC family transcriptional regulator, at 347,728 to 348,744 _RS01715 ABIE41_RS01720: ABIE41_RS01720 - DUF924 family protein, at 348,858 to 349,433 _RS01720 ABIE41_RS01725: ABIE41_RS01725 - ethanolamine ammonia-lyase subunit EutC, at 349,434 to 350,225 _RS01725 Position (kb) 347 348 349Strain fitness (log2 ratio) -2 -1 0 1 2 3at 347.386 kb on + strand, within ABIE41_RS01710at 347.386 kb on + strand, within ABIE41_RS01710at 347.386 kb on + strand, within ABIE41_RS01710at 347.386 kb on + strand, within ABIE41_RS01710at 347.387 kb on - strand, within ABIE41_RS01710at 347.387 kb on - strand, within ABIE41_RS01710at 347.387 kb on - strand, within ABIE41_RS01710at 347.778 kb on - strandat 347.900 kb on + strand, within ABIE41_RS01715at 347.900 kb on + strand, within ABIE41_RS01715at 347.900 kb on + strand, within ABIE41_RS01715at 347.900 kb on + strand, within ABIE41_RS01715at 347.900 kb on + strand, within ABIE41_RS01715at 347.900 kb on + strand, within ABIE41_RS01715at 347.900 kb on + strand, within ABIE41_RS01715at 347.901 kb on - strand, within ABIE41_RS01715at 347.901 kb on - strand, within ABIE41_RS01715at 347.901 kb on - strand, within ABIE41_RS01715at 347.901 kb on - strand, within ABIE41_RS01715at 347.901 kb on - strand, within ABIE41_RS01715at 347.901 kb on - strand, within ABIE41_RS01715at 347.901 kb on - strand, within ABIE41_RS01715at 347.901 kb on - strand, within ABIE41_RS01715at 347.901 kb on - strand, within ABIE41_RS01715at 347.901 kb on - strand, within ABIE41_RS01715at 347.901 kb on - strand, within ABIE41_RS01715at 347.901 kb on - strand, within ABIE41_RS01715at 347.901 kb on - strand, within ABIE41_RS01715at 348.087 kb on - strand, within ABIE41_RS01715at 348.359 kb on + strand, within ABIE41_RS01715at 348.440 kb on + strand, within ABIE41_RS01715at 348.440 kb on + strand, within ABIE41_RS01715at 348.440 kb on + strand, within ABIE41_RS01715at 348.441 kb on - strand, within ABIE41_RS01715at 348.441 kb on - strand, within ABIE41_RS01715at 348.441 kb on - strand, within ABIE41_RS01715at 348.521 kb on + strand, within ABIE41_RS01715at 348.521 kb on + strand, within ABIE41_RS01715at 348.521 kb on + strand, within ABIE41_RS01715at 348.522 kb on - strand, within ABIE41_RS01715at 348.750 kb on + strandat 348.750 kb on + strandat 348.751 kb on - strandat 348.751 kb on - strandat 348.775 kb on - strandat 348.775 kb on - strandat 349.011 kb on + strand, within ABIE41_RS01720at 349.012 kb on - strand, within ABIE41_RS01720at 349.012 kb on - strand, within ABIE41_RS01720at 349.012 kb on - strand, within ABIE41_RS01720at 349.124 kb on + strand, within ABIE41_RS01720at 349.124 kb on + strand, within ABIE41_RS01720at 349.124 kb on + strand, within ABIE41_RS01720at 349.124 kb on + strand, within ABIE41_RS01720at 349.124 kb on + strand, within ABIE41_RS01720at 349.125 kb on - strand, within ABIE41_RS01720at 349.125 kb on - strand, within ABIE41_RS01720at 349.125 kb on - strand, within ABIE41_RS01720at 349.125 kb on - strand, within ABIE41_RS01720at 349.125 kb on - strand, within ABIE41_RS01720at 349.125 kb on - strand, within ABIE41_RS01720at 349.125 kb on - strand, within ABIE41_RS01720at 349.128 kb on + strand, within ABIE41_RS01720at 349.128 kb on + strand, within ABIE41_RS01720at 349.128 kb on + strand, within ABIE41_RS01720at 349.128 kb on + strand, within ABIE41_RS01720at 349.128 kb on + strand, within ABIE41_RS01720at 349.128 kb on + strand, within ABIE41_RS01720at 349.128 kb on + strand, within ABIE41_RS01720at 349.128 kb on + strand, within ABIE41_RS01720at 349.128 kb on + strand, within ABIE41_RS01720at 349.128 kb on + strand, within ABIE41_RS01720at 349.129 kb on - strand, within ABIE41_RS01720at 349.129 kb on - strand, within ABIE41_RS01720at 349.129 kb on - strand, within ABIE41_RS01720at 349.129 kb on - strand, within ABIE41_RS01720at 349.129 kb on - strand, within ABIE41_RS01720at 349.129 kb on - strand, within ABIE41_RS01720at 349.129 kb on - strand, within ABIE41_RS01720at 349.129 kb on - strand, within ABIE41_RS01720at 349.129 kb on - strand, within ABIE41_RS01720at 349.129 kb on - strand, within ABIE41_RS01720at 349.592 kb on + strand, within ABIE41_RS01725at 349.652 kb on - strand, within ABIE41_RS01725

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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347,386 + ABIE41_RS01710 0.82 -0.2
347,386 + ABIE41_RS01710 0.82 +0.1
347,386 + ABIE41_RS01710 0.82 -1.1
347,386 + ABIE41_RS01710 0.82 -0.7
347,387 - ABIE41_RS01710 0.83 +0.1
347,387 - ABIE41_RS01710 0.83 +0.1
347,387 - ABIE41_RS01710 0.83 +0.3
347,778 - -0.1
347,900 + ABIE41_RS01715 0.17 -0.4
347,900 + ABIE41_RS01715 0.17 -1.6
347,900 + ABIE41_RS01715 0.17 -0.5
347,900 + ABIE41_RS01715 0.17 +2.1
347,900 + ABIE41_RS01715 0.17 +1.1
347,900 + ABIE41_RS01715 0.17 +0.0
347,900 + ABIE41_RS01715 0.17 +1.1
347,901 - ABIE41_RS01715 0.17 +0.6
347,901 - ABIE41_RS01715 0.17 -0.8
347,901 - ABIE41_RS01715 0.17 +0.5
347,901 - ABIE41_RS01715 0.17 +0.1
347,901 - ABIE41_RS01715 0.17 +0.9
347,901 - ABIE41_RS01715 0.17 -0.1
347,901 - ABIE41_RS01715 0.17 -0.7
347,901 - ABIE41_RS01715 0.17 +0.5
347,901 - ABIE41_RS01715 0.17 -0.1
347,901 - ABIE41_RS01715 0.17 +0.1
347,901 - ABIE41_RS01715 0.17 -1.5
347,901 - ABIE41_RS01715 0.17 +0.2
347,901 - ABIE41_RS01715 0.17 -0.3
348,087 - ABIE41_RS01715 0.35 +3.1
348,359 + ABIE41_RS01715 0.62 -2.5
348,440 + ABIE41_RS01715 0.70 -0.8
348,440 + ABIE41_RS01715 0.70 -1.1
348,440 + ABIE41_RS01715 0.70 +0.1
348,441 - ABIE41_RS01715 0.70 -0.7
348,441 - ABIE41_RS01715 0.70 +1.4
348,441 - ABIE41_RS01715 0.70 -0.5
348,521 + ABIE41_RS01715 0.78 -1.1
348,521 + ABIE41_RS01715 0.78 -0.5
348,521 + ABIE41_RS01715 0.78 +0.3
348,522 - ABIE41_RS01715 0.78 +1.7
348,750 + -0.5
348,750 + -0.5
348,751 - -0.1
348,751 - -0.2
348,775 - -0.1
348,775 - -0.8
349,011 + ABIE41_RS01720 0.27 +0.1
349,012 - ABIE41_RS01720 0.27 +0.6
349,012 - ABIE41_RS01720 0.27 -1.6
349,012 - ABIE41_RS01720 0.27 -0.6
349,124 + ABIE41_RS01720 0.46 +0.2
349,124 + ABIE41_RS01720 0.46 -0.6
349,124 + ABIE41_RS01720 0.46 +0.1
349,124 + ABIE41_RS01720 0.46 -1.3
349,124 + ABIE41_RS01720 0.46 -0.1
349,125 - ABIE41_RS01720 0.46 +0.3
349,125 - ABIE41_RS01720 0.46 +0.8
349,125 - ABIE41_RS01720 0.46 -0.5
349,125 - ABIE41_RS01720 0.46 -0.3
349,125 - ABIE41_RS01720 0.46 -0.3
349,125 - ABIE41_RS01720 0.46 -0.6
349,125 - ABIE41_RS01720 0.46 +1.2
349,128 + ABIE41_RS01720 0.47 +0.1
349,128 + ABIE41_RS01720 0.47 -0.4
349,128 + ABIE41_RS01720 0.47 -0.3
349,128 + ABIE41_RS01720 0.47 +1.1
349,128 + ABIE41_RS01720 0.47 -1.2
349,128 + ABIE41_RS01720 0.47 +0.7
349,128 + ABIE41_RS01720 0.47 +0.4
349,128 + ABIE41_RS01720 0.47 -0.3
349,128 + ABIE41_RS01720 0.47 +0.6
349,128 + ABIE41_RS01720 0.47 +0.5
349,129 - ABIE41_RS01720 0.47 +0.7
349,129 - ABIE41_RS01720 0.47 +0.0
349,129 - ABIE41_RS01720 0.47 -0.4
349,129 - ABIE41_RS01720 0.47 +0.7
349,129 - ABIE41_RS01720 0.47 +0.7
349,129 - ABIE41_RS01720 0.47 +0.9
349,129 - ABIE41_RS01720 0.47 -0.5
349,129 - ABIE41_RS01720 0.47 -0.7
349,129 - ABIE41_RS01720 0.47 -0.4
349,129 - ABIE41_RS01720 0.47 -0.0
349,592 + ABIE41_RS01725 0.20 +0.3
349,652 - ABIE41_RS01725 0.28 +0.5

Or see this region's nucleotide sequence