Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01695

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01690 and ABIE41_RS01695 are separated by 30 nucleotidesABIE41_RS01695 and ABIE41_RS01700 overlap by 1 nucleotides ABIE41_RS01690: ABIE41_RS01690 - methyl-accepting chemotaxis protein, at 342,113 to 344,167 _RS01690 ABIE41_RS01695: ABIE41_RS01695 - chemotaxis protein CheW, at 344,198 to 344,680 _RS01695 ABIE41_RS01700: ABIE41_RS01700 - chemotaxis protein CheA, at 344,680 to 346,764 _RS01700 Position (kb) 344 345Strain fitness (log2 ratio) -1 0 1at 343.253 kb on - strand, within ABIE41_RS01690at 343.253 kb on - strand, within ABIE41_RS01690at 343.253 kb on - strand, within ABIE41_RS01690at 343.299 kb on + strand, within ABIE41_RS01690at 343.300 kb on - strand, within ABIE41_RS01690at 343.300 kb on - strand, within ABIE41_RS01690at 343.308 kb on + strand, within ABIE41_RS01690at 343.596 kb on + strand, within ABIE41_RS01690at 343.596 kb on + strand, within ABIE41_RS01690at 343.597 kb on - strand, within ABIE41_RS01690at 343.611 kb on + strand, within ABIE41_RS01690at 343.695 kb on + strand, within ABIE41_RS01690at 343.695 kb on + strand, within ABIE41_RS01690at 343.695 kb on + strand, within ABIE41_RS01690at 343.695 kb on + strand, within ABIE41_RS01690at 343.695 kb on + strand, within ABIE41_RS01690at 343.696 kb on - strand, within ABIE41_RS01690at 343.696 kb on - strand, within ABIE41_RS01690at 343.749 kb on + strand, within ABIE41_RS01690at 343.750 kb on - strand, within ABIE41_RS01690at 343.750 kb on - strand, within ABIE41_RS01690at 343.750 kb on - strand, within ABIE41_RS01690at 343.750 kb on - strand, within ABIE41_RS01690at 343.750 kb on - strand, within ABIE41_RS01690at 343.750 kb on - strand, within ABIE41_RS01690at 343.872 kb on + strand, within ABIE41_RS01690at 343.872 kb on + strand, within ABIE41_RS01690at 343.873 kb on - strand, within ABIE41_RS01690at 343.873 kb on - strand, within ABIE41_RS01690at 343.873 kb on - strand, within ABIE41_RS01690at 344.341 kb on - strand, within ABIE41_RS01695at 344.962 kb on + strand, within ABIE41_RS01700at 344.962 kb on + strand, within ABIE41_RS01700at 344.962 kb on + strand, within ABIE41_RS01700at 344.963 kb on - strand, within ABIE41_RS01700at 344.963 kb on - strand, within ABIE41_RS01700at 345.074 kb on + strand, within ABIE41_RS01700at 345.075 kb on - strand, within ABIE41_RS01700at 345.075 kb on - strand, within ABIE41_RS01700at 345.075 kb on - strand, within ABIE41_RS01700at 345.075 kb on - strand, within ABIE41_RS01700at 345.422 kb on + strand, within ABIE41_RS01700at 345.422 kb on + strand, within ABIE41_RS01700at 345.422 kb on + strand, within ABIE41_RS01700at 345.422 kb on + strand, within ABIE41_RS01700at 345.422 kb on + strand, within ABIE41_RS01700at 345.422 kb on + strand, within ABIE41_RS01700at 345.423 kb on - strand, within ABIE41_RS01700at 345.423 kb on - strand, within ABIE41_RS01700at 345.423 kb on - strand, within ABIE41_RS01700at 345.423 kb on - strand, within ABIE41_RS01700at 345.423 kb on - strand, within ABIE41_RS01700at 345.423 kb on - strand, within ABIE41_RS01700

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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343,253 - ABIE41_RS01690 0.55 -0.5
343,253 - ABIE41_RS01690 0.55 -0.0
343,253 - ABIE41_RS01690 0.55 +1.1
343,299 + ABIE41_RS01690 0.58 -0.3
343,300 - ABIE41_RS01690 0.58 +1.6
343,300 - ABIE41_RS01690 0.58 +0.2
343,308 + ABIE41_RS01690 0.58 -0.5
343,596 + ABIE41_RS01690 0.72 +0.7
343,596 + ABIE41_RS01690 0.72 +0.6
343,597 - ABIE41_RS01690 0.72 +0.1
343,611 + ABIE41_RS01690 0.73 -1.2
343,695 + ABIE41_RS01690 0.77 -0.7
343,695 + ABIE41_RS01690 0.77 +0.5
343,695 + ABIE41_RS01690 0.77 -0.3
343,695 + ABIE41_RS01690 0.77 -0.5
343,695 + ABIE41_RS01690 0.77 +0.2
343,696 - ABIE41_RS01690 0.77 +0.3
343,696 - ABIE41_RS01690 0.77 +1.2
343,749 + ABIE41_RS01690 0.80 -0.3
343,750 - ABIE41_RS01690 0.80 -0.2
343,750 - ABIE41_RS01690 0.80 -1.3
343,750 - ABIE41_RS01690 0.80 -1.4
343,750 - ABIE41_RS01690 0.80 -0.9
343,750 - ABIE41_RS01690 0.80 -0.3
343,750 - ABIE41_RS01690 0.80 +0.0
343,872 + ABIE41_RS01690 0.86 +1.5
343,872 + ABIE41_RS01690 0.86 -0.5
343,873 - ABIE41_RS01690 0.86 -0.3
343,873 - ABIE41_RS01690 0.86 -0.3
343,873 - ABIE41_RS01690 0.86 -0.7
344,341 - ABIE41_RS01695 0.30 -0.7
344,962 + ABIE41_RS01700 0.14 -1.3
344,962 + ABIE41_RS01700 0.14 -0.4
344,962 + ABIE41_RS01700 0.14 -0.3
344,963 - ABIE41_RS01700 0.14 -0.3
344,963 - ABIE41_RS01700 0.14 +0.1
345,074 + ABIE41_RS01700 0.19 -0.4
345,075 - ABIE41_RS01700 0.19 -0.3
345,075 - ABIE41_RS01700 0.19 -0.8
345,075 - ABIE41_RS01700 0.19 +0.2
345,075 - ABIE41_RS01700 0.19 +0.1
345,422 + ABIE41_RS01700 0.36 -0.4
345,422 + ABIE41_RS01700 0.36 -0.8
345,422 + ABIE41_RS01700 0.36 -0.1
345,422 + ABIE41_RS01700 0.36 -1.1
345,422 + ABIE41_RS01700 0.36 +0.1
345,422 + ABIE41_RS01700 0.36 +0.2
345,423 - ABIE41_RS01700 0.36 +0.6
345,423 - ABIE41_RS01700 0.36 -0.2
345,423 - ABIE41_RS01700 0.36 -0.2
345,423 - ABIE41_RS01700 0.36 -0.1
345,423 - ABIE41_RS01700 0.36 +0.4
345,423 - ABIE41_RS01700 0.36 -0.3

Or see this region's nucleotide sequence