Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01700 and ABIE41_RS01705 overlap by 4 nucleotides ABIE41_RS01705 and ABIE41_RS01710 are separated by 2 nucleotides ABIE41_RS01710 and ABIE41_RS01715 are separated by 287 nucleotides
ABIE41_RS01700: ABIE41_RS01700 - chemotaxis protein CheA, at 344,680 to 346,764
_RS01700
ABIE41_RS01705: ABIE41_RS01705 - response regulator, at 346,761 to 347,126
_RS01705
ABIE41_RS01710: ABIE41_RS01710 - STAS domain-containing protein, at 347,129 to 347,440
_RS01710
ABIE41_RS01715: ABIE41_RS01715 - AraC family transcriptional regulator, at 347,728 to 348,744
_RS01715
Position (kb) 347
348 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 346.275 kb on + strand, within ABIE41_RS01700 at 346.481 kb on + strand, within ABIE41_RS01700 at 346.481 kb on + strand, within ABIE41_RS01700 at 346.481 kb on + strand, within ABIE41_RS01700 at 346.481 kb on + strand, within ABIE41_RS01700 at 346.482 kb on - strand, within ABIE41_RS01700 at 346.482 kb on - strand, within ABIE41_RS01700 at 347.386 kb on + strand, within ABIE41_RS01710 at 347.386 kb on + strand, within ABIE41_RS01710 at 347.386 kb on + strand, within ABIE41_RS01710 at 347.386 kb on + strand, within ABIE41_RS01710 at 347.387 kb on - strand, within ABIE41_RS01710 at 347.387 kb on - strand, within ABIE41_RS01710 at 347.387 kb on - strand, within ABIE41_RS01710 at 347.778 kb on - strand at 347.900 kb on + strand, within ABIE41_RS01715 at 347.900 kb on + strand, within ABIE41_RS01715 at 347.900 kb on + strand, within ABIE41_RS01715 at 347.900 kb on + strand, within ABIE41_RS01715 at 347.900 kb on + strand, within ABIE41_RS01715 at 347.900 kb on + strand, within ABIE41_RS01715 at 347.900 kb on + strand, within ABIE41_RS01715 at 347.901 kb on - strand, within ABIE41_RS01715 at 347.901 kb on - strand, within ABIE41_RS01715 at 347.901 kb on - strand, within ABIE41_RS01715 at 347.901 kb on - strand, within ABIE41_RS01715 at 347.901 kb on - strand, within ABIE41_RS01715 at 347.901 kb on - strand, within ABIE41_RS01715 at 347.901 kb on - strand, within ABIE41_RS01715 at 347.901 kb on - strand, within ABIE41_RS01715 at 347.901 kb on - strand, within ABIE41_RS01715 at 347.901 kb on - strand, within ABIE41_RS01715 at 347.901 kb on - strand, within ABIE41_RS01715 at 347.901 kb on - strand, within ABIE41_RS01715 at 347.901 kb on - strand, within ABIE41_RS01715 at 348.087 kb on - strand, within ABIE41_RS01715 at 348.359 kb on + strand, within ABIE41_RS01715 at 348.440 kb on + strand, within ABIE41_RS01715 at 348.440 kb on + strand, within ABIE41_RS01715 at 348.440 kb on + strand, within ABIE41_RS01715
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 346,275 + ABIE41_RS01700 0.76 +0.3 346,481 + ABIE41_RS01700 0.86 +0.7 346,481 + ABIE41_RS01700 0.86 +0.0 346,481 + ABIE41_RS01700 0.86 +0.1 346,481 + ABIE41_RS01700 0.86 -0.0 346,482 - ABIE41_RS01700 0.86 +1.4 346,482 - ABIE41_RS01700 0.86 -0.4 347,386 + ABIE41_RS01710 0.82 -0.2 347,386 + ABIE41_RS01710 0.82 +0.1 347,386 + ABIE41_RS01710 0.82 -1.1 347,386 + ABIE41_RS01710 0.82 -0.7 347,387 - ABIE41_RS01710 0.83 +0.1 347,387 - ABIE41_RS01710 0.83 +0.1 347,387 - ABIE41_RS01710 0.83 +0.3 347,778 - -0.1 347,900 + ABIE41_RS01715 0.17 -0.4 347,900 + ABIE41_RS01715 0.17 -1.6 347,900 + ABIE41_RS01715 0.17 -0.5 347,900 + ABIE41_RS01715 0.17 +2.1 347,900 + ABIE41_RS01715 0.17 +1.1 347,900 + ABIE41_RS01715 0.17 +0.0 347,900 + ABIE41_RS01715 0.17 +1.1 347,901 - ABIE41_RS01715 0.17 +0.6 347,901 - ABIE41_RS01715 0.17 -0.8 347,901 - ABIE41_RS01715 0.17 +0.5 347,901 - ABIE41_RS01715 0.17 +0.1 347,901 - ABIE41_RS01715 0.17 +0.9 347,901 - ABIE41_RS01715 0.17 -0.1 347,901 - ABIE41_RS01715 0.17 -0.7 347,901 - ABIE41_RS01715 0.17 +0.5 347,901 - ABIE41_RS01715 0.17 -0.1 347,901 - ABIE41_RS01715 0.17 +0.1 347,901 - ABIE41_RS01715 0.17 -1.5 347,901 - ABIE41_RS01715 0.17 +0.2 347,901 - ABIE41_RS01715 0.17 -0.3 348,087 - ABIE41_RS01715 0.35 +3.1 348,359 + ABIE41_RS01715 0.62 -2.5 348,440 + ABIE41_RS01715 0.70 -0.8 348,440 + ABIE41_RS01715 0.70 -1.1 348,440 + ABIE41_RS01715 0.70 +0.1
Or see this region's nucleotide sequence